Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019235 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D008628 0.0e+00 1191.4 598 100.0
CSS0045163 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D008628 0.0e+00 1088.9 548 98.7
CSS0018925 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D008628 4.5e-253 877.9 600 77.8
CSS0045513 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D008628 3.5e-221 771.9 538 75.8
CSS0027057 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D008628 1.9e-179 633.3 511 69.3
CSS0028660 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D000589 4.8e-45 186.8 423 31.7
CSS0015130 Camellia sinensis var. sinensis HOM05D000254 ORTHO05D000165 2.6e-43 181.0 248 42.7
CSS0000183 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D000352 1.4e-39 168.7 386 35.2
CSS0020048 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D000352 3.0e-39 167.5 386 34.7
CSS0022071 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D012208 3.0e-39 167.5 274 35.8
CSS0017336 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D000352 2.0e-38 164.9 287 35.9
CSS0011427 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D000589 1.1e-36 159.1 287 35.2
CSS0007065 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D008628 1.6e-35 155.2 112 67.0
CSS0013817 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D008628 7.7e-35 152.9 132 59.8
CSS0025772 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D008628 5.0e-34 150.2 111 64.9
CSS0006552 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D008628 3.2e-33 147.5 114 64.0
CSS0003582 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D008628 9.4e-33 146.0 122 59.0
CSS0018264 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D008628 1.1e-28 132.5 158 44.9
CSS0021922 Camellia sinensis var. sinensis HOM05D011245 ORTHO05D008628 1.7e-21 108.6 184 37.5
CSS0039727 Camellia sinensis var. sinensis HOM05D014103 ORTHO05D000352 5.4e-20 103.6 63 73.0
CSS0040181 Camellia sinensis var. sinensis HOM05D014103 ORTHO05D000352 2.7e-19 101.3 63 68.3
CSS0010631 Camellia sinensis var. sinensis HOM05D014103 ORTHO05D000352 5.9e-19 100.1 91 58.2
CSS0017844 Camellia sinensis var. sinensis HOM05D014103 ORTHO05D000352 6.6e-18 96.7 93 51.6
CSS0023440 Camellia sinensis var. sinensis HOM05D014103 ORTHO05D000352 8.6e-18 96.3 63 69.8
Actinidia20119 Actinidia chinensis HOM05D010691 ORTHO05D008628 2.5e-17 94.7 96 50.0
CSS0005344 Camellia sinensis var. sinensis HOM05D014103 ORTHO05D000352 5.6e-17 93.6 63 63.5
vmacro07682 Vaccinium macrocarpon HOM05D000026 ORTHO05D000127 1.0e-15 89.4 115 43.5
CSS0039158 Camellia sinensis var. sinensis HOM05D014103 ORTHO05D000352 6.8e-15 86.7 63 63.5
CSS0036497 Camellia sinensis var. sinensis HOM05D014103 ORTHO05D000352 9.8e-14 82.8 51 76.5
AUR62036961 Chenopodium quinoa HOM05D009273 ORTHO05D000589 2.2e-13 81.6 374 24.9
Sopen01g013970 Solanum pennellii HOM05D000047 ORTHO05D000589 1.4e-12 79.0 336 25.0
PGR031G0507 Punica granatum HOM05D000047 ORTHO05D000589 4.1e-12 77.4 334 26.9
PGR004G2751 Punica granatum HOM05D000047 ORTHO05D000589 9.2e-12 76.3 342 26.9
