Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019318 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 3.1e-234 814.7 389 100.0
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 4.9e-200 701.0 369 90.0
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 1.4e-199 699.5 369 88.9
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 5.5e-199 697.6 369 88.1
Hma1.2p1_1378F.1_g279185 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 4.1e-194 681.4 369 86.4
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 1.1e-191 673.3 374 83.4
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 3.6e-190 668.3 369 83.2
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 6.7e-189 664.1 369 82.1
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 6.7e-189 664.1 369 82.1
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 8.8e-189 663.7 369 82.7
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 1.1e-188 663.3 369 84.0
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 3.7e-187 658.3 385 79.7
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 4.8e-187 657.9 369 82.4
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 4.8e-187 657.9 369 82.1
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 6.3e-187 657.5 369 82.1
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 7.7e-185 650.6 371 80.9
Glyma.12G196800 Glycine max HOM05D003463 ORTHO05D004206 7.7e-185 650.6 369 80.8
TAR627G0487 Trochodendron aralioides HOM05D003463 ORTHO05D004206 1.3e-184 649.8 386 79.3
Glyma.13G305000 Glycine max HOM05D003463 ORTHO05D004206 1.7e-184 649.4 369 81.0
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 2.2e-184 649.0 369 81.3
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 3.8e-184 648.3 369 80.5
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 6.5e-184 647.5 369 81.3
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 8.5e-184 647.1 424 75.0
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 1.1e-183 646.7 369 79.9
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 1.1e-183 646.7 369 81.0
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 1.4e-183 646.4 369 81.0
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 1.9e-183 646.0 369 79.9
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 3.2e-183 645.2 369 81.0
Sed0025509 Sechium edule HOM05D003463 ORTHO05D004206 3.2e-183 645.2 369 80.8
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 2.1e-182 642.5 369 80.8
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 3.6e-182 641.7 369 81.6
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 6.1e-182 641.0 369 79.7
Solyc07g052940.4 Solanum lycopersicum HOM05D003463 ORTHO05D004206 1.4e-181 639.8 369 79.7
Sopen07g026490 Solanum pennellii HOM05D003463 ORTHO05D004206 1.4e-181 639.8 369 79.7
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 1.8e-181 639.4 410 74.1
MELO3C018791.2 Cucumis melo HOM05D003463 ORTHO05D004206 1.8e-181 639.4 368 80.2
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 5.1e-181 637.9 369 80.8
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 5.1e-181 637.9 369 79.1
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 8.8e-181 637.1 369 78.6
ClCG02G001610 Citrullus lanatus HOM05D003463 ORTHO05D004206 2.6e-180 635.6 375 79.5
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 2.6e-180 635.6 369 78.9
CsaV3_7G003880 Cucumis sativus L. HOM05D003463 ORTHO05D004206 3.3e-180 635.2 368 79.9
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 4.4e-180 634.8 369 79.9
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 1.3e-179 633.3 369 79.4
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.3e-179 633.3 368 79.9
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 1.7e-179 632.9 369 78.3
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 1.7e-179 632.9 369 79.1
Sed0018482 Sechium edule HOM05D003463 ORTHO05D004206 2.8e-179 632.1 385 76.9
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 3.7e-179 631.7 369 79.7
Eucgr.A01739 Eucalyptus grandis HOM05D003463 ORTHO05D004206 4.8e-179 631.3 369 79.7
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 4.8e-179 631.3 369 78.9
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 6.3e-179 630.9 369 79.4
Lj3g0021154 Lotus japonicus HOM05D003463 ORTHO05D004206 1.1e-178 630.2 369 78.3
