Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 2830.4 1465 100.0
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1923.3 1488 71.7
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1730.7 1500 65.1
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1595.5 1479 61.1
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1571.6 1477 60.3
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1567.4 1478 61.4
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1557.7 1518 59.1
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1556.6 1477 59.8
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1547.3 1477 60.4
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1536.5 1479 59.0
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1515.4 1482 57.7
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1500.7 1465 58.3
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1494.6 1477 58.0
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1492.2 1471 57.8
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1491.1 1472 58.1
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1490.7 1544 57.3
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1483.8 1474 58.0
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1454.9 1470 56.8
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 0.0e+00 1444.9 1472 59.1
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1440.2 1533 56.0
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1436.8 1474 56.9
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1427.5 1473 57.1
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1419.1 1493 54.7
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1411.0 1482 55.2
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1408.7 1506 54.6
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1395.6 1532 54.7
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1373.6 1475 55.1
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1372.1 1473 54.3
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1370.1 1465 54.1
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1357.4 1466 53.5
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1347.0 1544 51.9
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1341.6 1507 52.8
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1338.6 1478 52.8
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1330.1 1528 52.0
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1328.5 1496 52.4
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1324.3 1474 52.7
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1313.5 1462 52.1
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1310.0 1465 52.9
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1308.1 1470 52.0
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1299.3 1475 52.7
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1297.3 1480 52.8
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1295.4 1470 52.0
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1294.6 1468 52.0
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1293.9 1470 51.8
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1292.3 1479 53.2
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1276.2 1469 51.8
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1270.8 1537 49.8
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1261.1 1478 50.3
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1260.0 1475 50.9
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1258.0 1433 51.6
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1256.1 1495 50.6
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1251.9 1468 50.7
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1250.3 1465 50.7
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1241.5 1461 50.0
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1240.3 1504 49.7
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1235.7 1468 50.4
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1228.8 1463 50.6
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1225.7 1484 49.5
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1224.9 1507 49.6
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1221.8 1476 50.1
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1221.5 1534 49.8
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1220.7 1462 50.2
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1220.3 1467 50.4
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1216.4 1506 49.0
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1206.4 1514 51.2
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1196.0 1474 48.8
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1195.6 1470 48.5
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1194.5 1467 48.4
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 0.0e+00 1194.5 1102 61.1
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1194.1 1479 48.8
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1192.6 1484 48.8
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1192.2 1470 49.7
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1191.8 1466 49.0
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1191.8 1466 48.4
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1191.4 1492 48.2
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1190.3 1490 48.3
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1186.4 1480 48.7
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1181.0 1480 48.5
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1181.0 1480 48.5
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1181.0 1480 48.5
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1180.6 1504 49.4
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1179.9 1471 48.3
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1169.5 1483 47.7
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1165.6 1467 48.5
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1165.6 1484 47.6
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1156.4 1377 50.3
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1149.8 1466 47.4
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1119.8 1485 46.7
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 0.0e+00 1105.1 927 65.5
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 0.0e+00 1093.2 1490 46.3
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 2.1e-307 1059.7 1473 45.3
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 1.3e-306 1057.0 1466 44.3
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 1.3e-301 1040.4 1172 52.3
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 2.5e-276 956.4 1504 42.1
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 2.7e-275 953.0 1449 43.3
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 1.4e-260 904.0 883 57.3
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 4.0e-250 869.4 1032 52.2
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.0e-250 869.4 748 63.4
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 3.7e-248 862.8 692 66.3
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 3.6e-227 793.1 745 60.1
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 6.6e-221 772.3 644 67.1
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.5e-196 691.4 942 48.4
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.5e-188 664.1 481 70.7
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.8e-187 660.6 867 47.2
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 9.3e-183 645.6 1035 43.4
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 1.2e-174 618.6 803 48.9
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 9.4e-159 565.8 1298 34.0
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 6.1e-158 563.1 1384 32.7
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 7.4e-156 556.2 685 49.1
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 8.2e-155 552.7 647 47.3
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 9.1e-154 549.3 355 78.0
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 5.7e-140 503.4 355 69.0
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 3.8e-136 490.7 1053 34.9
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 6.1e-134 483.4 594 49.2
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 1.5e-132 478.8 1155 31.8
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 6.3e-123 446.8 1292 29.7
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 9.1e-122 443.0 418 52.9
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 6.8e-117 426.8 1222 30.0
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 3.2e-98 364.8 347 52.7
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 6.4e-91 340.5 330 59.7
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 7.8e-89 333.6 326 50.3
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 3.3e-79 301.6 351 49.9
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 5.3e-77 294.3 238 65.1
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.2e-73 283.1 745 31.5
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.1e-71 276.6 387 47.0
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 4.5e-68 264.6 198 73.2
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 9.3e-50 203.8 209 57.4
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.3e-48 199.1 121 80.2
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 3.3e-47 195.3 284 41.5
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 1.1e-42 180.3 355 37.2
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.3e-39 168.7 295 42.0
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 2.6e-36 159.1 283 39.2
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 9.7e-31 140.6 560 24.8
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 4.8e-30 138.3 373 28.4
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 1.5e-26 126.7 249 36.5
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.7e-25 122.5 141 54.6
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 3.6e-25 122.1 90 64.4
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 4.8e-22 111.7 188 42.0
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 3.8e-19 102.1 229 35.4
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 2.3e-16 92.8 104 58.7
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 9.8e-15 87.4 348 27.9
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 3.1e-13 82.4 61 68.9
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.1e-13 82.4 284 26.8
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.7e-11 76.6 83 54.2
MBI17_g19044_MAGBIO Magnolia biondii HOM05D000853 ORTHO05D011152 3.7e-06 58.9 56 53.6
MBI19_g06116_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D036548 3.7e-06 58.9 39 71.8
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 4.9e-06 58.5 470 21.3
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.9e-06 58.5 46 67.4


User provided reference genes

Program Settings