Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018709 Camellia sinensis var. sinensis HOM05D001716 ORTHO05D005286 5.7e-89 330.9 165 100.0
CSS0031097 Camellia sinensis var. sinensis HOM05D001716 ORTHO05D005286 8.6e-53 210.7 115 93.0
Actinidia11972 Actinidia chinensis HOM05D001716 ORTHO05D005286 9.8e-49 197.2 115 87.8
Actinidia36427 Actinidia chinensis HOM05D001716 ORTHO05D005286 1.7e-48 196.4 115 87.8
Rhsim10G0097300 Rhododendron simsii HOM05D001716 ORTHO05D005286 6.4e-48 194.5 115 87.0
RhsimUnG0241600 Rhododendron simsii HOM05D001716 ORTHO05D005286 6.4e-48 194.5 115 87.0
Dinv23031 Davidia involucrata HOM05D001716 ORTHO05D005286 3.2e-47 192.2 115 85.2
Oeu011981.1 Olea europaea HOM05D001716 ORTHO05D005286 1.6e-46 189.9 217 53.9
Cc07_g07250 Coffea canephora HOM05D001716 ORTHO05D005286 2.1e-46 189.5 115 84.3
CSS0020198 Camellia sinensis var. sinensis HOM05D001716 ORTHO05D005286 1.3e-45 186.8 115 84.3
Dinv26947 Davidia involucrata HOM05D001716 ORTHO05D005286 1.7e-45 186.4 115 81.7
unitig_52.g17605 Utricularia gibba HOM05D001716 ORTHO05D005286 3.0e-45 185.7 159 65.4
Oeu032428.1 Olea europaea HOM05D001716 ORTHO05D005286 3.9e-45 185.3 115 83.5
MSTRG.3477 Avicennia marina HOM05D001716 ORTHO05D005286 1.1e-44 183.7 116 81.9
Peaxi162Scf00155g00315 Petunia axillaris HOM05D001716 ORTHO05D005286 1.5e-44 183.3 115 81.7
Migut.H00335 Erythranthe guttata HOM05D001716 ORTHO05D005286 1.9e-44 183.0 115 81.7
Cc07_g19310 Coffea canephora HOM05D001716 ORTHO05D005286 4.3e-44 181.8 116 80.2
Solyc03g032070.3 Solanum lycopersicum HOM05D001716 ORTHO05D005286 9.5e-44 180.6 115 81.7
Sopen03g005920 Solanum pennellii HOM05D001716 ORTHO05D005286 9.5e-44 180.6 115 81.7
Nitab4.5_0001502g0030 Nicotiana tabacum HOM05D001716 ORTHO05D005286 2.1e-43 179.5 115 78.3
Nitab4.5_0000076g0030 Nicotiana tabacum HOM05D001716 ORTHO05D005286 4.7e-43 178.3 115 77.4
MSTRG.23660 Avicennia marina HOM05D001716 ORTHO05D005286 8.1e-43 177.6 115 79.1
Nn5g30630 Nelumbo nucifera HOM05D001716 ORTHO05D005286 8.1e-43 177.6 112 82.1
CAN.G354.11 Capsicum annuum HOM05D001716 ORTHO05D005286 1.1e-42 177.2 115 79.1
PGSC0003DMG400018681 Solanum tuberosum HOM05D001716 ORTHO05D005286 3.1e-42 175.6 115 80.0
CAN.G1640.14 Capsicum annuum HOM05D001716 ORTHO05D005286 4.0e-42 175.3 115 78.3
CAN.G960.79 Capsicum annuum HOM05D001716 ORTHO05D005286 6.8e-42 174.5 176 58.0
TAR628G0067 Trochodendron aralioides HOM05D001716 ORTHO05D005286 8.9e-42 174.1 112 81.2
TAR381G1690 Trochodendron aralioides HOM05D001716 ORTHO05D005286 1.5e-41 173.3 112 79.5
Hma1.2p1_1662F.1_g296260 Hydrangea macrophylla HOM05D001716 ORTHO05D005286 2.0e-41 172.9 111 76.6
CAN.G959.2 Capsicum annuum HOM05D001716 ORTHO05D005286 3.4e-41 172.2 115 77.4
Lsat_1_v5_gn_9_41920 Lactuca sativa HOM05D001716 ORTHO05D005286 1.3e-40 170.2 113 77.0
ECA232G0678 Erigeron canadensis HOM05D001716 ORTHO05D005286 2.2e-40 169.5 112 77.7
Eucgr.I00692 Eucalyptus grandis HOM05D001716 ORTHO05D005286 2.9e-40 169.1 115 75.7
