Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 7.3e-131 471.1 341 100.0
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 1.2e-51 208.0 197 61.4
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 2.0e-51 207.2 190 62.1
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 3.7e-50 203.0 188 62.8
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 4.2e-46 189.5 188 55.3
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 5.2e-44 182.6 215 50.2
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 2.0e-43 180.6 151 66.2
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 5.7e-43 179.1 203 49.3
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 2.2e-42 177.2 198 53.0
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 3.7e-42 176.4 195 51.3
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 1.1e-41 174.9 198 52.0
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 1.1e-41 174.9 185 50.3
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 1.1e-41 174.9 182 53.3
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 7.0e-41 172.2 185 50.3
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 7.0e-41 172.2 181 57.5
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 4.5e-40 169.5 189 51.3
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 5.9e-40 169.1 185 51.9
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 1.3e-39 167.9 202 48.5
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 1.7e-39 167.5 189 49.7
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 2.3e-39 167.2 177 53.1
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 6.6e-39 165.6 186 50.0
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 8.6e-39 165.2 198 48.0
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 1.5e-38 164.5 179 53.6
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 1.5e-38 164.5 161 55.3
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 3.3e-38 163.3 182 52.7
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 7.3e-38 162.2 186 48.4
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 9.5e-38 161.8 178 48.9
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 2.1e-37 160.6 168 51.8
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 6.1e-37 159.1 183 50.8
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 2.3e-36 157.1 183 50.3
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 3.0e-36 156.8 180 51.1
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 5.2e-36 156.0 179 46.4
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 6.8e-36 155.6 189 49.7
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 8.9e-36 155.2 177 50.3
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 1.5e-35 154.5 190 48.9
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 2.6e-35 153.7 169 49.7
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 4.4e-35 152.9 178 49.4
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 4.4e-35 152.9 176 51.7
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 5.7e-35 152.5 176 51.7
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 5.7e-35 152.5 176 51.7
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 5.7e-35 152.5 176 51.7
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 7.5e-35 152.1 172 55.2
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 9.8e-35 151.8 176 48.9
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 9.8e-35 151.8 180 48.9
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 1.3e-34 151.4 174 52.3
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 2.9e-34 150.2 180 51.1
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 3.7e-34 149.8 181 50.8
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 4.9e-34 149.4 172 48.3
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 8.3e-34 148.7 186 46.8
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 1.1e-33 148.3 178 47.8
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 1.1e-33 148.3 180 50.0
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 1.1e-33 148.3 169 51.5
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 2.4e-33 147.1 176 50.0
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 4.1e-33 146.4 186 46.2
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 5.4e-33 146.0 193 44.0
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 7.0e-33 145.6 176 48.3
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 7.0e-33 145.6 187 48.7
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 7.0e-33 145.6 177 52.0
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 7.0e-33 145.6 177 52.0
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 9.2e-33 145.2 176 48.3
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 1.2e-32 144.8 185 47.6
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 1.6e-32 144.4 193 49.7
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 1.6e-32 144.4 167 50.9
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 1.0e-31 141.7 193 43.5
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 3.0e-31 140.2 185 46.5
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 3.0e-31 140.2 176 46.0
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 8.6e-31 138.7 196 45.9
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 1.5e-30 137.9 176 46.0
