Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 7.6e-86 320.5 163 100.0
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.5e-83 311.6 163 98.2
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.9e-58 228.4 231 60.6
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.3e-55 218.0 231 57.1
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.9e-54 214.5 218 58.3
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 4.1e-47 191.8 228 49.6
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 7.7e-46 187.6 228 49.6
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-45 186.8 205 56.1
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.7e-45 186.4 228 51.8
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.5e-41 173.3 231 46.8
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 1.5e-41 173.3 228 47.8
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.5e-41 173.3 231 47.6
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.0e-41 172.9 231 47.2
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 2.6e-41 172.6 231 45.0
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 4.4e-41 171.8 231 46.8
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.3e-40 170.2 230 46.1
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 6.3e-40 167.9 231 46.3
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 6.3e-40 167.9 231 46.3
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 6.3e-40 167.9 231 46.8
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 1.1e-39 167.2 231 45.9
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.8e-39 166.4 224 44.6
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 4.1e-39 165.2 231 45.5
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 4.1e-39 165.2 229 46.7
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 4.1e-39 165.2 226 44.2
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 5.3e-39 164.9 231 46.8
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 7.0e-39 164.5 231 43.7
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-38 163.7 193 53.4
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 1.2e-38 163.7 231 45.5
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.2e-38 163.7 223 45.3
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 5.9e-38 161.4 230 45.2
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 1.0e-37 160.6 227 44.5
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 3.8e-37 158.7 225 45.3
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 6.5e-37 157.9 227 44.1
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 6.5e-37 157.9 224 46.0
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 8.5e-37 157.5 217 44.7
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 1.1e-36 157.1 231 41.1
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 2.5e-36 156.0 227 44.1
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 4.2e-36 155.2 227 42.7
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 4.2e-36 155.2 224 45.5
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 7.2e-36 154.5 222 42.8
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 3.6e-35 152.1 224 41.5
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 4.7e-35 151.8 224 43.3
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 6.1e-35 151.4 227 42.7
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 1.0e-34 150.6 227 42.7
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 1.4e-34 150.2 228 42.1
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.8e-34 149.8 229 42.4
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 6.8e-34 147.9 232 44.0
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 8.8e-34 147.5 227 42.3
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.2e-33 147.1 232 42.7
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 1.2e-33 147.1 225 43.6
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.5e-33 146.7 226 42.0
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 2.6e-33 146.0 229 41.0
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.6e-33 146.0 229 41.5
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 3.4e-33 145.6 227 41.0
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 7.5e-33 144.4 227 41.9
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 7.5e-33 144.4 231 44.2
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 1.3e-32 143.7 228 43.0
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.7e-32 143.3 228 43.4
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.2e-32 142.9 228 42.5
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 2.8e-32 142.5 228 43.0
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 4.8e-32 141.7 228 41.2
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.8e-32 141.7 228 43.0
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.8e-32 141.7 228 43.0
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 6.3e-32 141.4 225 42.2
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 3.1e-31 139.0 230 39.1
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 4.1e-31 138.7 231 43.3
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 4.1e-31 138.7 228 39.0
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 9.1e-31 137.5 227 39.6
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 9.1e-31 137.5 226 38.9
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 1.2e-30 137.1 222 39.2
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 1.2e-30 137.1 228 39.0
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 3.5e-30 135.6 228 40.4
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 4.5e-30 135.2 88 76.1
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 1.0e-29 134.0 231 42.4
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 2.9e-29 132.5 222 38.7
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.8e-29 132.1 88 75.0
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 5.0e-29 131.7 227 37.4
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 6.6e-29 131.3 228 38.2
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.1e-28 130.6 88 73.9
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.3e-28 129.0 88 72.7
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 7.2e-28 127.9 175 48.0
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.2e-27 127.1 223 37.2
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.2e-27 127.1 223 36.8
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.2e-27 127.1 226 35.4
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 2.8e-27 125.9 226 36.7
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 3.6e-27 125.6 225 35.6
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 3.6e-27 125.6 226 36.7
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 4.7e-27 125.2 226 36.3
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 4.7e-27 125.2 221 36.2
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 4.7e-27 125.2 225 35.1
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 8.0e-27 124.4 219 36.1
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 1.0e-26 124.0 226 36.3
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.0e-26 124.0 229 39.3
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 2.3e-26 122.9 223 35.9
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 4.0e-26 122.1 223 35.9
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 2.6e-25 119.4 219 36.1
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 3.4e-25 119.0 227 36.6
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 5.7e-25 118.2 220 37.7
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 1.0e-21 107.5 83 63.9
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 2.5e-20 102.8 88 59.1
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 3.3e-20 102.4 82 62.2
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 1.2e-19 100.5 82 62.2
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 2.8e-19 99.4 84 61.9
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 1.4e-18 97.1 74 59.5
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 2.3e-18 96.3 82 62.2
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 5.2e-18 95.1 84 60.7
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.7e-16 89.0 85 51.8
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.4e-16 88.2 82 53.7
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 8.3e-16 87.8 82 56.1
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 1.1e-15 87.4 82 52.4
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.4e-15 86.3 88 56.8
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 7.0e-15 84.7 82 52.4
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 2.7e-14 82.8 82 50.0
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 3.5e-14 82.4 82 51.2
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.5e-14 82.4 82 52.4
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 3.5e-14 82.4 82 48.8
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 4.6e-14 82.0 93 40.9
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.0e-14 81.6 82 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 7.8e-14 81.3 92 42.4
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 7.8e-14 81.3 225 30.2
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 1.0e-13 80.9 83 48.2
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.0e-13 80.9 82 46.3
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 1.0e-13 80.9 83 51.8
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.7e-13 80.1 83 54.2
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 2.3e-13 79.7 81 48.1
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 3.0e-13 79.3 83 48.2
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.1e-12 77.4 89 43.8
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-12 77.4 83 51.8
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.5e-12 77.0 83 47.0
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 1.9e-12 76.6 99 44.4
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 2.5e-12 76.3 94 44.7
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.3e-12 75.9 89 43.8
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 7.3e-12 74.7 89 43.8
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.2e-11 73.9 82 43.9
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 1.6e-11 73.6 83 50.6
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 8.0e-11 71.2 63 54.0
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.8e-10 70.1 95 41.1
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 3.4e-09 65.9 86 36.0
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 2.2e-08 63.2 95 37.9
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 7.1e-07 58.2 92 38.0
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 7.1e-07 58.2 85 37.6
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 1.6e-06 57.0 88 36.4
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 1.6e-06 57.0 66 47.0
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 2.7e-06 56.2 76 50.0
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 2.7e-06 56.2 88 34.1
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 3.5e-06 55.8 91 36.3
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 6.0e-06 55.1 53 54.7


User provided reference genes

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