CSS0030729 Camellia sinensis var. sinensis HOM05D014103 ORTHO05D000352 2.0e-11 75.1 51 68.6
CSS0046816 Camellia sinensis var. sinensis HOM05D014103 ORTHO05D000352 6.0e-11 73.6 56 60.7
Sopen00g007140 Solanum pennellii HOM05D000047 ORTHO05D000044 6.0e-11 73.6 325 25.8
Sopen04g026920 Solanum pennellii HOM05D000047 ORTHO05D000044 6.0e-11 73.6 325 25.8
Sopen08g011490 Solanum pennellii HOM05D000047 ORTHO05D000044 7.8e-11 73.2 365 23.0
CSS0046152 Camellia sinensis var. sinensis HOM05D015870 ORTHO05D008628 1.0e-10 72.8 61 60.7
Sopen00g005610 Solanum pennellii HOM05D000047 ORTHO05D000044 1.0e-10 72.8 326 25.5
CSS0024495 Camellia sinensis var. sinensis HOM05D000132 ORTHO05D000058 1.3e-10 72.4 46 67.4
Sopen11g013060 Solanum pennellii HOM05D000047 ORTHO05D000589 1.7e-10 72.0 314 25.5
CSS0041198 Camellia sinensis var. sinensis HOM05D014704 ORTHO05D008628 2.3e-10 71.6 53 58.5
Sopen04g012740 Solanum pennellii HOM05D000047 ORTHO05D000044 3.0e-10 71.2 332 25.0
Sopen01g018900 Solanum pennellii HOM05D000047 ORTHO05D000044 3.9e-10 70.9 324 24.7
PGR031G1972 Punica granatum HOM05D000047 ORTHO05D000589 5.0e-10 70.5 342 26.6
Sopen05g027550 Solanum pennellii HOM05D000047 ORTHO05D000044 5.0e-10 70.5 330 25.5
PGR044G1493 Punica granatum HOM05D000047 ORTHO05D000589 6.6e-10 70.1 342 26.9
Sopen01g009320 Solanum pennellii HOM05D000047 ORTHO05D000589 6.6e-10 70.1 55 63.6
Sopen10g014420 Solanum pennellii HOM05D000047 ORTHO05D000044 1.1e-09 69.3 349 27.2
Sopen05g013770 Solanum pennellii HOM05D000047 ORTHO05D000589 1.5e-09 68.9 325 25.8
Sopen11g018810 Solanum pennellii HOM05D000047 ORTHO05D000044 1.5e-09 68.9 325 24.3
PGSC0003DMG400033678 Solanum tuberosum HOM05D000047 ORTHO05D000589 1.5e-09 68.9 55 61.8
Actinidia34913 Actinidia chinensis HOM05D000047 ORTHO05D000589 1.9e-09 68.6 84 44.0
Sopen12g018760 Solanum pennellii HOM05D000047 ORTHO05D000044 1.9e-09 68.6 327 25.1
CSS0039449 Camellia sinensis var. sinensis HOM05D014103 ORTHO05D000352 2.5e-09 68.2 51 64.7
Sopen03g017560 Solanum pennellii HOM05D000047 ORTHO05D000044 2.5e-09 68.2 325 24.9
Sopen06g011500 Solanum pennellii HOM05D000047 ORTHO05D000044 2.5e-09 68.2 326 24.8
AUR62026412 Chenopodium quinoa HOM05D009273 ORTHO05D011122 3.3e-09 67.8 344 25.6
Sopen11g023390 Solanum pennellii HOM05D000047 ORTHO05D000044 4.3e-09 67.4 325 25.2
Sopen05g010730 Solanum pennellii HOM05D000047 ORTHO05D000044 5.6e-09 67.0 325 24.9
Sopen05g022380 Solanum pennellii HOM05D000047 ORTHO05D000044 5.6e-09 67.0 327 25.4
Sopen02g008640 Solanum pennellii HOM05D000047 ORTHO05D000589 9.5e-09 66.2 399 23.1
Sopen03g025010 Solanum pennellii HOM05D000047 ORTHO05D000044 9.5e-09 66.2 326 24.2
Sopen04g012100 Solanum pennellii HOM05D000047 ORTHO05D000044 9.5e-09 66.2 342 24.6
Sopen05g022540 Solanum pennellii HOM05D000047 ORTHO05D000589 9.5e-09 66.2 331 23.3
Dinv05537 Davidia involucrata HOM05D041055 ORTHO05D008628 1.2e-08 65.9 93 41.9
Sopen04g022390 Solanum pennellii HOM05D000047 ORTHO05D000044 1.2e-08 65.9 327 24.5
Sopen05g022280 Solanum pennellii HOM05D000047 ORTHO05D000044 1.2e-08 65.9 353 22.9
Sopen06g012960 Solanum pennellii HOM05D000047 ORTHO05D000589 1.2e-08 65.9 372 24.2
