Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019415 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 6.6e-99 364.0 180 100.0
CSS0002631 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 5.6e-90 334.3 165 100.0
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 9.0e-72 273.9 165 81.8
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 5.5e-69 264.6 155 82.6
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 4.3e-66 255.0 166 74.7
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 9.7e-66 253.8 156 76.9
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 2.8e-65 252.3 166 74.7
Duzib168G1551 Durio zibethinus HOM05D004148 ORTHO05D004709 3.7e-65 251.9 166 76.5
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 4.8e-65 251.5 166 75.3
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 6.9e-64 247.7 166 74.7
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 1.2e-63 246.9 166 74.7
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 1.5e-63 246.5 166 74.1
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 2.6e-63 245.7 166 73.5
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 3.4e-63 245.4 162 74.1
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 5.9e-63 244.6 160 74.4
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 1.0e-62 243.8 156 76.3
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.0e-62 243.8 156 76.3
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.0e-62 243.8 156 76.3
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 1.4e-61 240.0 157 73.9
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 2.5e-61 239.2 166 71.7
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 3.2e-61 238.8 166 69.9
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 7.2e-61 237.7 161 72.0
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 2.3e-59 232.6 162 69.1
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 3.0e-59 232.3 155 72.3
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 5.1e-59 231.5 164 70.1
Manes.04G054800 Manihot esculenta HOM05D004148 ORTHO05D004709 6.7e-59 231.1 153 73.9
CiPaw.13G126900 Carya illinoinensis HOM05D004148 ORTHO05D004709 9.7e-58 227.3 156 71.2
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 1.7e-57 226.5 165 67.9
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 2.2e-57 226.1 162 68.5
Cpa.g.sc103.96 Carica papaya HOM05D004148 ORTHO05D004709 3.7e-57 225.3 159 69.8
Ca_24340_v3 Cicer arietinum L. HOM05D004148 ORTHO05D004709 2.0e-55 219.5 162 66.0
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 2.0e-55 219.5 160 67.5
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 2.6e-55 219.2 154 67.5
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 8.5e-54 214.2 156 66.0
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 3.2e-53 212.2 166 65.7
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 4.2e-53 211.8 164 64.6
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 1.6e-52 209.9 151 68.9
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 1.6e-52 209.9 153 68.6
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 6.1e-52 208.0 164 63.4
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 7.9e-52 207.6 155 64.5
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 1.4e-51 206.8 166 62.7
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 1.4e-51 206.8 154 65.6
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 1.4e-51 206.8 162 64.8
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 2.3e-51 206.1 163 62.6
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 5.2e-51 204.9 157 63.1
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 6.7e-51 204.5 162 63.0
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 6.7e-51 204.5 154 64.3
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 1.5e-50 203.4 164 64.0
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 7.4e-50 201.1 166 59.6
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 9.7e-50 200.7 160 60.6
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 3.7e-49 198.7 156 61.5
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 3.7e-49 198.7 157 62.4
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 4.8e-49 198.4 162 61.1
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 6.3e-49 198.0 159 62.3
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 1.1e-48 197.2 164 63.4
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 2.4e-48 196.1 159 61.0
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 2.4e-48 196.1 152 62.5
