Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.9e-102 375.2 180 100.0
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 2.2e-86 322.4 190 83.7
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 1.4e-85 319.7 188 84.0
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.9e-85 319.3 188 83.5
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.4e-85 318.9 187 84.0
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.4e-85 318.9 187 84.0
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.4e-85 318.9 187 84.0
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 3.5e-84 315.1 186 83.3
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 4.6e-84 314.7 186 82.3
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 6.0e-84 314.3 190 80.5
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 6.0e-84 314.3 188 81.4
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 1.0e-83 313.5 187 80.7
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.0e-83 313.5 202 78.7
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 1.8e-83 312.8 188 80.3
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 1.8e-83 312.8 190 80.0
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 1.8e-83 312.8 186 82.3
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.8e-83 312.8 186 81.7
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.8e-83 312.8 188 80.3
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 2.3e-83 312.4 188 80.3
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 3.9e-83 311.6 187 80.2
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 3.9e-83 311.6 187 80.2
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 3.9e-83 311.6 187 80.2
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 5.1e-83 311.2 185 81.1
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 5.1e-83 311.2 190 78.9
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 5.1e-83 311.2 185 82.2
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 6.7e-83 310.8 186 81.2
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 6.7e-83 310.8 185 81.6
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 8.7e-83 310.5 186 80.6
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 8.7e-83 310.5 186 80.6
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.7e-83 310.5 186 80.1
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 1.1e-82 310.1 185 81.1
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.1e-82 310.1 186 81.7
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 1.5e-82 309.7 185 81.1
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.5e-82 309.7 183 82.0
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 1.5e-82 309.7 186 80.6
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 1.5e-82 309.7 186 80.6
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.5e-82 309.7 187 81.8
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 1.5e-82 309.7 185 81.6
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 1.5e-82 309.7 185 80.5
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 1.9e-82 309.3 191 80.6
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 1.9e-82 309.3 184 81.5
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.9e-82 309.3 184 81.5
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.9e-82 309.3 184 81.5
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.9e-82 309.3 184 81.5
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.9e-82 309.3 184 81.5
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.9e-82 309.3 187 81.8
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 1.9e-82 309.3 186 80.6
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 1.9e-82 309.3 186 79.6
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 2.5e-82 308.9 184 81.0
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 2.5e-82 308.9 184 81.0
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 2.5e-82 308.9 188 80.3
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 2.5e-82 308.9 186 79.6
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 2.5e-82 308.9 185 81.1
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 2.5e-82 308.9 186 79.6
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 2.5e-82 308.9 184 81.0
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.5e-82 308.9 185 80.5
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 3.3e-82 308.5 184 81.0
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 3.3e-82 308.5 186 79.0
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 4.3e-82 308.1 186 78.5
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 4.3e-82 308.1 187 79.1
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 4.3e-82 308.1 186 80.1
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 4.3e-82 308.1 190 78.9
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 5.6e-82 307.8 187 79.1
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.6e-82 307.8 190 77.9
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 5.6e-82 307.8 186 79.0
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 5.6e-82 307.8 187 79.7
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 5.6e-82 307.8 184 81.5
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 7.4e-82 307.4 183 80.9
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 7.4e-82 307.4 186 79.0
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 7.4e-82 307.4 183 81.4
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 7.4e-82 307.4 183 81.4
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 7.4e-82 307.4 186 79.0
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 7.4e-82 307.4 185 80.5
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 9.6e-82 307.0 190 78.4
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 9.6e-82 307.0 190 78.9
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 9.6e-82 307.0 190 78.9
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 1.3e-81 306.6 185 81.1
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 1.3e-81 306.6 186 79.6
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.3e-81 306.6 186 78.5
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 1.3e-81 306.6 185 78.4
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.3e-81 306.6 185 80.5
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.3e-81 306.6 185 80.5
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 1.6e-81 306.2 185 81.1
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 2.1e-81 305.8 184 81.0
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 2.1e-81 305.8 186 78.5
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 2.1e-81 305.8 184 80.4
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 2.1e-81 305.8 184 80.4
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 3.7e-81 305.1 185 79.5
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 3.7e-81 305.1 185 78.9
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 4.8e-81 304.7 185 79.5
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 4.8e-81 304.7 184 80.4
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 6.2e-81 304.3 185 80.0
