Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.4e-190 669.5 340 100.0
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.4e-190 669.5 340 100.0
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 4.5e-157 558.1 343 82.5
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 5.9e-157 557.8 340 81.8
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 6.5e-156 554.3 340 79.7
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 8.8e-153 543.9 340 79.1
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 4.2e-147 525.0 338 78.1
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 3.5e-141 505.4 337 76.6
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 4.5e-141 505.0 339 74.0
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 2.3e-140 502.7 335 73.4
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 2.3e-140 502.7 341 72.4
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 4.7e-138 495.0 338 73.7
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 4.7e-138 495.0 334 75.1
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 1.2e-136 490.3 338 72.2
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 1.5e-136 490.0 335 72.8
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 9.8e-136 487.3 340 71.5
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 4.9e-135 485.0 339 69.0
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 4.9e-135 485.0 340 70.9
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 8.3e-135 484.2 336 69.6
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 1.1e-134 483.8 340 71.5
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 2.4e-134 482.6 340 70.3
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 4.1e-134 481.9 330 73.0
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 1.2e-133 480.3 346 69.9
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.6e-133 479.9 342 69.0
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 2.0e-133 479.6 337 71.8
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 2.0e-133 479.6 333 70.0
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 3.5e-133 478.8 336 68.2
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 1.3e-132 476.9 343 71.1
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 3.9e-132 475.3 342 70.5
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 6.6e-132 474.6 343 69.7
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 8.6e-132 474.2 334 70.7
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.1e-131 473.8 340 69.1
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.1e-131 473.8 340 68.8
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 5.6e-131 471.5 338 68.9
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 9.5e-131 470.7 335 71.0
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 2.1e-130 469.5 341 69.8
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 2.8e-130 469.2 343 70.0
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 6.2e-130 468.0 335 69.6
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 6.2e-130 468.0 262 87.4
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 6.2e-130 468.0 319 73.7
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 8.0e-130 467.6 333 68.5
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 1.8e-129 466.5 344 67.4
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 2.3e-129 466.1 342 69.3
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 2.3e-129 466.1 345 69.6
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 3.1e-129 465.7 343 68.8
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 6.8e-129 464.5 341 67.4
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.9e-129 464.2 341 67.4
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.9e-129 464.2 341 67.2
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.9e-129 464.2 341 67.4
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 2.0e-128 463.0 339 67.0
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 2.0e-128 463.0 341 67.2
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 2.0e-128 463.0 345 68.1
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 4.4e-128 461.8 336 68.2
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 7.5e-128 461.1 319 72.7
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 4.9e-127 458.4 334 68.0
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 8.3e-127 457.6 337 66.8
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.3e-127 457.6 326 69.0
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 3.2e-126 455.7 339 68.7
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 3.2e-126 455.7 339 66.1
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 3.2e-126 455.7 317 72.9
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 5.4e-126 454.9 339 68.1
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 5.4e-126 454.9 338 67.8
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 1.6e-125 453.4 334 67.4
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 2.1e-125 453.0 345 67.2
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 2.1e-125 453.0 321 70.1
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 2.7e-125 452.6 339 67.0
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 2.7e-125 452.6 339 67.6
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 4.6e-125 451.8 339 67.6
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 4.6e-125 451.8 341 66.3
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 4.6e-125 451.8 338 65.7
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.0e-124 450.7 338 68.0
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 1.7e-124 449.9 341 66.3
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 2.3e-124 449.5 339 67.3
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 2.3e-124 449.5 339 67.3
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 3.9e-124 448.7 339 66.7
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 5.1e-124 448.4 339 66.7
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 6.6e-124 448.0 339 67.0
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 6.6e-124 448.0 339 65.5
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 1.1e-123 447.2 336 67.6
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 1.1e-123 447.2 339 67.0
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 1.5e-123 446.8 334 66.2
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 1.9e-123 446.4 338 67.8
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 3.3e-123 445.7 317 70.0