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 2.4e-48 196.1 166 59.0
Carub.0005s0933 Capsella rubella HOM05D004148 ORTHO05D004709 7.0e-48 194.5 162 58.6
AUR62001591 Chenopodium quinoa HOM05D004148 ORTHO05D004709 7.0e-48 194.5 152 64.5
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 2.0e-47 193.0 163 60.1
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 2.0e-47 193.0 166 60.2
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 3.5e-47 192.2 162 56.8
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 3.5e-47 192.2 166 59.6
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 1.0e-46 190.7 161 57.8
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 1.0e-46 190.7 161 57.8
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 1.0e-46 190.7 161 57.8
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 1.7e-46 189.9 153 62.1
CARHR108680 Cardamine hirsuta HOM05D004148 ORTHO05D004709 5.0e-46 188.3 162 57.4
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 5.0e-46 188.3 166 59.6
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 3.2e-45 185.7 166 60.2
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 7.2e-45 184.5 159 57.9
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 9.4e-45 184.1 164 56.1
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 1.2e-44 183.7 166 58.4
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 1.6e-44 183.3 158 55.1
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 2.1e-44 183.0 166 56.0
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 5.2e-43 178.3 158 55.1
FvH4_3g27030 Fragaria vesca HOM05D004148 ORTHO05D004709 5.2e-43 178.3 126 71.4
FAN11G3429 Fragaria x ananassa HOM05D004148 ORTHO05D004709 5.2e-43 178.3 126 71.4
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 2.0e-42 176.4 148 60.1
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 3.3e-42 175.6 158 53.2
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 1.0e-35 154.1 109 69.7
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 3.0e-35 152.5 137 56.9
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 5.2e-35 151.8 159 49.1
Os04g0566800 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 2.0e-34 149.8 156 50.0
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 1.3e-33 147.1 167 46.1
AUR62038878 Chenopodium quinoa HOM05D000413 ORTHO05D004709 6.3e-33 144.8 119 62.2
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 1.8e-32 143.3 129 55.0
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 2.4e-32 142.9 165 46.1
unitig_21.g20311 Utricularia gibba HOM05D004148 ORTHO05D004709 1.6e-31 140.2 155 45.8
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 1.3e-30 137.1 128 53.9
VMungo1215G1724 Vigna mungo HOM05D004148 ORTHO05D004709 5.0e-30 135.2 106 61.3
vmacro04062 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 8.0e-28 127.9 82 75.6
HPP92_019533 Vanilla planifolia HOM05D004148 ORTHO05D004709 2.0e-26 123.2 120 52.5
arahy.Tifrunner.gnm1.ann1.JMUS5L Arachis hypogaea HOM05D004148 ORTHO05D004709 1.3e-25 120.6 112 54.5
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 1.3e-22 110.5 108 56.5
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 1.8e-19 100.1 55 85.5
Mapoly0099s0003 Marchantia polymorpha HOM05D004148 ORTHO05D004709 2.3e-19 99.8 152 35.5
Pp3c11_24620 Physcomitrium patens HOM05D004148 ORTHO05D004709 4.0e-19 99.0 148 35.1
MD03G1162300 Malus domestica HOM05D004148 ORTHO05D004709 4.4e-18 95.5 55 83.6
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 7.5e-18 94.7 55 81.8
Nitab4.5_0000615g0100 Nicotiana tabacum HOM05D004148 ORTHO05D004709 5.4e-16 88.6 94 48.9
AagrBONN_evm.TU.Sc2ySwM_228.375 Anthoceros agrestis HOM05D004148 ORTHO05D004709 4.6e-15 85.5 161 34.8
TPR.G37606 Trifolium pratense HOM05D000247 ORTHO05D003114 4.6e-15 85.5 78 53.8
CARHR148460 Cardamine hirsuta HOM05D004148 ORTHO05D004709 1.7e-14 83.6 87 55.2
Eucgr.B03796 Eucalyptus grandis HOM05D004148 ORTHO05D004709 5.2e-11 72.0 69 52.2
Zm00001eb254140 Zea mays HOM05D004148 ORTHO05D004709 3.2e-08 62.8 86 38.4
Zm00001eb328610 Zea mays HOM05D004148 ORTHO05D004709 3.2e-08 62.8 68 44.1
Nitab4.5_0000615g0090 Nicotiana tabacum HOM05D004148 ORTHO05D004709 4.1e-08 62.4 34 82.4
arahy.Tifrunner.gnm1.ann1.J94639 Arachis hypogaea HOM05D004148 ORTHO05D004709 7.0e-08 61.6 35 77.1
TPR.G26857 Trifolium pratense HOM05D004148 ORTHO05D004709 3.5e-07 59.3 53 56.6
RcHm_v2.0_Chr6g0285361 Rosa chinensis HOM05D004148 ORTHO05D004709 7.8e-07 58.2 28 92.9


User provided reference genes

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