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 1.1e-178 630.2 367 78.2
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 2.4e-178 629.0 368 79.1
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 4.1e-178 628.2 369 77.8
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 7.0e-178 627.5 369 78.9
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 2.0e-177 625.9 369 78.3
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 3.5e-177 625.2 363 79.3
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 5.0e-176 621.3 369 77.0
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 6.5e-176 620.9 369 77.2
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 1.9e-175 619.4 369 78.9
DCAR_021199 Daucus carota HOM05D003463 ORTHO05D004206 2.5e-175 619.0 368 77.7
Hund08062 Selenicereus undatus HOM05D003463 ORTHO05D004206 3.2e-175 618.6 369 78.9
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 4.2e-175 618.2 381 74.8
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 7.2e-175 617.5 369 77.0
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 1.6e-174 616.3 369 76.7
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 2.7e-174 615.5 330 88.8
Sc21g0001820 Simmondsia chinensis HOM05D003463 ORTHO05D004206 2.7e-174 615.5 385 75.3
TWI36G1584 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 2.7e-174 615.5 369 77.5
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 1.8e-173 612.8 369 76.7
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.8e-173 612.8 369 77.2
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 2.3e-173 612.5 369 76.7
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 3.0e-173 612.1 374 75.9
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 5.2e-173 611.3 369 76.7
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 6.7e-173 610.9 369 76.4
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 1.5e-172 609.8 360 77.2
Ah.01g005040 Amaranthus hybridus HOM05D003463 ORTHO05D004206 2.0e-172 609.4 369 77.0
DCAR_009696 Daucus carota HOM05D003463 ORTHO05D004206 1.7e-171 606.3 374 76.7
SGA_v2.0_scaffold34G13880 Striga asiatica HOM05D003463 ORTHO05D004206 2.2e-171 605.9 377 75.3
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 6.3e-171 604.4 369 77.2
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 6.3e-171 604.4 369 76.7
EL10Ac9g22340 Beta vulgaris HOM05D003463 ORTHO05D004206 1.4e-170 603.2 370 77.6
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 3.1e-170 602.1 370 74.1
Thhalv10024183m.g Eutrema salsugineum HOM05D003463 ORTHO05D004206 9.1e-170 600.5 367 74.1
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 1.6e-169 599.7 370 73.5
CARHR221910 Cardamine hirsuta HOM05D003463 ORTHO05D004206 1.3e-168 596.7 367 73.8
Aa31LG8G8660 Aethionema arabicum HOM05D003463 ORTHO05D004206 8.5e-168 594.0 367 73.0
AL7G40500 Arabidopsis lyrata HOM05D003463 ORTHO05D004206 1.5e-167 593.2 367 72.8
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 4.2e-167 591.7 369 74.8
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 1.2e-166 590.1 375 74.7
Sp7g13400 Schrenkiella parvula HOM05D003463 ORTHO05D004206 2.7e-166 589.0 367 73.3
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 3.6e-166 588.6 369 73.7
AT4G15180 Arabidopsis thaliana HOM05D003463 ORTHO05D004206 1.8e-165 586.3 368 72.6
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 2.6e-164 582.4 372 72.0
BcaB02g07835 Brassica carinata HOM05D003463 ORTHO05D004206 2.6e-164 582.4 367 71.1
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 2.6e-164 582.4 371 72.5
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 9.7e-164 580.5 370 71.6
BcaC08g44245 Brassica carinata HOM05D003463 ORTHO05D004206 4.8e-163 578.2 367 70.8
A01p22340 Brassica napus HOM05D003463 ORTHO05D004206 1.1e-162 577.0 367 70.8
C06p16490 Brassica napus HOM05D003463 ORTHO05D004206 1.1e-162 577.0 367 70.6
BolC6t36852H Brassica oleracea HOM05D003463 ORTHO05D004206 1.1e-162 577.0 367 70.6
BraA01t02149Z Brassica rapa HOM05D003463 ORTHO05D004206 1.1e-162 577.0 367 70.8
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 1.1e-162 577.0 371 72.0
ATR0804G005 Amborella trichopoda HOM05D003463 ORTHO05D004206 2.4e-162 575.9 369 72.4
A05p17060 Brassica napus HOM05D003463 ORTHO05D004206 2.4e-162 575.9 367 70.3
BraA05t20607Z Brassica rapa HOM05D003463 ORTHO05D004206 2.4e-162 575.9 367 70.3
