Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019706 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 2.1e-82 308.9 147 100.0
Lalb_Chr02g0143291 Lupinus albus HOM05D006866 ORTHO05D008689 1.2e-45 186.8 131 64.9
Aa31LG9G16090 Aethionema arabicum HOM05D006866 ORTHO05D008689 3.6e-42 175.3 127 62.2
Carub.0004s1681 Capsella rubella HOM05D006866 ORTHO05D008689 1.4e-41 173.3 127 60.6
Thhalv10017758m.g Eutrema salsugineum HOM05D006866 ORTHO05D008689 1.8e-41 172.9 127 61.4
CARHR129270 Cardamine hirsuta HOM05D006866 ORTHO05D008689 5.2e-41 171.4 127 61.4
AL4G31140 Arabidopsis lyrata HOM05D006866 ORTHO05D008689 6.7e-41 171.0 127 59.8
C04p13710 Brassica napus HOM05D006866 ORTHO05D008689 1.1e-40 170.2 127 60.6
BcaB02g09476 Brassica carinata HOM05D006866 ORTHO05D008689 1.5e-40 169.9 127 60.6
A05p10610 Brassica napus HOM05D006866 ORTHO05D008689 1.7e-39 166.4 127 59.8
BolC4t22960H Brassica oleracea HOM05D006866 ORTHO05D008689 4.8e-39 164.9 136 58.8
EL10Ac8g19312 Beta vulgaris HOM05D006866 ORTHO05D008689 6.3e-39 164.5 126 61.1
Sp4g17360 Schrenkiella parvula HOM05D006866 ORTHO05D008689 8.2e-39 164.1 127 58.3
AT2G35130 Arabidopsis thaliana HOM05D006866 ORTHO05D008689 1.4e-38 163.3 131 58.0
BraA05t20001Z Brassica rapa HOM05D006866 ORTHO05D008689 2.4e-38 162.5 137 56.2
Phvul.007G021100 Phaseolus vulgaris HOM05D006866 ORTHO05D008689 2.0e-37 159.5 100 73.0
ECA232G0121 Erigeron canadensis HOM05D006866 ORTHO05D008689 4.5e-37 158.3 101 72.3
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 4.5e-37 158.3 89 79.8
AUR62006935 Chenopodium quinoa HOM05D006866 ORTHO05D008689 1.0e-36 157.1 104 66.3
THA.LOC104814359 Tarenaya hassleriana HOM05D006866 ORTHO05D008689 3.6e-34 148.7 102 65.7
RhsimUnG0235100 Rhododendron simsii HOM05D006866 ORTHO05D008689 1.5e-32 143.3 127 55.1
HanXRQChr09g0258331 Helianthus annuus HOM05D006866 ORTHO05D008689 3.2e-27 125.6 80 72.5
Ca_25672_v3 Cicer arietinum L. HOM05D006866 ORTHO05D008689 5.5e-27 124.8 92 64.1
CSS0001165 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 6.8e-25 117.9 54 96.3
CSS0037136 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.5e-24 116.7 54 94.4
Lj2A350T60 Lonicera japonica HOM05D006866 ORTHO05D008689 3.4e-24 115.5 108 58.3
CAN.G27.8 Capsicum annuum HOM05D006866 ORTHO05D008689 4.4e-24 115.2 82 68.3
AUR62006933 Chenopodium quinoa HOM05D006866 ORTHO05D008689 1.1e-22 110.5 66 68.2
Haze_06061 Corylus avellana HOM05D006866 ORTHO05D008689 4.1e-22 108.6 86 59.3
TAR626G0654 Trochodendron aralioides HOM05D006866 ORTHO05D008689 1.0e-20 104.0 54 83.3
Actinidia22399 Actinidia chinensis HOM05D006866 ORTHO05D008689 2.9e-20 102.4 53 84.9
MD10G1231700 Malus domestica HOM05D006866 ORTHO05D008689 6.6e-20 101.3 53 83.0
CAN.G1114.2 Capsicum annuum HOM05D006866 ORTHO05D008689 1.1e-19 100.5 138 43.5
Lsat_1_v5_gn_8_117320 Lactuca sativa HOM05D006866 ORTHO05D008689 1.1e-19 100.5 55 80.0
Prupe.4G112600 Prunus persica HOM05D006866 ORTHO05D008689 1.1e-19 100.5 53 81.1
FvH4_3g12360 Fragaria vesca HOM05D006866 ORTHO05D008689 1.5e-19 100.1 54 77.8