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 6.2e-81 304.3 185 79.5
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 6.2e-81 304.3 184 80.4
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 6.2e-81 304.3 185 78.9
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 8.1e-81 303.9 188 76.1
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 8.1e-81 303.9 188 76.1
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 8.1e-81 303.9 188 76.1
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.1e-80 303.5 185 78.9
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 1.1e-80 303.5 186 77.4
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.1e-80 303.5 185 80.5
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 1.4e-80 303.1 185 80.5
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 1.4e-80 303.1 185 78.4
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.4e-80 303.1 184 80.4
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 1.8e-80 302.8 186 77.4
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.8e-80 302.8 185 77.8
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.4e-80 302.4 185 78.4
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 3.1e-80 302.0 188 75.0
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 3.1e-80 302.0 190 75.8
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 4.0e-80 301.6 186 76.9
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 5.3e-80 301.2 185 79.5
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 6.9e-80 300.8 188 75.5
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 6.9e-80 300.8 188 75.5
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 6.9e-80 300.8 185 78.9
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 9.0e-80 300.4 188 76.6
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 9.0e-80 300.4 184 77.7
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 1.5e-79 299.7 186 76.9
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 1.5e-79 299.7 186 76.9
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.5e-79 299.7 210 71.9
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 1.5e-79 299.7 185 78.4
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 2.6e-79 298.9 188 75.5
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 2.6e-79 298.9 188 75.5
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 2.6e-79 298.9 188 75.5
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 4.5e-79 298.1 185 76.2
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 7.6e-79 297.4 193 75.6
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 1.0e-78 297.0 188 75.5
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 1.7e-78 296.2 188 74.5
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 3.8e-78 295.0 186 76.3
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 4.9e-78 294.7 186 77.4
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 6.5e-78 294.3 188 73.9
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 1.1e-77 293.5 185 75.1
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.9e-77 292.7 191 78.5
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 7.1e-77 290.8 187 73.8
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 2.7e-76 288.9 181 75.7
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 3.5e-76 288.5 187 74.9
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 7.9e-76 287.3 182 76.4
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 1.9e-74 282.7 253 59.3
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 5.7e-74 281.2 182 75.3
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 3.7e-73 278.5 190 70.5
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 5.5e-69 264.6 182 72.0
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.2e-68 263.5 167 77.2
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 1.0e-67 260.4 191 67.0
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.1e-64 248.4 180 72.8
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 4.1e-64 248.4 152 77.6
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 1.5e-58 229.9 143 78.3
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 2.0e-58 229.6 142 78.2
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 7.4e-58 227.6 139 80.6
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 9.1e-56 220.7 141 76.6
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.6e-55 219.2 130 80.8
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 2.7e-52 209.1 188 62.2
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 3.0e-51 205.7 128 74.2
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 9.7e-50 200.7 163 65.0
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 8.2e-49 197.6 136 70.6
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 2.4e-48 196.1 152 66.4
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 1.0e-46 190.7 188 47.3
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 5.5e-45 184.9 187 49.2
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.8e-41 172.6 90 85.6
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 7.0e-40 167.9 103 73.8
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-39 167.2 90 86.7
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 2.7e-39 166.0 166 56.6
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 7.7e-39 164.5 90 83.3
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.9e-38 162.5 87 82.8
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.9e-38 162.5 87 82.8
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 1.5e-37 160.2 94 76.6
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.5e-37 160.2 87 81.6
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.2e-37 159.1 94 76.6
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 9.4e-37 157.5 87 81.6
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.1e-36 156.4 94 77.7
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.4e-34 148.7 158 54.4
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 3.7e-33 145.6 157 52.9
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.3e-30 137.1 78 78.2
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.4e-26 122.5 69 76.8
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.4e-26 122.5 69 76.8
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.4e-26 122.5 69 76.8
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.4e-26 122.5 69 76.8
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.4e-26 122.5 69 76.8
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.4e-26 122.5 69 76.8
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 3.4e-26 122.5 68 75.0
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 2.7e-23 112.8 96 63.5
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 6.6e-22 108.2 99 58.6
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 1.5e-21 107.1 65 78.5
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 3.9e-14 82.4 44 84.1
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 8.6e-14 81.3 121 42.1
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 1.5e-13 80.5 43 90.7


User provided reference genes

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