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 2.1e-122 443.0 317 70.3
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 6.2e-122 441.4 336 66.1
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 8.1e-122 441.0 341 66.0
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 3.1e-121 439.1 338 66.6
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 4.0e-121 438.7 339 66.1
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 6.8e-121 438.0 328 66.5
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 6.8e-121 438.0 328 66.5
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 8.9e-121 437.6 341 65.4
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 1.2e-120 437.2 368 62.2
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 2.0e-120 436.4 334 65.9
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 4.4e-120 435.3 341 65.4
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 2.2e-119 433.0 334 65.6
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.3e-116 423.7 334 65.0
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 3.0e-116 422.5 341 61.9
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 6.6e-116 421.4 339 63.1
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 3.3e-115 419.1 317 67.2
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 3.6e-114 415.6 325 64.3
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.4e-113 413.7 339 63.1
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 4.0e-113 412.1 321 64.5
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 6.8e-113 411.4 327 63.6
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 2.6e-112 409.5 339 61.4
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 4.4e-112 408.7 328 63.4
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 5.1e-108 395.2 336 60.7
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 4.3e-107 392.1 318 61.6
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 5.3e-105 385.2 324 63.3
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 7.1e-102 374.8 288 63.9
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.3e-95 354.0 253 70.0
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 5.3e-89 332.0 321 50.2
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 2.7e-85 319.7 343 46.9
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 1.0e-84 317.8 332 53.0
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 1.1e-75 287.7 340 44.1
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 1.5e-72 277.3 224 62.9
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 2.2e-63 246.9 184 65.8
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 3.8e-63 246.1 184 65.8
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.1e-61 240.4 179 66.5
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 1.8e-60 237.3 317 41.6
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 6.7e-60 235.3 255 50.6
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 1.5e-59 234.2 144 78.5
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 2.5e-54 216.9 159 69.8
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 1.6e-48 197.6 143 68.5
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 1.3e-47 194.5 135 74.1
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 5.0e-47 192.6 289 38.4
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 6.1e-37 159.1 118 66.9
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.8e-36 157.5 99 77.8
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 2.0e-35 154.1 116 66.4
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 5.7e-35 152.5 261 33.7
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 7.5e-35 152.1 121 66.1
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 1.7e-34 151.0 340 30.6
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 2.8e-34 150.2 99 71.7
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.8e-33 147.5 199 41.2
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 1.8e-33 147.5 121 57.9
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 7.0e-33 145.6 98 75.5
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 1.6e-32 144.4 98 74.5
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 2.7e-32 143.7 98 74.5
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 2.7e-32 143.7 98 74.5
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 1.0e-31 141.7 295 37.3
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 5.0e-31 139.4 165 42.4
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.9e-30 137.5 171 45.0
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 2.2e-26 124.0 174 40.8
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 5.4e-25 119.4 84 72.6
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 5.4e-25 119.4 84 72.6
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 2.3e-23 114.0 121 50.4
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 5.0e-23 112.8 140 46.4
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.2e-21 108.2 135 48.1
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 4.4e-19 99.8 113 45.1
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 2.4e-17 94.0 99 49.5
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 2.3e-15 87.4 125 46.4
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 4.0e-12 76.6 79 53.2
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.2e-11 75.1 309 27.8
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 4.9e-10 69.7 56 58.9
Glyma.18G114800 Glycine max HOM05D001610 ORTHO05D001585 2.3e-07 60.8 254 23.2
Phvul.006G027500 Phaseolus vulgaris HOM05D001610 ORTHO05D001585 5.1e-07 59.7 273 23.4
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 1.1e-06 58.5 116 37.9
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 1.9e-06 57.8 224 27.2
arahy.Tifrunner.gnm1.ann1.ER1LI4 Arachis hypogaea HOM05D001610 ORTHO05D001585 2.5e-06 57.4 260 23.5
Haze_24746 Corylus avellana HOM05D001610 ORTHO05D001585 2.5e-06 57.4 284 25.0
arahy.Tifrunner.gnm1.ann1.C265D9 Arachis hypogaea HOM05D001610 ORTHO05D001585 3.3e-06 57.0 260 23.5
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 3.3e-06 57.0 40 65.0
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 3.3e-06 57.0 116 34.5
Glyma.08G304300 Glycine max HOM05D001610 ORTHO05D001585 5.6e-06 56.2 274 23.0
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 7.3e-06 55.8 37 70.3
TPR.G8785 Trifolium pratense HOM05D001610 ORTHO05D001585 9.5e-06 55.5 280 23.2


User provided reference genes

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