FAN21G0631 Fragaria x ananassa HOM05D006866 ORTHO05D008689 1.5e-19 100.1 54 77.8
TWI38G1826 Tripterygium wilfordii HOM05D006866 ORTHO05D008689 1.5e-19 100.1 53 81.1
vmacro03523 Vaccinium macrocarpon HOM05D006866 ORTHO05D008689 1.5e-19 100.1 58 75.9
GSVIVG01012065001 Vitis vinifera HOM05D006866 ORTHO05D008689 1.5e-19 100.1 53 81.1
DCAR_001319 Daucus carota HOM05D006866 ORTHO05D008689 1.9e-19 99.8 54 79.6
Thecc.06G143300 Theobroma cacao HOM05D006866 ORTHO05D008689 5.5e-19 98.2 56 76.8
EL10Ac4g09707 Beta vulgaris HOM05D006866 ORTHO05D008689 9.5e-19 97.4 55 72.7
FAN25G0624 Fragaria x ananassa HOM05D006866 ORTHO05D008689 9.5e-19 97.4 53 77.4
Cpa.g.sc135.7 Carica papaya HOM05D006866 ORTHO05D008689 1.6e-18 96.7 68 66.2
COL.COLO4_30996 Corchorus olitorius HOM05D006866 ORTHO05D008689 1.6e-18 96.7 56 75.0
Cc09_g06040 Coffea canephora HOM05D006866 ORTHO05D008689 2.1e-18 96.3 53 81.1
Potri.012G123600 Populus trichocarpa HOM05D006866 ORTHO05D008689 3.6e-18 95.5 55 72.7
Duzib160G0228 Durio zibethinus HOM05D006866 ORTHO05D008689 6.1e-18 94.7 55 74.5
RcHm_v2.0_Chr5g0020151 Rosa chinensis HOM05D006866 ORTHO05D008689 6.1e-18 94.7 53 75.5
Dinv01379 Davidia involucrata HOM05D006866 ORTHO05D008689 8.0e-18 94.4 53 77.4
Nn7g38175 Nelumbo nucifera HOM05D006866 ORTHO05D008689 8.0e-18 94.4 55 74.5
Gohir.A10G044500 Gossypium hirsutum HOM05D006866 ORTHO05D008689 1.4e-17 93.6 56 75.0
Manes.13G080558 Manihot esculenta HOM05D006866 ORTHO05D008689 1.4e-17 93.6 55 72.7
Sabra12G0093100 Salix brachista HOM05D006866 ORTHO05D008689 1.8e-17 93.2 55 70.9
MBI18_g11481_MAGBIO Magnolia biondii HOM05D006866 ORTHO05D008689 2.3e-17 92.8 52 78.8
CiPaw.10G064300 Carya illinoinensis HOM05D006866 ORTHO05D008689 3.0e-17 92.4 53 73.6
Sabra12G0093800 Salix brachista HOM05D006866 ORTHO05D008689 3.0e-17 92.4 54 72.2
arahy.Tifrunner.gnm1.ann1.0F554D Arachis hypogaea HOM05D006866 ORTHO05D008689 4.0e-17 92.0 60 73.3
arahy.Tifrunner.gnm1.ann1.X32MFV Arachis hypogaea HOM05D006866 ORTHO05D008689 4.0e-17 92.0 60 73.3
Cfa000706 Carpinus fangiana HOM05D006866 ORTHO05D008689 4.0e-17 92.0 53 73.6
CANSAT35G0964 Cannabis sativa HOM05D006866 ORTHO05D008689 5.2e-17 91.7 53 73.6
Oeu060351.1 Olea europaea HOM05D006866 ORTHO05D008689 6.8e-17 91.3 54 72.2
Eucgr.D00981 Eucalyptus grandis HOM05D006866 ORTHO05D008689 8.9e-17 90.9 53 73.6
Gohir.D10G045700 Gossypium hirsutum HOM05D006866 ORTHO05D008689 8.9e-17 90.9 56 71.4
Gorai.011G048600 Gossypium raimondii HOM05D006866 ORTHO05D008689 8.9e-17 90.9 56 71.4
Nitab4.5_0001288g0160 Nicotiana tabacum HOM05D006866 ORTHO05D008689 8.9e-17 90.9 55 76.4
CDE01G0264 Ceratophyllum demersum HOM05D006866 ORTHO05D008689 1.5e-16 90.1 54 77.8
Zm00001eb233080 Zea mays HOM05D006866 ORTHO05D008689 1.5e-16 90.1 53 71.7
Peaxi162Scf00149g00318 Petunia axillaris HOM05D006866 ORTHO05D008689 2.0e-16 89.7 55 72.7
PSO675G2302 Papaver somniferum HOM05D006866 ORTHO05D008689 2.6e-16 89.4 53 69.8
Migut.M01983 Erythranthe guttata HOM05D006866 ORTHO05D008689 3.4e-16 89.0 54 70.4
CAN.G149.30 Capsicum annuum HOM05D006866 ORTHO05D008689 4.4e-16 88.6 55 72.7