Sopen10g014790 Solanum pennellii HOM05D000047 ORTHO05D000044 1.2e-08 65.9 326 25.2
Sopen11g015560 Solanum pennellii HOM05D000047 ORTHO05D000589 1.2e-08 65.9 328 25.0
Sopen03g027390 Solanum pennellii HOM05D000047 ORTHO05D000589 1.6e-08 65.5 330 24.2
Sopen05g012300 Solanum pennellii HOM05D000047 ORTHO05D000044 1.6e-08 65.5 330 24.8
Sopen08g023600 Solanum pennellii HOM05D000047 ORTHO05D000044 1.6e-08 65.5 327 24.8
Sopen11g022340 Solanum pennellii HOM05D000047 ORTHO05D000589 1.6e-08 65.5 325 25.2
CSS0013843 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.1e-08 65.1 35 77.1
Sopen05g010710 Solanum pennellii HOM05D000047 ORTHO05D000044 2.1e-08 65.1 321 24.9
AUR62025784 Chenopodium quinoa HOM05D010410 ORTHO05D011122 2.8e-08 64.7 93 35.5
AUR62037095 Chenopodium quinoa HOM05D009273 ORTHO05D011122 2.8e-08 64.7 93 34.4
AUR62042972 Chenopodium quinoa HOM05D009273 ORTHO05D011122 2.8e-08 64.7 251 27.1
MBI17_g23155_MAGBIO Magnolia biondii HOM05D001531 ORTHO05D004604 2.8e-08 64.7 398 23.6
Sopen10g014590 Solanum pennellii HOM05D000047 ORTHO05D000589 3.6e-08 64.3 55 58.2
Sopen05g026280 Solanum pennellii HOM05D000047 ORTHO05D000044 4.7e-08 63.9 330 26.1
TPR.G22842 Trifolium pratense HOM05D000047 ORTHO05D000044 4.7e-08 63.9 368 23.1
PGR119G1948 Punica granatum HOM05D000047 ORTHO05D000589 6.2e-08 63.5 321 26.5
Sopen01g025530 Solanum pennellii HOM05D000047 ORTHO05D000589 6.2e-08 63.5 364 23.9
Sopen11g013160 Solanum pennellii HOM05D000047 ORTHO05D000044 6.2e-08 63.5 110 31.8
AUR62038327 Chenopodium quinoa HOM05D009273 ORTHO05D011122 8.0e-08 63.2 344 25.3
AUR62042427 Chenopodium quinoa HOM05D009273 ORTHO05D011122 8.0e-08 63.2 126 32.5
PGR004G0317 Punica granatum HOM05D000047 ORTHO05D007790 8.0e-08 63.2 321 26.5
Sopen01g016590 Solanum pennellii HOM05D000047 ORTHO05D000589 8.0e-08 63.2 382 24.6
Sopen06g010190 Solanum pennellii HOM05D000047 ORTHO05D000044 8.0e-08 63.2 325 24.9
Sopen07g005350 Solanum pennellii HOM05D000047 ORTHO05D000589 8.0e-08 63.2 381 24.1
TPR.G18586 Trifolium pratense HOM05D002881 ORTHO05D000589 8.0e-08 63.2 344 23.5
Sopen00g013170 Solanum pennellii HOM05D000047 ORTHO05D000589 1.1e-07 62.8 55 56.4
Sopen07g019490 Solanum pennellii HOM05D000047 ORTHO05D000044 1.1e-07 62.8 331 24.2
SGA_v2.0_scaffold601G53143 Striga asiatica HOM05D010691 ORTHO05D008628 1.1e-07 62.8 48 60.4
AUR62036760 Chenopodium quinoa HOM05D000030 ORTHO05D011122 2.3e-07 61.6 126 31.7
AUR62041897 Chenopodium quinoa HOM05D009273 ORTHO05D011122 2.3e-07 61.6 380 23.9
Sopen02g019110 Solanum pennellii HOM05D000047 ORTHO05D000589 2.3e-07 61.6 54 55.6
Sopen08g016310 Solanum pennellii HOM05D000047 ORTHO05D000044 2.3e-07 61.6 321 23.1
Dinv04833 Davidia involucrata HOM05D013497 ORTHO05D008628 3.1e-07 61.2 87 41.4
Sopen01g019870 Solanum pennellii HOM05D000047 ORTHO05D000589 3.1e-07 61.2 76 35.5
CSS0008493 Camellia sinensis var. sinensis HOM05D014704 ORTHO05D008628 4.0e-07 60.8 43 60.5
CSS0008735 Camellia sinensis var. sinensis HOM05D014704 ORTHO05D008628 4.0e-07 60.8 43 60.5
Dinv23015 Davidia involucrata HOM05D012821 ORTHO05D008628 4.0e-07 60.8 93 40.9
