Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018975 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 3.7e-216 754.6 386 100.0
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.2e-174 616.7 397 84.9
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 5.7e-140 501.5 402 67.4
Actinidia06676 Actinidia chinensis HOM05D003159 ORTHO05D003780 8.5e-136 487.6 403 65.3
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 5.7e-132 474.9 339 71.1
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 1.7e-131 473.4 342 71.6
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 3.7e-131 472.2 328 72.6
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 3.1e-130 469.2 331 71.6
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 1.2e-129 467.2 339 69.6
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 2.9e-128 462.6 331 70.7
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 2.9e-128 462.6 331 70.7
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 2.9e-128 462.6 339 70.2
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 1.1e-127 460.7 331 72.2
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 1.9e-127 459.9 339 68.1
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 4.2e-127 458.8 339 68.7
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 4.2e-127 458.8 425 60.0
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 9.5e-127 457.6 403 62.0
Cpa.g.sc162.3 Carica papaya HOM05D003159 ORTHO05D003780 2.1e-126 456.4 326 71.2
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 2.1e-126 456.4 340 69.1
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 2.1e-126 456.4 340 69.1
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 2.8e-126 456.1 341 69.5
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 8.0e-126 454.5 332 70.2
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 1.0e-125 454.1 328 69.8
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 1.8e-125 453.4 333 69.7
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 3.0e-125 452.6 331 68.9
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 5.2e-125 451.8 339 69.0
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 6.8e-125 451.4 322 71.4
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 6.8e-125 451.4 331 69.8
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 1.5e-124 450.3 339 68.4
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 2.6e-124 449.5 331 69.5
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 3.4e-124 449.1 322 71.4
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 3.4e-124 449.1 339 68.7
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 4.4e-124 448.7 339 68.4
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 5.7e-124 448.4 443 57.6
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 7.5e-124 448.0 339 67.8
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 1.3e-123 447.2 326 69.6
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 2.8e-123 446.0 331 68.9
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 2.8e-123 446.0 341 68.0
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 2.8e-123 446.0 340 66.8
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 3.7e-123 445.7 342 67.0
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 4.9e-123 445.3 341 66.3
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 8.3e-123 444.5 347 65.7
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 1.1e-122 444.1 333 67.9
Gohir.A11G250300 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.1e-122 444.1 340 66.2
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 1.1e-122 444.1 330 68.8
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.4e-122 443.7 340 66.2
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.4e-122 443.7 332 68.1
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 1.4e-122 443.7 380 60.0
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 3.1e-122 442.6 333 67.9
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 3.1e-122 442.6 339 66.4
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 5.4e-122 441.8 332 68.1
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 5.4e-122 441.8 335 67.2
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 7.0e-122 441.4 322 70.2
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 1.6e-121 440.3 348 65.5
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 1.6e-121 440.3 342 66.7
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 2.0e-121 439.9 330 67.3
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 2.7e-121 439.5 335 67.2
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 3.5e-121 439.1 330 67.9
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 7.8e-121 438.0 328 68.0