QL11p016582 Quercus lobata HOM05D006866 ORTHO05D008689 4.4e-16 88.6 53 71.7
Solyc02g068760.4 Solanum lycopersicum HOM05D006866 ORTHO05D008689 9.8e-16 87.4 55 70.9
Sopen02g017930 Solanum pennellii HOM05D006866 ORTHO05D008689 9.8e-16 87.4 55 70.9
ATR0763G194 Amborella trichopoda HOM05D006866 ORTHO05D008689 1.3e-15 87.0 52 76.9
Lj5g0008795 Lotus japonicus HOM05D006866 ORTHO05D008689 1.3e-15 87.0 54 72.2
TPR.G2448 Trifolium pratense HOM05D006866 ORTHO05D008689 1.7e-15 86.7 54 70.4
Glyma.20G109800 Glycine max HOM05D006866 ORTHO05D008689 2.2e-15 86.3 52 73.1
PGSC0003DMG400010422 Solanum tuberosum HOM05D006866 ORTHO05D008689 2.2e-15 86.3 55 70.9
Sed0016966 Sechium edule HOM05D006866 ORTHO05D003855 2.8e-15 85.9 53 69.8
VMungo0720G0148 Vigna mungo HOM05D006866 ORTHO05D008689 2.8e-15 85.9 52 73.1
ClCG01G009530 Citrullus lanatus HOM05D006866 ORTHO05D008689 4.9e-15 85.1 53 69.8
MELO3C021744.2 Cucumis melo HOM05D006866 ORTHO05D008689 1.1e-14 84.0 53 67.9
Aqoxy1G01457 Aquilegia oxysepala HOM05D006866 ORTHO05D008689 1.4e-14 83.6 53 66.0
Medtr1g112240 Medicago truncatula HOM05D006866 ORTHO05D008689 1.4e-14 83.6 52 71.2
CsaV3_1G046260 Cucumis sativus L. HOM05D006866 ORTHO05D008689 1.8e-14 83.2 53 66.0
PSO541G3299 Papaver somniferum HOM05D006866 ORTHO05D008689 3.1e-14 82.4 53 64.2
TPR.G2424 Trifolium pratense HOM05D006866 ORTHO05D008689 3.1e-14 82.4 52 69.2
Haze_06053 Corylus avellana HOM05D006866 ORTHO05D008689 7.0e-14 81.3 65 63.1
Psat6g231320 Pisum sativum HOM05D006866 ORTHO05D008689 7.0e-14 81.3 53 66.0
Cfa002018 Carpinus fangiana HOM05D000082 ORTHO05D000038 1.6e-13 80.1 65 63.1
Sabra12G0093000 Salix brachista HOM05D000009 ORTHO05D000008 5.6e-11 71.6 44 70.5
Nitab4.5_0007533g0010 Nicotiana tabacum HOM05D006866 ORTHO05D008689 2.8e-10 69.3 41 78.0
Ciclev10015335m.g Citrus clementina HOM05D006866 ORTHO05D008689 3.6e-10 68.9 40 75.0
Haze_06062 Corylus avellana HOM05D006866 ORTHO05D008689 3.6e-10 68.9 43 69.8
SMO165G0132 Selaginella moellendorffii HOM05D006866 ORTHO05D008689 1.5e-08 63.5 53 47.2
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 4.4e-08 62.0 129 26.4
AagrBONN_evm.TU.Sc2ySwM_362.121 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.8e-08 61.6 123 29.3
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 7.5e-08 61.2 116 29.3
Sabra12G0092900 Salix brachista HOM05D000009 ORTHO05D000008 7.5e-08 61.2 58 50.0
Pp3c6_26210 Physcomitrium patens HOM05D006866 ORTHO05D008689 9.8e-08 60.8 57 47.4
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 9.8e-08 60.8 122 25.4
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 9.8e-08 60.8 122 28.7
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 2.2e-07 59.7 94 29.8
ECA240G3926 Erigeron canadensis HOM05D000162 ORTHO05D000090 2.9e-07 59.3 135 25.9
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 2.9e-07 59.3 122 27.0
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 3.7e-07 58.9 108 30.6
Pp3c16_5890 Physcomitrium patens HOM05D006866 ORTHO05D008689 3.7e-07 58.9 51 49.0
PGR142G0989 Punica granatum HOM05D000855 ORTHO05D008530 3.7e-07 58.9 117 29.1