Glyma.08G335300 Glycine max HOM05D001716 ORTHO05D005286 3.8e-40 168.7 115 77.4
Glyma.18G070300 Glycine max HOM05D001716 ORTHO05D005286 3.8e-40 168.7 115 77.4
Hund16410 Selenicereus undatus HOM05D001716 ORTHO05D005286 3.8e-40 168.7 115 75.7
EL10Ac6g15607 Beta vulgaris HOM05D001716 ORTHO05D005286 4.9e-40 168.3 115 75.7
Manes.12G116100 Manihot esculenta HOM05D001716 ORTHO05D005286 4.9e-40 168.3 115 73.0
HanXRQChr15g0492541 Helianthus annuus HOM05D001716 ORTHO05D005286 8.4e-40 167.5 115 76.5
Zm00001eb107710 Zea mays HOM05D001716 ORTHO05D005286 8.4e-40 167.5 109 80.7
HanXRQChr12g0355061 Helianthus annuus HOM05D001716 ORTHO05D005286 1.1e-39 167.2 106 80.2
CAN.G960.84 Capsicum annuum HOM05D001716 ORTHO05D005286 1.9e-39 166.4 115 75.7
PSO017G1956 Papaver somniferum HOM05D001716 ORTHO05D005286 1.9e-39 166.4 113 77.9
CAN.G1884.3 Capsicum annuum HOM05D001716 ORTHO05D005286 2.4e-39 166.0 115 74.8
CAN.G2058.1 Capsicum annuum HOM05D001716 ORTHO05D005286 2.4e-39 166.0 115 73.9
Sc03g0002460 Simmondsia chinensis HOM05D001716 ORTHO05D005286 3.2e-39 165.6 115 73.9
CAN.G1495.10 Capsicum annuum HOM05D001716 ORTHO05D005286 4.1e-39 165.2 115 74.8
Psat5g162960 Pisum sativum HOM05D001716 ORTHO05D005286 4.1e-39 165.2 113 77.9
CAN.G694.15 Capsicum annuum HOM05D001716 ORTHO05D003208 5.4e-39 164.9 115 74.8
Os06g0186900 Oryza sativa ssp. japonica HOM05D001716 ORTHO05D005286 5.4e-39 164.9 107 81.3
Phvul.006G062800 Phaseolus vulgaris HOM05D001716 ORTHO05D005286 5.4e-39 164.9 115 75.7
Potri.016G096800 Populus trichocarpa HOM05D001716 ORTHO05D005286 5.4e-39 164.9 113 74.3
FvH4_1g17590 Fragaria vesca HOM05D001716 ORTHO05D005286 7.1e-39 164.5 112 77.7
FAN19G0905 Fragaria x ananassa HOM05D001716 ORTHO05D005286 7.1e-39 164.5 112 77.7
FAN23G1487 Fragaria x ananassa HOM05D001716 ORTHO05D005286 7.1e-39 164.5 112 77.7
Manes.13G110200 Manihot esculenta HOM05D001716 ORTHO05D005286 7.1e-39 164.5 115 72.2
Aqoxy3G00404 Aquilegia oxysepala HOM05D001716 ORTHO05D005286 1.2e-38 163.7 116 74.1
DCAR_025814 Daucus carota HOM05D001716 ORTHO05D005286 1.2e-38 163.7 112 75.0
ATR0824G271 Amborella trichopoda HOM05D001716 ORTHO05D005286 1.6e-38 163.3 105 81.9
FAN26G1813 Fragaria x ananassa HOM05D001716 ORTHO05D005286 1.6e-38 163.3 112 76.8
Lalb_Chr15g0082591 Lupinus albus HOM05D001716 ORTHO05D005286 1.6e-38 163.3 115 74.8
ClCG01G017700 Citrullus lanatus HOM05D001716 ORTHO05D005286 2.1e-38 162.9 112 75.9
FAN28G0338 Fragaria x ananassa HOM05D001716 ORTHO05D005286 2.1e-38 162.9 112 76.8
Lalb_Chr18g0050591 Lupinus albus HOM05D001716 ORTHO05D005286 2.1e-38 162.9 115 74.8
Ca_14882_v3 Cicer arietinum L. HOM05D001716 ORTHO05D005286 2.7e-38 162.5 115 74.8
Medtr3g061640 Medicago truncatula HOM05D001716 ORTHO05D005286 3.5e-38 162.2 113 75.2
MELO3C007648.2 Cucumis melo HOM05D001716 ORTHO05D005286 4.6e-38 161.8 112 75.0
CsaV3_6G044230 Cucumis sativus L. HOM05D001716 ORTHO05D005286 4.6e-38 161.8 112 75.0
VMungo0540G0749 Vigna mungo HOM05D001716 ORTHO05D005286 4.6e-38 161.8 115 73.9