Sopen06g009420 Solanum pennellii HOM05D000047 ORTHO05D000589 4.0e-07 60.8 328 24.4
Sopen09g017540 Solanum pennellii HOM05D000047 ORTHO05D000589 4.0e-07 60.8 55 58.2
Sopen09g029500 Solanum pennellii HOM05D000047 ORTHO05D000589 4.0e-07 60.8 53 56.6
Sopen10g024660 Solanum pennellii HOM05D000047 ORTHO05D000044 4.0e-07 60.8 67 50.7
PGR142G3646 Punica granatum HOM05D000047 ORTHO05D000589 5.2e-07 60.5 335 23.6
Sopen03g025970 Solanum pennellii HOM05D000047 ORTHO05D000044 5.2e-07 60.5 124 33.1
Sopen05g014250 Solanum pennellii HOM05D000047 ORTHO05D000044 5.2e-07 60.5 76 36.8
Sopen11g013110 Solanum pennellii HOM05D000047 ORTHO05D000589 5.2e-07 60.5 76 36.8
Sopen11g023720 Solanum pennellii HOM05D000047 ORTHO05D000044 5.2e-07 60.5 77 45.5
Sopen12g011360 Solanum pennellii HOM05D000047 ORTHO05D000044 5.2e-07 60.5 53 54.7
Sopen05g011250 Solanum pennellii HOM05D000047 ORTHO05D000044 6.8e-07 60.1 329 23.4
Sopen12g009930 Solanum pennellii HOM05D000047 ORTHO05D000589 6.8e-07 60.1 55 54.5
PGSC0003DMG400041004 Solanum tuberosum HOM05D000047 ORTHO05D000589 6.8e-07 60.1 76 36.8
PGR083G2337 Punica granatum HOM05D000047 ORTHO05D007790 8.9e-07 59.7 335 24.5
PGR142G0258 Punica granatum HOM05D000047 ORTHO05D000589 8.9e-07 59.7 345 28.1
Sopen00g004220 Solanum pennellii HOM05D000047 ORTHO05D000044 8.9e-07 59.7 69 47.8
Sopen01g017440 Solanum pennellii HOM05D000047 ORTHO05D000044 8.9e-07 59.7 76 36.8
Sopen07g007700 Solanum pennellii HOM05D000047 ORTHO05D000044 8.9e-07 59.7 67 49.3
Sopen09g008810 Solanum pennellii HOM05D000047 ORTHO05D000044 8.9e-07 59.7 53 54.7
CSS0044758 Camellia sinensis var. sinensis HOM05D011245 ORTHO05D008628 1.2e-06 59.3 35 77.1
Ca_07368_v3 Cicer arietinum L. HOM05D000047 ORTHO05D000044 1.2e-06 59.3 76 34.2
Nitab4.5_0002656g0090 Nicotiana tabacum HOM05D000047 ORTHO05D000589 1.2e-06 59.3 81 44.4
PGR004G2002 Punica granatum HOM05D000047 ORTHO05D000589 1.2e-06 59.3 346 24.0
Sopen01g016360 Solanum pennellii HOM05D000047 ORTHO05D000044 1.2e-06 59.3 53 54.7
Sopen09g009160 Solanum pennellii HOM05D000047 ORTHO05D000044 1.2e-06 59.3 67 49.3
Sopen09g010970 Solanum pennellii HOM05D000014 ORTHO05D000093 1.2e-06 59.3 69 47.8
Sopen02g012050 Solanum pennellii HOM05D000047 ORTHO05D000589 1.5e-06 58.9 323 25.1
Sopen03g009310 Solanum pennellii HOM05D000047 ORTHO05D000044 1.5e-06 58.9 336 24.1
Sopen06g007770 Solanum pennellii HOM05D000047 ORTHO05D000044 1.5e-06 58.9 53 54.7
Sopen07g014290 Solanum pennellii HOM05D000047 ORTHO05D000589 1.5e-06 58.9 55 50.9
Sopen11g013030 Solanum pennellii HOM05D000047 ORTHO05D000044 1.5e-06 58.9 67 49.3
Ca_03536_v3 Cicer arietinum L. HOM05D000047 ORTHO05D000589 2.0e-06 58.5 76 32.9
Dinv10876 Davidia involucrata HOM05D000047 ORTHO05D008628 2.0e-06 58.5 85 41.2
PGR031G0302 Punica granatum HOM05D000047 ORTHO05D000589 2.0e-06 58.5 334 23.7
PGR142G0734 Punica granatum HOM05D000047 ORTHO05D000589 2.0e-06 58.5 323 25.4
Sopen00g003940 Solanum pennellii HOM05D000047 ORTHO05D000044 2.0e-06 58.5 51 54.9
Sopen01g017890 Solanum pennellii HOM05D000047 ORTHO05D000589 2.0e-06 58.5 359 21.4
Sopen07g022200 Solanum pennellii HOM05D000047 ORTHO05D000044 2.0e-06 58.5 122 30.3