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 4.9e-07 58.5 99 31.3
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 4.9e-07 58.5 116 28.4
THA.LOC104810235 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 4.9e-07 58.5 123 25.2
AUR62000579 Chenopodium quinoa HOM05D006866 ORTHO05D008689 6.4e-07 58.2 38 65.8
Gorai.013G109300 Gossypium raimondii HOM05D000424 ORTHO05D000355 6.4e-07 58.2 123 26.0
PSO063G7612 Papaver somniferum HOM05D000001 ORTHO05D009236 8.3e-07 57.8 85 40.0
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 8.3e-07 57.8 116 28.4
THA.LOC104800234 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 8.3e-07 57.8 123 25.2
Thecc.09G185200 Theobroma cacao HOM05D000424 ORTHO05D002854 8.3e-07 57.8 122 24.6
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 1.1e-06 57.4 121 27.3
CARHR070840 Cardamine hirsuta HOM05D000424 ORTHO05D000355 1.4e-06 57.0 123 24.4
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 1.4e-06 57.0 117 28.2
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 1.4e-06 57.0 94 28.7
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 1.4e-06 57.0 97 34.0
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 1.4e-06 57.0 108 29.6
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 1.4e-06 57.0 105 28.6
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 1.9e-06 56.6 94 28.7
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 1.9e-06 56.6 94 28.7
FvH4_4g21400 Fragaria vesca HOM05D001779 ORTHO05D001753 1.9e-06 56.6 126 26.2
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 1.9e-06 56.6 102 30.4
FAN17G0100 Fragaria x ananassa HOM05D001779 ORTHO05D001753 1.9e-06 56.6 126 27.0
PSO063G3903 Papaver somniferum HOM05D000001 ORTHO05D009236 1.9e-06 56.6 85 38.8
RcHm_v2.0_Chr7g0215971 Rosa chinensis HOM05D000424 ORTHO05D000355 1.9e-06 56.6 123 25.2
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 1.9e-06 56.6 112 28.6
AagrBONN_evm.TU.Sc2ySwM_344.4178 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.4e-06 56.2 123 28.5
SalBow6G3656 Salvia bowleyana HOM05D000424 ORTHO05D000355 2.4e-06 56.2 123 23.6
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 2.4e-06 56.2 125 28.8
SEGI_29245 Sequoiadendron giganteum HOM05D002007 ORTHO05D000355 3.2e-06 55.8 107 31.8
AagrBONN_evm.TU.Sc2ySwM_117.4163 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.1e-06 55.5 123 29.3
AagrBONN_evm.TU.Sc2ySwM_344.49 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.1e-06 55.5 123 29.3
AagrBONN_evm.TU.Sc2ySwM_362.1849 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.1e-06 55.5 122 29.5
AagrBONN_evm.TU.Sc2ySwM_368.1444 Anthoceros agrestis HOM05D006866 ORTHO05D008689 4.1e-06 55.5 52 46.2
Carub.0002s2424 Capsella rubella HOM05D000424 ORTHO05D000355 4.1e-06 55.5 123 24.4
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 4.1e-06 55.5 100 33.0
COL.COLO4_04875 Corchorus olitorius HOM05D001779 ORTHO05D001753 4.1e-06 55.5 137 27.0
Eucgr.F03831 Eucalyptus grandis HOM05D000424 ORTHO05D000355 4.1e-06 55.5 123 22.8