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 1.0e-120 437.6 468 54.5
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 1.3e-120 437.2 343 65.6
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 1.3e-120 437.2 339 65.8
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 6.6e-120 434.9 337 65.9
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 1.5e-119 433.7 328 67.1
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 2.5e-119 433.0 330 67.3
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 2.5e-119 433.0 330 66.4
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 9.5e-119 431.0 349 63.9
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 9.5e-119 431.0 339 64.6
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 1.2e-118 430.6 325 66.8
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 1.6e-118 430.3 341 64.5
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 2.8e-118 429.5 327 67.9
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 6.1e-118 428.3 331 65.9
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 8.0e-118 427.9 330 66.1
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 1.0e-117 427.6 341 64.5
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 2.3e-117 426.4 327 67.6
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 8.9e-117 424.5 328 65.2
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 1.5e-116 423.7 329 66.9
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 2.6e-116 422.9 330 66.1
Sabra13G0039800 Salix brachista HOM05D003159 ORTHO05D003780 2.6e-116 422.9 365 62.2
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 3.4e-116 422.5 330 66.4
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 9.8e-116 421.0 330 65.8
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 9.8e-116 421.0 330 65.8
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 1.3e-115 420.6 330 65.5
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 1.7e-115 420.2 327 65.4
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 1.7e-115 420.2 330 65.5
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 2.9e-115 419.5 328 64.3
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 3.7e-115 419.1 330 64.8
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 4.9e-115 418.7 330 65.2
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 4.9e-115 418.7 330 63.6
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 6.4e-115 418.3 340 63.8
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 8.3e-115 417.9 327 65.4
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 8.3e-115 417.9 316 69.6
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 1.1e-114 417.5 327 65.4
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 1.1e-114 417.5 327 65.4
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 1.4e-114 417.2 322 66.8
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 1.4e-114 417.2 322 66.8
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 1.4e-114 417.2 344 64.5
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.8e-114 416.8 391 57.8
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 3.2e-114 416.0 322 65.8
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 3.2e-114 416.0 327 65.1
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 4.1e-114 415.6 327 65.1
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 1.2e-113 414.1 322 66.1
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 3.5e-113 412.5 322 65.8
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 3.5e-113 412.5 322 64.6
FAN12G0237 Fragaria x ananassa HOM05D003159 ORTHO05D003780 6.0e-113 411.8 367 60.2
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 1.7e-112 410.2 321 64.2
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 5.0e-112 408.7 391 56.5
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 1.5e-111 407.1 332 62.7
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 7.3e-111 404.8 332 61.4
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 4.7e-110 402.1 342 59.6
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 4.7e-110 402.1 342 59.6
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 1.7e-107 393.7 337 57.9
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 2.4e-106 389.8 331 59.8
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 2.0e-105 386.7 326 58.9
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 2.7e-105 386.3 337 62.6
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 1.3e-104 384.0 292 65.8
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 8.6e-104 381.3 337 60.5
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 1.2e-102 377.5 328 61.6
PSO782G2873 Papaver somniferum HOM05D003159 ORTHO05D003780 2.8e-102 376.3 320 59.7
