Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.2e-245 852.8 462 100.0
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 5.7e-211 737.6 434 94.2
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 7.3e-166 587.8 360 79.7
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 2.0e-163 579.7 377 74.0
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.5e-155 553.5 368 74.5
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 7.5e-147 524.6 358 70.7
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 2.9e-146 522.7 423 63.1
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 1.5e-142 510.4 364 67.9
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 9.5e-142 507.7 354 69.2
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 1.1e-140 504.2 340 67.1
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 6.8e-140 501.5 358 67.9
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 2.0e-139 500.0 358 65.9
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 5.8e-139 498.4 381 63.3
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 1.7e-138 496.9 431 57.5
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.2e-138 496.5 368 65.5
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 6.4e-138 495.0 340 65.6
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 8.4e-138 494.6 340 66.2
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 8.4e-138 494.6 450 57.3
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 1.9e-137 493.4 340 65.9
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 1.9e-137 493.4 365 66.3
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 3.2e-137 492.7 308 73.7
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 3.2e-137 492.7 400 62.2
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 5.4e-137 491.9 362 67.1
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.2e-136 490.7 400 61.5
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 2.7e-136 489.6 366 68.3
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 5.1e-135 485.3 369 66.7
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 8.6e-135 484.6 370 61.4
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 1.9e-134 483.4 369 61.5
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 5.6e-134 481.9 408 58.6
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 5.6e-134 481.9 371 63.9
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 5.6e-134 481.9 374 64.4
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 7.3e-134 481.5 381 61.7
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 9.6e-134 481.1 432 54.9
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 2.1e-133 479.9 357 66.1
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 3.6e-133 479.2 375 62.9
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 8.1e-133 478.0 384 62.0
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 1.4e-132 477.2 384 61.2
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 1.4e-132 477.2 357 66.4
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 6.9e-132 474.9 348 63.2
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 6.9e-132 474.9 339 65.8
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 1.5e-131 473.8 445 57.1
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 5.8e-131 471.9 340 63.8
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 1.3e-130 470.7 393 60.8
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 1.3e-130 470.7 390 58.7
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 4.9e-130 468.8 392 60.7
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 8.4e-130 468.0 381 60.9
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 1.4e-129 467.2 382 58.1
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 2.4e-129 466.5 391 59.6
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 3.2e-129 466.1 384 59.4
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 4.2e-129 465.7 311 66.6
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 7.1e-129 464.9 374 58.8
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 6.0e-128 461.8 385 58.4
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 6.0e-128 461.8 394 57.9
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.0e-127 461.1 369 62.3
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 1.0e-127 461.1 347 60.8
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 1.7e-127 460.3 370 60.3
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 3.9e-127 459.1 391 57.3
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 5.1e-127 458.8 376 58.5
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 8.7e-127 458.0 369 60.4
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 1.9e-126 456.8 436 54.6
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 2.5e-126 456.4 364 60.2
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 3.3e-126 456.1 343 64.1
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 7.3e-126 454.9 309 68.9
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 2.1e-125 453.4 361 59.8
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 2.8e-125 453.0 328 64.0
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 1.4e-124 450.7 354 62.1
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 1.4e-124 450.7 343 62.4
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 5.3e-124 448.7 339 62.5
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 6.9e-124 448.4 351 61.8
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 1.5e-123 447.2 308 67.5
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 7.6e-123 444.9 388 59.8
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 2.2e-122 443.4 333 64.3
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 2.2e-122 443.4 388 56.2
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 6.4e-122 441.8 339 61.9
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 8.4e-122 441.4 342 62.9
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 1.4e-121 440.7 380 58.4
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.9e-121 440.3 367 60.5
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 5.4e-121 438.7 379 58.6
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 7.1e-121 438.3 248 83.1
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 7.1e-121 438.3 379 58.6
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 9.3e-121 438.0 373 56.3
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 1.2e-120 437.6 373 56.3
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 1.2e-120 437.6 362 58.6
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 1.6e-120 437.2 355 60.8
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 6.0e-120 435.3 336 63.4
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 7.9e-120 434.9 361 59.6
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 5.6e-118 428.7 374 55.9
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 9.6e-118 427.9 382 55.8
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 1.6e-117 427.2 377 57.3
