Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.1e-147 526.6 255 100.0
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.1e-147 526.6 255 100.0
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 3.4e-133 478.4 255 89.0
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.5e-133 478.0 253 89.7
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 9.3e-131 470.3 279 83.5
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 7.1e-123 444.1 253 83.4
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 4.6e-122 441.4 253 83.4
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 7.9e-122 440.7 251 82.9
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 1.3e-121 439.9 255 82.7
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 6.7e-121 437.6 255 81.6
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 1.1e-120 436.8 250 82.4
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 3.3e-120 435.3 252 83.3
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 1.3e-119 433.3 252 83.3
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 8.2e-119 430.6 253 81.8
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.1e-118 430.3 253 81.8
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.1e-118 430.3 253 81.8
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.8e-118 429.5 253 80.2
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 2.4e-118 429.1 253 80.2
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 2.4e-118 429.1 254 81.5
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 2.4e-118 429.1 250 81.6
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 3.1e-118 428.7 252 81.7
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 5.3e-118 427.9 254 81.1
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 6.9e-118 427.6 243 82.7
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.2e-117 426.8 252 81.0
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.5e-117 426.4 248 81.0
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.5e-117 426.4 254 80.7
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 1.0e-116 423.7 254 78.3
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.7e-116 422.9 253 80.2
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 2.2e-116 422.5 253 79.4
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 2.2e-116 422.5 257 80.2
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 2.2e-116 422.5 252 81.7
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 2.9e-116 422.2 250 80.4
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 1.1e-115 420.2 252 80.2
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 3.2e-115 418.7 224 89.7
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.2e-114 416.8 278 73.4
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 1.2e-114 416.8 253 79.8
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.2e-114 416.8 247 80.2
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.6e-114 416.4 248 79.0
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 2.1e-114 416.0 250 80.0
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 2.7e-114 415.6 255 78.8
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 3.6e-114 415.2 251 78.9
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 3.6e-114 415.2 250 79.2
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 3.6e-114 415.2 254 78.3
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 4.6e-114 414.8 251 80.9
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 4.6e-114 414.8 253 79.8
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 6.1e-114 414.5 253 79.8
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 7.9e-114 414.1 250 79.2
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 2.3e-113 412.5 254 79.1
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 3.0e-113 412.1 254 79.5
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.9e-113 411.8 243 79.8
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 6.7e-113 411.0 251 79.7
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.5e-112 409.8 250 78.4
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 2.0e-112 409.5 240 82.1
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 2.5e-112 409.1 251 78.1
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 3.3e-112 408.7 240 80.4
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 3.3e-112 408.7 255 78.8
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 2.8e-111 405.6 252 77.8
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 3.7e-111 405.2 252 77.4
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.1e-110 403.7 251 78.1
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.1e-110 403.7 256 75.8
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 1.8e-110 402.9 257 77.8
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 2.4e-110 402.5 251 77.3
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 2.4e-110 402.5 246 77.6
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 3.1e-110 402.1 245 78.8
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 3.1e-110 402.1 245 78.8
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 4.1e-110 401.7 254 76.4
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 6.9e-110 401.0 254 76.8
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 9.1e-110 400.6 255 75.3
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.2e-109 400.2 257 76.3
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.5e-109 399.8 265 75.5
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.0e-109 399.4 243 78.6
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.6e-109 399.1 243 78.6
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 2.6e-109 399.1 253 75.5
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 4.5e-109 398.3 241 79.3
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 5.9e-109 397.9 241 78.4
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 7.7e-109 397.5 253 75.1
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 2.2e-108 396.0 255 75.3
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 2.2e-108 396.0 245 79.2
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 2.2e-108 396.0 245 79.2
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 5.0e-108 394.8 252 75.4
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 6.5e-108 394.4 240 78.3
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 6.5e-108 394.4 245 77.6
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 8.5e-108 394.0 251 76.9
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 4.2e-107 391.7 240 77.9
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 4.2e-107 391.7 240 77.9
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 4.2e-107 391.7 240 77.9
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 5.5e-107 391.3 255 74.5
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 7.2e-107 391.0 257 73.9
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.6e-106 389.8 254 75.6
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 1.0e-105 387.1 253 75.1
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.4e-105 386.7 251 76.1
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 3.0e-105 385.6 247 76.1