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 8.3e-99 364.8 295 61.7
FAN11G2158 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.2e-98 362.8 334 58.4
Zm00001eb284760 Zea mays HOM05D003159 ORTHO05D003780 2.1e-97 360.1 295 61.4
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 6.0e-97 358.6 312 60.9
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 6.0e-97 358.6 336 58.9
CDE05G1140 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 3.3e-95 352.8 311 59.2
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 4.7e-94 349.0 320 56.2
AagrBONN_evm.TU.Sc2ySwM_368.1733 Anthoceros agrestis HOM05D003159 ORTHO05D003780 3.3e-87 326.2 327 51.4
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 9.6e-87 324.7 324 54.9
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.6e-86 323.9 317 51.7
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 1.4e-85 320.9 320 51.2
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 1.4e-85 320.9 320 50.9
FAN20G0704 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.3e-79 299.7 266 61.7
Peaxi162Scf00135g01116 Petunia axillaris HOM05D003159 ORTHO05D003780 4.3e-79 299.3 240 66.7
FAN12G4313 Fragaria x ananassa HOM05D003159 ORTHO05D003780 7.3e-79 298.5 194 75.8
CSS0009274 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 5.4e-74 282.3 201 73.1
Sabra19G0025800 Salix brachista HOM05D003159 ORTHO05D003780 3.3e-71 273.1 194 71.1
DCAR_028952 Daucus carota HOM05D003159 ORTHO05D003780 7.4e-71 271.9 203 63.1
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 3.7e-70 269.6 319 43.9
FAN02G3581 Fragaria x ananassa HOM05D001720 ORTHO05D001813 6.7e-64 248.8 256 55.9
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 3.7e-62 243.0 207 66.2
Lalb_Chr06g0166701 Lupinus albus HOM05D003159 ORTHO05D003780 1.1e-61 241.5 183 67.2
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 1.4e-61 241.1 295 43.1
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 2.2e-59 233.8 318 40.3
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 4.2e-58 229.6 321 42.7
SHI06091 Sapria himalayana HOM05D003159 ORTHO05D003780 5.5e-58 229.2 185 60.5
Atru.chr2.869 Acer truncatum HOM05D003159 ORTHO05D003780 9.3e-58 228.4 171 69.0
Haze_20967 Corylus avellana HOM05D003159 ORTHO05D003780 2.1e-57 227.3 166 68.1
SEGI_17525 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 6.7e-56 222.2 180 61.7
Ciclev10003992m.g Citrus clementina HOM05D003159 ORTHO05D003780 4.2e-50 203.0 216 51.9
AUR62033001 Chenopodium quinoa HOM05D003159 ORTHO05D044021 9.1e-45 185.3 168 58.9
Rhsim05G0177800 Rhododendron simsii HOM05D003159 ORTHO05D000029 1.7e-43 181.0 168 58.3
FAN09G4428 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.6e-41 173.3 182 53.8
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 1.0e-40 171.8 324 35.5
Nn1g02653 Nelumbo nucifera HOM05D003159 ORTHO05D003780 2.2e-38 164.1 119 68.1
TPR.G10778 Trifolium pratense HOM05D003159 ORTHO05D003780 4.8e-38 162.9 135 60.0
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 3.9e-32 143.3 121 59.5
Lalb_Chr06g0166731 Lupinus albus HOM05D003159 ORTHO05D003780 8.8e-32 142.1 114 63.2
Lalb_Chr06g0166741 Lupinus albus HOM05D003159 ORTHO05D003780 3.3e-31 140.2 90 71.1
Lalb_Chr06g0166711 Lupinus albus HOM05D003159 ORTHO05D003780 1.7e-30 137.9 98 68.4
Lalb_Chr06g0166751 Lupinus albus HOM05D003159 ORTHO05D003780 1.7e-30 137.9 98 68.4
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 6.3e-30 136.0 86 76.7
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 4.1e-29 133.3 86 73.3
RcHm_v2.0_Chr6g0278951 Rosa chinensis HOM05D003159 ORTHO05D003780 2.6e-28 130.6 111 61.3
RcHm_v2.0_Chr7g0214531 Rosa chinensis HOM05D003159 ORTHO05D003780 3.5e-28 130.2 110 61.8
Nitab4.5_0000261g0140 Nicotiana tabacum HOM05D003159 ORTHO05D003780 8.5e-27 125.6 112 61.6
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 7.2e-26 122.5 80 73.8
FAN09G3226 Fragaria x ananassa HOM05D003159 ORTHO05D003780 9.4e-26 122.1 95 63.2
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 1.0e-24 118.6 84 71.4
SEGI_03130 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 1.0e-24 118.6 86 66.3
SEGI_37742 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 1.0e-24 118.6 86 66.3
Atru.chr2.868 Acer truncatum HOM05D003159 ORTHO05D003780 2.0e-23 114.4 105 58.1
Lsat_1_v5_gn_3_106720 Lactuca sativa HOM05D003159 ORTHO05D003780 1.4e-21 108.2 131 48.1
PGSC0003DMG400002182 Solanum tuberosum HOM05D003159 ORTHO05D003780 5.2e-16 89.7 60 71.7
AUR62010228 Chenopodium quinoa HOM05D003159 ORTHO05D003780 4.7e-09 66.6 64 50.0
Nitab4.5_0001462g0060 Nicotiana tabacum HOM05D003159 ORTHO05D003780 8.3e-06 55.8 51 52.9


User provided reference genes

Program Settings