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 2.1e-117 426.8 373 56.3
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 1.1e-116 424.5 393 57.3
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 5.3e-116 422.2 339 61.1
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 1.2e-115 421.0 374 58.6
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 4.5e-115 419.1 343 58.6
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 1.3e-114 417.5 340 60.0
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 4.9e-114 415.6 370 52.7
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.9e-113 413.7 366 53.8
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 2.4e-113 413.3 381 54.1
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 4.2e-113 412.5 356 57.3
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 5.5e-113 412.1 343 57.7
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 5.5e-113 412.1 306 63.1
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 7.1e-113 411.8 441 51.0
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 1.6e-112 410.6 381 53.8
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 2.1e-112 410.2 374 55.9
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 3.5e-112 409.5 350 61.1
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 6.0e-112 408.7 309 60.5
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 1.3e-111 407.5 377 56.5
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 3.0e-111 406.4 442 49.3
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 4.3e-110 402.5 394 54.1
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 2.1e-109 400.2 376 55.1
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 1.4e-108 397.5 370 54.1
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 6.9e-108 395.2 377 52.3
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 1.3e-106 391.0 379 53.0
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 2.2e-106 390.2 385 51.4
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 3.8e-106 389.4 340 54.7
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 8.4e-106 388.3 269 65.4
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 1.9e-105 387.1 376 52.7
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 5.5e-105 385.6 380 53.4
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 6.0e-104 382.1 401 49.6
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 2.3e-103 380.2 335 57.3
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 2.5e-102 376.7 408 48.3
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 4.3e-102 375.9 366 53.6
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 5.7e-102 375.6 362 54.4
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 2.8e-101 373.2 366 53.3
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.8e-100 370.5 339 54.6
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 4.1e-100 369.4 366 52.7
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 3.4e-99 366.3 310 56.1
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 1.2e-96 357.8 298 59.1
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 4.6e-96 355.9 381 48.3
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 6.1e-96 355.5 385 47.5
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 6.7e-95 352.1 380 47.6
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 2.2e-93 347.1 378 47.6
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 1.1e-92 344.7 393 47.6
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.4e-92 344.4 337 53.7
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 1.5e-91 340.9 434 45.2
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 4.5e-91 339.3 391 47.1
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 1.1e-89 334.7 367 49.3
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.1e-89 334.7 268 60.4
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 4.8e-85 319.3 324 47.8
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 7.2e-81 305.4 233 65.2
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 7.2e-81 305.4 331 45.6
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 1.2e-80 304.7 328 45.1
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 3.6e-72 276.6 268 53.0
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 1.2e-70 271.6 362 39.8
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 1.2e-70 271.6 319 44.2
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 5.3e-68 262.7 339 41.3
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.7e-67 260.4 339 41.6
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.3e-66 258.1 339 41.3
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 1.9e-65 254.2 290 45.2
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 1.6e-59 234.6 322 41.3
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 3.8e-58 229.9 269 42.0
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.5e-57 228.0 311 37.3
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 5.5e-57 226.1 271 39.1
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 6.1e-56 222.6 377 32.9
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.8e-55 221.1 210 48.6
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 5.2e-55 219.5 298 37.6
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 4.4e-54 216.5 255 48.2
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 3.7e-53 213.4 191 50.8
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 4.9e-53 213.0 300 35.0
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 4.9e-53 213.0 300 35.0
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 3.6e-48 196.8 137 67.9
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 1.7e-42 177.9 154 56.5
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.1e-41 175.3 174 51.1
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 5.2e-39 166.4 118 67.8
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 4.9e-37 159.8 111 68.5
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.0e-35 154.5 164 47.0
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 4.6e-35 153.3 161 50.9
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 9.2e-28 129.0 139 48.2
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 6.6e-26 122.9 228 30.7
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 9.5e-25 119.0 89 56.2
MCO14G045 Micromonas commoda HOM05D000861 ORTHO05D004749 7.1e-20 102.8 279 28.0
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 7.1e-20 102.8 89 53.9
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 8.7e-18 95.9 90 52.2
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.9e-17 94.7 256 32.4
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 5.8e-14 83.2 60 58.3
Actinidia30544 Actinidia chinensis HOM05D000861 ORTHO05D038136 2.1e-11 74.7 85 56.5
CBR_g4192 Chara braunii HOM05D000019 ORTHO05D022303 2.4e-07 61.2 96 29.2
Hma1.2p1_0636F.1_g193250 Hydrangea macrophylla HOM05D000861 ORTHO05D038136 5.3e-07 60.1 49 69.4


User provided reference genes

Program Settings