Sopen10g020130 Solanum pennellii HOM05D000047 ORTHO05D000589 2.0e-06 58.5 79 38.0
Sopen11g014160 Solanum pennellii HOM05D000047 ORTHO05D000589 2.0e-06 58.5 75 36.0
Sopen02g001130 Solanum pennellii HOM05D000047 ORTHO05D000044 2.6e-06 58.2 69 46.4
Sopen04g012230 Solanum pennellii HOM05D000047 ORTHO05D000589 2.6e-06 58.2 182 26.4
Sopen05g018910 Solanum pennellii HOM05D000047 ORTHO05D000044 2.6e-06 58.2 76 32.9
Sopen08g012580 Solanum pennellii HOM05D000047 ORTHO05D000589 2.6e-06 58.2 76 35.5
Sopen09g026320 Solanum pennellii HOM05D000047 ORTHO05D000044 2.6e-06 58.2 315 24.1
CSS0049846 Camellia sinensis var. sinensis HOM05D011245 ORTHO05D008628 3.4e-06 57.8 35 74.3
Ca_13847_v3 Cicer arietinum L. HOM05D000047 ORTHO05D000589 3.4e-06 57.8 76 32.9
MBI18_g24630_MAGBIO Magnolia biondii HOM05D001531 ORTHO05D008628 3.4e-06 57.8 132 31.8
Sopen01g027800 Solanum pennellii HOM05D000047 ORTHO05D000044 3.4e-06 57.8 55 52.7
Sopen02g006620 Solanum pennellii HOM05D000047 ORTHO05D000589 3.4e-06 57.8 76 32.9
Sopen03g009040 Solanum pennellii HOM05D000047 ORTHO05D000589 3.4e-06 57.8 53 52.8
Dinv04982 Davidia involucrata HOM05D012821 ORTHO05D001422 4.4e-06 57.4 91 40.7
Sopen02g007890 Solanum pennellii HOM05D000047 ORTHO05D000589 4.4e-06 57.4 314 25.2
Sopen03g007470 Solanum pennellii HOM05D000047 ORTHO05D000044 4.4e-06 57.4 69 46.4
Sopen12g017930 Solanum pennellii HOM05D000047 ORTHO05D000044 4.4e-06 57.4 324 21.9
CSS0014448 Camellia sinensis var. sinensis HOM05D011245 ORTHO05D008628 5.8e-06 57.0 37 62.2
MBI11_g15179_MAGBIO Magnolia biondii HOM05D001531 ORTHO05D008628 5.8e-06 57.0 185 29.2
Sopen01g020830 Solanum pennellii HOM05D000047 ORTHO05D000589 5.8e-06 57.0 85 43.5
Sopen06g013990 Solanum pennellii HOM05D000047 ORTHO05D000589 5.8e-06 57.0 76 31.6
Sopen10g027690 Solanum pennellii HOM05D000047 ORTHO05D000044 5.8e-06 57.0 376 23.9
MBI14_g46090_MAGBIO Magnolia biondii HOM05D001531 ORTHO05D008628 7.5e-06 56.6 72 44.4
Sopen03g015560 Solanum pennellii HOM05D000047 ORTHO05D000044 7.5e-06 56.6 53 52.8
Sopen08g013380 Solanum pennellii HOM05D000047 ORTHO05D000589 7.5e-06 56.6 53 54.7
Sopen09g022070 Solanum pennellii HOM05D000047 ORTHO05D001422 7.5e-06 56.6 76 35.5
Sopen12g009400 Solanum pennellii HOM05D000047 ORTHO05D000589 7.5e-06 56.6 51 56.9
Sopen12g018290 Solanum pennellii HOM05D000047 ORTHO05D000589 7.5e-06 56.6 75 34.7
CSS0028595 Camellia sinensis var. sinensis HOM05D011245 ORTHO05D008628 9.8e-06 56.2 118 35.6
Dinv11091 Davidia involucrata HOM05D013497 ORTHO05D008628 9.8e-06 56.2 93 40.9
MBI13_g38682_MAGBIO Magnolia biondii HOM05D001531 ORTHO05D008628 9.8e-06 56.2 78 43.6
Sopen03g009570 Solanum pennellii HOM05D000047 ORTHO05D000589 9.8e-06 56.2 357 21.3
Sopen04g014710 Solanum pennellii HOM05D000047 ORTHO05D000044 9.8e-06 56.2 69 46.4
Sopen07g015770 Solanum pennellii HOM05D000047 ORTHO05D000044 9.8e-06 56.2 55 52.7
Sopen07g018610 Solanum pennellii HOM05D000047 ORTHO05D000044 9.8e-06 56.2 69 46.4
Sopen09g013810 Solanum pennellii HOM05D000047 ORTHO05D000589 9.8e-06 56.2 53 54.7


User provided reference genes

Program Settings