RcHm_v2.0_Chr2g0107901 Rosa chinensis HOM05D001716 ORTHO05D005286 1.0e-37 160.6 112 76.8
AUR62037589 Chenopodium quinoa HOM05D001716 ORTHO05D005286 3.9e-37 158.7 115 72.2
TPR.G30127 Trifolium pratense HOM05D001716 ORTHO05D005286 3.9e-37 158.7 113 73.5
arahy.Tifrunner.gnm1.ann1.PJ5Q5S Arachis hypogaea HOM05D001716 ORTHO05D005286 6.6e-37 157.9 115 73.0
Ah.13g075570 Amaranthus hybridus HOM05D001716 ORTHO05D005286 8.6e-37 157.5 107 74.8
arahy.Tifrunner.gnm1.ann1.TSR8I7 Arachis hypogaea HOM05D001716 ORTHO05D005286 8.6e-37 157.5 113 73.5
Psat3g073800 Pisum sativum HOM05D001716 ORTHO05D005286 8.6e-37 157.5 115 73.9
TWI39G0842 Tripterygium wilfordii HOM05D001716 ORTHO05D005286 8.6e-37 157.5 115 70.4
TWI74G0064 Tripterygium wilfordii HOM05D001716 ORTHO05D005286 8.6e-37 157.5 115 72.2
AUR62019612 Chenopodium quinoa HOM05D001716 ORTHO05D005286 1.1e-36 157.1 115 72.2
CiPaw.02G001700 Carya illinoinensis HOM05D001716 ORTHO05D005286 1.5e-36 156.8 115 74.8
Sabra06G0093500 Salix brachista HOM05D001716 ORTHO05D005286 1.9e-36 156.4 112 72.3
Prupe.1G544700 Prunus persica HOM05D001716 ORTHO05D005286 2.5e-36 156.0 112 73.2
Sed0022589 Sechium edule HOM05D001716 ORTHO05D005286 2.5e-36 156.0 106 75.5
Lj6g0016700 Lotus japonicus HOM05D001716 ORTHO05D005286 5.6e-36 154.8 110 73.6
Haze_15267 Corylus avellana HOM05D001716 ORTHO05D005286 9.6e-36 154.1 118 70.3
PGR004G2469 Punica granatum HOM05D001716 ORTHO05D005286 9.6e-36 154.1 115 69.6
QL06p039377 Quercus lobata HOM05D001716 ORTHO05D005286 1.2e-35 153.7 112 74.1
Atru.chr3.1032 Acer truncatum HOM05D001716 ORTHO05D005286 1.6e-35 153.3 114 70.2
CANSAT01G2893 Cannabis sativa HOM05D001716 ORTHO05D005286 2.1e-35 152.9 115 71.3
SGA_v2.0_scaffold34G13838 Striga asiatica HOM05D001716 ORTHO05D005286 8.1e-35 151.0 98 79.6
Duzib187G1319 Durio zibethinus HOM05D001716 ORTHO05D005286 1.8e-34 149.8 112 68.8
SEGI_24014 Sequoiadendron giganteum HOM05D001716 ORTHO05D005286 1.8e-34 149.8 111 70.3
SEGI_31505 Sequoiadendron giganteum HOM05D001716 ORTHO05D005286 1.8e-34 149.8 111 70.3
Thecc.01G074300 Theobroma cacao HOM05D001716 ORTHO05D005286 1.8e-34 149.8 112 68.8
COL.COLO4_11594 Corchorus olitorius HOM05D001716 ORTHO05D005286 2.4e-34 149.4 111 70.3
Duzib264G0207 Durio zibethinus HOM05D001716 ORTHO05D005286 2.4e-34 149.4 112 68.8
Ciclev10025549m.g Citrus clementina HOM05D001716 ORTHO05D005286 3.1e-34 149.1 113 72.6
Mapoly0059s0092 Marchantia polymorpha HOM05D001716 ORTHO05D005286 3.1e-34 149.1 108 72.2
CDE12G0541 Ceratophyllum demersum HOM05D001716 ORTHO05D005286 5.2e-34 148.3 211 46.4
Pp3c14_1470 Physcomitrium patens HOM05D001716 ORTHO05D005286 5.2e-34 148.3 113 69.9
HPP92_008802 Vanilla planifolia HOM05D001716 ORTHO05D005286 5.2e-34 148.3 111 67.6
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 8.9e-34 147.5 108 71.3
A06p32790 Brassica napus HOM05D001716 ORTHO05D005286 2.0e-33 146.4 116 69.0
BraA06t26211Z Brassica rapa HOM05D001716 ORTHO05D005286 2.0e-33 146.4 116 69.0
Potri.006G118900 Populus trichocarpa HOM05D001716 ORTHO05D005286 3.4e-33 145.6 111 68.5