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 2.6e-104 382.5 250 73.2
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 2.6e-104 382.5 220 81.8
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 3.3e-104 382.1 254 74.0
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 7.4e-104 380.9 248 74.6
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 9.7e-104 380.6 244 74.6
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 8.2e-103 377.5 245 72.7
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 4.1e-102 375.2 237 75.1
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 5.9e-101 371.3 217 80.6
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 2.2e-100 369.4 221 84.6
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 6.5e-100 367.9 250 73.6
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 8.5e-100 367.5 222 78.4
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.9e-99 366.3 220 81.8
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 7.2e-99 364.4 262 70.6
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 8.0e-98 360.9 240 73.8
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 5.2e-97 358.2 218 80.7
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 8.8e-97 357.5 219 79.5
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.5e-96 356.7 220 76.8
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 4.8e-95 351.7 250 69.2
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.4e-94 350.1 219 76.7
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 3.1e-94 349.0 225 75.1
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.7e-92 343.2 268 66.8
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.9e-92 342.4 241 71.0
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.9e-92 342.4 218 77.1
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 3.8e-92 342.0 232 73.3
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 2.5e-91 339.3 221 80.1
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 3.6e-90 335.5 272 64.0
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 8.8e-89 330.9 218 75.7
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 2.2e-87 326.2 250 62.4
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.4e-81 307.0 192 77.1
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 3.7e-79 298.9 230 66.1
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.9e-75 286.6 161 80.7
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 4.7e-74 282.0 171 80.7
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.5e-72 276.9 254 56.3
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 3.9e-68 262.3 165 79.4
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 2.5e-67 259.6 231 55.0
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 7.3e-67 258.1 218 64.2
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 2.8e-66 256.1 172 66.9
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 1.9e-62 243.4 228 59.6
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 9.2e-62 241.1 216 59.3
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 5.6e-59 231.9 140 78.6
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.2e-56 224.2 231 49.8
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 3.4e-56 222.6 143 74.8
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 5.8e-56 221.9 154 70.8
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 5.8e-56 221.9 154 70.8
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 4.1e-54 215.7 126 84.9
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.0e-52 211.1 136 76.5
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 3.9e-52 209.1 163 67.5
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 3.3e-51 206.1 160 66.2
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 2.0e-48 196.8 116 81.9
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 4.4e-48 195.7 240 45.0
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.2e-45 187.6 116 76.7
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.2e-45 187.6 174 59.2
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 4.0e-41 172.6 151 55.6
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.5e-40 170.6 252 36.9
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.3e-39 167.5 119 73.9
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.4e-38 163.3 109 65.1
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 1.6e-37 160.6 160 51.2
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 1.0e-36 157.9 137 58.4
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 2.1e-34 150.2 168 49.4
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 5.3e-33 145.6 155 49.7
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 2.0e-32 143.7 164 50.0
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 2.0e-32 143.7 164 50.0
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 4.4e-32 142.5 164 50.0
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 6.0e-29 132.1 82 75.6
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 2.3e-28 130.2 130 56.9
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 4.3e-27 125.9 82 73.2
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.1e-25 121.3 95 58.9
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.4e-22 110.9 65 69.2
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 9.3e-22 108.2 69 63.8
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 9.3e-22 108.2 68 66.2
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 9.3e-22 108.2 123 48.8
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 4.6e-21 105.9 106 48.1
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.8e-20 104.0 79 62.0
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 3.9e-20 102.8 63 68.3
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 3.9e-20 102.8 63 68.3
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 8.7e-20 101.7 69 60.9
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.6e-18 97.4 62 66.1
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 2.1e-18 97.1 103 45.6
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 2.8e-18 96.7 68 61.8
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 2.8e-18 96.7 68 61.8
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 5.3e-17 92.4 108 58.3
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 6.9e-17 92.0 66 59.1
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 6.9e-17 92.0 66 59.1
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 2.0e-16 90.5 70 68.6
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 4.5e-16 89.4 110 38.2
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 3.8e-15 86.3 209 36.8
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 2.5e-14 83.6 82 56.1
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 2.4e-09 67.0 50 70.0
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 2.2e-07 60.5 67 53.7
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 5.0e-07 59.3 70 44.3
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 8.4e-07 58.5 71 47.9
Sabra12G0049400 Salix brachista HOM05D000650 ORTHO05D000735 3.2e-06 56.6 63 52.4


User provided reference genes

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