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 1.9e-30 137.5 184 48.4
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 2.5e-30 137.1 186 44.6
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 2.5e-30 137.1 186 45.7
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 2.5e-30 137.1 187 43.3
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 2.5e-30 137.1 244 38.1
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 5.6e-30 136.0 182 45.1
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 3.6e-29 133.3 205 41.5
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 6.2e-29 132.5 188 44.1
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 2.3e-28 130.6 187 43.3
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 2.3e-28 130.6 188 43.6
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 2.3e-28 130.6 196 45.4
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 2.3e-28 130.6 156 45.5
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 5.2e-28 129.4 179 45.3
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 5.2e-28 129.4 166 44.6
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 8.9e-28 128.6 156 48.1
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 2.6e-27 127.1 188 42.6
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 2.6e-27 127.1 224 39.3
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 3.4e-27 126.7 163 45.4
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 4.4e-27 126.3 110 58.2
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 3.7e-26 123.2 186 41.9
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 4.9e-26 122.9 185 42.2
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 6.4e-26 122.5 211 37.9
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 3.2e-25 120.2 187 41.2
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 4.1e-25 119.8 115 60.0
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 5.4e-25 119.4 159 48.4
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 9.2e-25 118.6 187 43.3
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 1.2e-24 118.2 188 42.6
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 6.2e-21 105.9 152 46.1
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 3.1e-20 103.6 224 35.7
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 1.9e-17 94.4 108 45.4
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 2.1e-16 90.9 163 40.5
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 7.8e-16 89.0 155 35.5
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 3.9e-15 86.7 156 38.5
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 1.9e-14 84.3 159 36.5
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 6.8e-12 75.9 117 47.0
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 6.4e-10 69.3 209 31.1
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.4e-09 68.2 190 31.6
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 9.2e-09 65.5 192 30.2
MD15G1208900 Malus domestica HOM05D004059 ORTHO05D004591 4.6e-08 63.2 100 42.0
Cc06_g11520 Coffea canephora HOM05D004059 ORTHO05D004591 1.3e-07 61.6 143 34.3
AT5G56960 Arabidopsis thaliana HOM05D004059 ORTHO05D004591 1.7e-07 61.2 104 36.5
Carub.0008s1744 Capsella rubella HOM05D004059 ORTHO05D004591 1.7e-07 61.2 103 36.9
Haze_25925 Corylus avellana HOM05D004059 ORTHO05D004591 5.1e-07 59.7 95 42.1
AL8G32820 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 6.6e-07 59.3 68 45.6
Sp6g18670 Schrenkiella parvula HOM05D004059 ORTHO05D004591 6.6e-07 59.3 140 32.1
A02p08850 Brassica napus HOM05D004059 ORTHO05D004591 1.5e-06 58.2 81 45.7
DCAR_011967 Daucus carota HOM05D004059 ORTHO05D004591 1.5e-06 58.2 115 33.0
MD02G1081600 Malus domestica HOM05D004059 ORTHO05D004591 1.5e-06 58.2 100 41.0
Os01g0196300 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 1.5e-06 58.2 67 47.8
Prupe.7G207500 Prunus persica HOM05D004059 ORTHO05D004591 1.5e-06 58.2 100 41.0
BcaC03g14194 Brassica carinata HOM05D004059 ORTHO05D004591 1.9e-06 57.8 81 44.4
C02p14760 Brassica napus HOM05D004059 ORTHO05D004591 1.9e-06 57.8 81 44.4
BolC2t07605H Brassica oleracea HOM05D004059 ORTHO05D004591 1.9e-06 57.8 81 44.4
Dinv36776 Davidia involucrata HOM05D004059 ORTHO05D004591 3.3e-06 57.0 124 33.9
Lj6g0002908 Lotus japonicus HOM05D004059 ORTHO05D004591 4.3e-06 56.6 115 38.3
MBI01_g09949_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 4.3e-06 56.6 160 28.8
Os01g0773800 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D049898 4.3e-06 56.6 149 32.9
BraA02t05954Z Brassica rapa HOM05D004059 ORTHO05D004591 5.6e-06 56.2 121 33.9
CSS0005796 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 5.6e-06 56.2 116 37.1
ClCG03G015470 Citrullus lanatus HOM05D004059 ORTHO05D004591 5.6e-06 56.2 109 34.9
CSS0003764 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 7.3e-06 55.8 99 39.4
CANSAT56G2242 Cannabis sativa HOM05D004059 ORTHO05D004591 7.3e-06 55.8 60 48.3
Dinv42329 Davidia involucrata HOM05D004059 ORTHO05D004591 7.3e-06 55.8 63 49.2
Os01g0195801 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 7.3e-06 55.8 69 44.9
BcaB08g36035 Brassica carinata HOM05D004059 ORTHO05D004591 9.6e-06 55.5 59 50.8


User provided reference genes

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