BcaNung00300 Brassica carinata HOM05D003463 ORTHO05D004206 1.6e-161 573.2 367 70.3
C01p27890 Brassica napus HOM05D003463 ORTHO05D004206 1.6e-161 573.2 367 70.3
BolC1t02722H Brassica oleracea HOM05D003463 ORTHO05D004206 1.6e-161 573.2 367 70.3
BcaC09g50202 Brassica carinata HOM05D003463 ORTHO05D004206 2.0e-161 572.8 367 70.3
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 9.4e-159 563.9 310 85.2
Eucgr.E02490 Eucalyptus grandis HOM05D003463 ORTHO05D004206 1.2e-156 557.0 366 72.7
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 5.9e-153 544.7 327 75.5
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 1.3e-152 543.5 350 71.7
Os08g0180100 Oryza sativa ssp. japonica HOM05D003463 ORTHO05D004206 1.5e-151 540.0 362 68.2
SHI10282 Sapria himalayana HOM05D003463 ORTHO05D004206 4.7e-150 535.0 359 67.4
Zm00001eb413080 Zea mays HOM05D003463 ORTHO05D004206 8.9e-149 530.8 362 66.6
Zm00001eb171790 Zea mays HOM05D003463 ORTHO05D004206 7.5e-148 527.7 362 66.0
CSS0043747 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 6.3e-147 524.6 276 89.1
Nn7g36849 Nelumbo nucifera HOM05D003463 ORTHO05D004206 2.3e-144 516.2 309 80.3
Cpa.g.sc8.254 Carica papaya HOM05D003463 ORTHO05D004206 1.6e-142 510.0 369 66.9
CSS0039700 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 8.9e-141 504.2 279 86.0
CSS0001270 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 2.6e-140 502.7 279 85.7
Hma1.2p1_2477F.1_g322850 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 3.5e-121 439.1 305 72.1
SEGI_02831 Sequoiadendron giganteum HOM05D003463 ORTHO05D004206 6.8e-117 424.9 363 54.8
unitig_8.g4614 Utricularia gibba HOM05D003463 ORTHO05D004206 1.0e-104 384.4 234 75.6
Actinidia27017 Actinidia chinensis HOM05D003463 ORTHO05D004206 2.0e-92 343.6 205 78.0
Pp3c11_18840 Physcomitrium patens HOM05D003463 ORTHO05D004206 3.4e-92 342.8 367 46.6
Pp3c7_5920 Physcomitrium patens HOM05D003463 ORTHO05D004206 7.1e-90 335.1 367 45.8
Pp3c7_5929 Physcomitrium patens HOM05D003463 ORTHO05D004206 7.1e-90 335.1 367 45.8
Mapoly0021s0105 Marchantia polymorpha HOM05D003463 ORTHO05D004206 6.7e-88 328.6 367 46.3
AagrBONN_evm.TU.Sc2ySwM_117.2770 Anthoceros agrestis HOM05D003463 ORTHO05D004206 7.4e-87 325.1 368 43.8
CSS0016126 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 3.8e-75 286.2 176 80.1
CBR_g54148 Chara braunii HOM05D003463 ORTHO05D004206 6.1e-73 278.9 372 40.1
Nn2g14668 Nelumbo nucifera HOM05D003463 ORTHO05D004206 6.3e-46 189.1 116 75.0
CSS0047242 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 7.7e-44 182.2 102 84.3
SMO135G0001 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 1.5e-39 167.9 154 54.5
SMO365G0046 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 1.5e-39 167.9 154 54.5
HanXRQChr04g0111771 Helianthus annuus HOM05D003463 ORTHO05D004206 3.1e-37 160.2 112 67.9
Nn2g15719 Nelumbo nucifera HOM05D003463 ORTHO05D004206 3.1e-37 160.2 108 70.4
Nn5g27117 Nelumbo nucifera HOM05D003463 ORTHO05D004206 4.7e-33 146.4 102 70.6
Nn5g27119 Nelumbo nucifera HOM05D003463 ORTHO05D004206 4.7e-33 146.4 102 70.6
PRCOL_00001206 Prasinoderma coloniale HOM05D003463 ORTHO05D004206 6.1e-33 146.0 396 27.5
RcHm_v2.0_Chr2g0131031 Rosa chinensis HOM05D003463 ORTHO05D004206 3.7e-30 136.7 103 64.1
Nn5g27118 Nelumbo nucifera HOM05D003463 ORTHO05D004206 2.3e-27 127.5 80 78.8
Nn5g27120 Nelumbo nucifera HOM05D003463 ORTHO05D004206 2.3e-27 127.5 80 78.8
HanXRQChr11g0343651 Helianthus annuus HOM05D001440 ORTHO05D001119 1.9e-26 124.4 78 74.4
DCAR_017230 Daucus carota HOM05D003463 ORTHO05D004206 8.0e-25 119.0 90 64.4
HanXRQChr01g0020431 Helianthus annuus HOM05D002344 ORTHO05D004206 1.2e-23 115.2 83 67.5
HanXRQChr14g0432881 Helianthus annuus HOM05D003463 ORTHO05D004206 5.8e-23 112.8 88 63.6
Sc23g0004320 Simmondsia chinensis HOM05D000588 ORTHO05D000637 4.9e-22 109.8 86 60.5
Nn2g15720 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.6e-17 94.7 58 74.1
MCO02G192 Micromonas commoda HOM05D003463 ORTHO05D004206 2.8e-17 94.0 238 26.5
QL02p024705 Quercus lobata HOM05D003463 ORTHO05D004206 3.3e-10 70.5 124 38.7
Cre17.g742700 Chlamydomonas reinhardtii HOM05D003463 ORTHO05D004206 8.9e-08 62.4 120 25.8
QL04p077387 Quercus lobata HOM05D003463 ORTHO05D004206 2.2e-06 57.8 32 71.9


User provided reference genes

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