FAN12G4042 Fragaria x ananassa HOM05D001779 ORTHO05D001753 4.1e-06 55.5 126 26.2
Mapoly0059s0080 Marchantia polymorpha HOM05D001779 ORTHO05D023528 4.1e-06 55.5 121 28.1
PSO210G0586 Papaver somniferum HOM05D001779 ORTHO05D001753 4.1e-06 55.5 132 28.8
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 4.1e-06 55.5 101 31.7
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 4.1e-06 55.5 131 28.2
AagrBONN_evm.TU.Sc2ySwM_369.227 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.4e-06 55.1 123 29.3
AT1G77360 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 5.4e-06 55.1 123 23.6
CBR_g19478 Chara braunii HOM05D006877 ORTHO05D000003 5.4e-06 55.1 129 29.5
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 5.4e-06 55.1 112 23.2
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 5.4e-06 55.1 97 33.0
Thhalv10018469m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 5.4e-06 55.1 123 24.4
Gohir.A02G110000 Gossypium hirsutum HOM05D000424 ORTHO05D000355 5.4e-06 55.1 123 25.2
Lj4g0024045 Lotus japonicus HOM05D001779 ORTHO05D001753 5.4e-06 55.1 128 28.1
LjContig00141g0004174 Lotus japonicus HOM05D002479 ORTHO05D002675 5.4e-06 55.1 80 31.2
AL2G37560 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 7.0e-06 54.7 123 24.4
COL.COLO4_05687 Corchorus olitorius HOM05D000424 ORTHO05D000355 7.0e-06 54.7 123 26.0
DCAR_020087 Daucus carota HOM05D006258 ORTHO05D007961 7.0e-06 54.7 77 35.1
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 7.0e-06 54.7 116 25.9
Glyma.13G227000 Glycine max HOM05D000424 ORTHO05D002854 7.0e-06 54.7 122 27.0
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 7.0e-06 54.7 97 33.0
PSO761G0432 Papaver somniferum HOM05D001779 ORTHO05D001753 7.0e-06 54.7 132 28.8
SGA_v2.0_scaffold8G04573 Striga asiatica HOM05D000424 ORTHO05D002854 7.0e-06 54.7 122 26.2
Zm00001eb248020 Zea mays HOM05D000891 ORTHO05D000761 7.0e-06 54.7 120 25.0
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 9.2e-06 54.3 99 30.3
EL10Ac3g06265 Beta vulgaris HOM05D001779 ORTHO05D001753 9.2e-06 54.3 128 28.9
CDE02G4775 Ceratophyllum demersum HOM05D000424 ORTHO05D002854 9.2e-06 54.3 122 26.2
Haze_03158 Corylus avellana HOM05D001779 ORTHO05D001753 9.2e-06 54.3 139 28.8
FAN07G0256 Fragaria x ananassa HOM05D001779 ORTHO05D001753 9.2e-06 54.3 126 26.2
Glyma.08G174800 Glycine max HOM05D002479 ORTHO05D002675 9.2e-06 54.3 80 31.2
Gohir.D11G249600 Gossypium hirsutum HOM05D000001 ORTHO05D000003 9.2e-06 54.3 113 30.1
Gorai.007G267400 Gossypium raimondii HOM05D000001 ORTHO05D000003 9.2e-06 54.3 113 30.1
PGR042G3217 Punica granatum HOM05D000424 ORTHO05D000355 9.2e-06 54.3 123 25.2
Sp5g32520 Schrenkiella parvula HOM05D000424 ORTHO05D000355 9.2e-06 54.3 123 24.4
Sc10g0008050 Simmondsia chinensis HOM05D000424 ORTHO05D000355 9.2e-06 54.3 123 24.4
TAR374G0752 Trochodendron aralioides HOM05D000424 ORTHO05D000355 9.2e-06 54.3 123 25.2
Zm00001eb298940 Zea mays HOM05D001779 ORTHO05D001753 9.2e-06 54.3 131 26.0


User provided reference genes

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