THA.LOC104811581 Tarenaya hassleriana HOM05D001716 ORTHO05D005286 3.4e-33 145.6 100 74.0
SMO356G0332 Selaginella moellendorffii HOM05D001716 ORTHO05D005286 4.4e-33 145.2 100 73.0
CBR_g37720 Chara braunii HOM05D001716 ORTHO05D005286 7.6e-33 144.4 109 71.6
SGA_v2.0_scaffold181G39719 Striga asiatica HOM05D001716 ORTHO05D005286 7.6e-33 144.4 98 76.5
Sp2g29020 Schrenkiella parvula HOM05D001716 ORTHO05D005286 9.9e-33 144.1 114 66.7
Gohir.D03G091700 Gossypium hirsutum HOM05D001716 ORTHO05D005286 1.7e-32 143.3 108 70.4
Gorai.007G224900 Gossypium raimondii HOM05D001716 ORTHO05D005286 1.7e-32 143.3 108 70.4
Gohir.D11G209700 Gossypium hirsutum HOM05D001716 ORTHO05D005286 2.2e-32 142.9 108 69.4
C03p59680 Brassica napus HOM05D001716 ORTHO05D005286 3.8e-32 142.1 113 67.3
BolC3t18230H Brassica oleracea HOM05D001716 ORTHO05D005286 3.8e-32 142.1 113 67.3
Gohir.A11G213500 Gossypium hirsutum HOM05D001716 ORTHO05D005286 3.8e-32 142.1 108 69.4
Carub.0008s2684 Capsella rubella HOM05D001716 ORTHO05D005286 4.9e-32 141.7 110 67.3
Gohir.A03G065400 Gossypium hirsutum HOM05D001716 ORTHO05D005286 4.9e-32 141.7 108 69.4
Thhalv10004147m.g Eutrema salsugineum HOM05D001716 ORTHO05D005286 6.4e-32 141.4 114 67.5
Gorai.003G095100 Gossypium raimondii HOM05D001716 ORTHO05D005286 8.4e-32 141.0 108 69.4
Mapoly0016s0079 Marchantia polymorpha HOM05D001716 ORTHO05D005286 8.4e-32 141.0 108 68.5
AL8G43670 Arabidopsis lyrata HOM05D001716 ORTHO05D005286 1.1e-31 140.6 114 65.8
AT5G67630 Arabidopsis thaliana HOM05D001716 ORTHO05D005286 1.1e-31 140.6 114 65.8
Cre10.g442700 Chlamydomonas reinhardtii HOM05D001716 ORTHO05D005286 1.4e-31 140.2 110 67.3
CARHR158900 Cardamine hirsuta HOM05D001716 ORTHO05D005286 2.7e-30 136.0 106 67.9
AagrBONN_evm.TU.Sc2ySwM_228.3163 Anthoceros agrestis HOM05D001716 ORTHO05D005286 3.5e-30 135.6 107 64.5
MCO12G434 Micromonas commoda HOM05D001716 ORTHO05D005286 6.0e-30 134.8 108 63.9
AagrBONN_evm.TU.Sc2ySwM_362.2421 Anthoceros agrestis HOM05D001716 ORTHO05D005286 1.0e-29 134.0 107 60.7
CARHR279960 Cardamine hirsuta HOM05D001716 ORTHO05D005286 3.9e-29 132.1 106 67.0
Thhalv10010952m.g Eutrema salsugineum HOM05D001716 ORTHO05D005286 7.3e-28 127.9 114 63.2
AT3G49830 Arabidopsis thaliana HOM05D001716 ORTHO05D005286 2.1e-27 126.3 116 58.6
Carub.0005s1618 Capsella rubella HOM05D001716 ORTHO05D005286 5.3e-26 121.7 111 58.6
BcaC04g23241 Brassica carinata HOM05D001716 ORTHO05D019901 7.1e-23 111.3 131 49.6
ATR0224G001 Amborella trichopoda HOM05D001716 ORTHO05D005286 1.3e-21 107.1 71 81.7
FAN26G1334 Fragaria x ananassa HOM05D001716 ORTHO05D005286 3.4e-17 92.4 78 61.5
BolC9t53974H Brassica oleracea HOM05D001716 ORTHO05D005286 1.3e-13 80.5 79 57.0
BcaB04g20039 Brassica carinata HOM05D001716 ORTHO05D005286 1.8e-13 80.1 108 46.3
BcaC04g23239 Brassica carinata HOM05D001716 ORTHO05D005286 1.8e-13 80.1 108 46.3
C09p10790 Brassica napus HOM05D001716 ORTHO05D005286 1.8e-13 80.1 108 46.3
Haze_26491 Corylus avellana HOM05D001716 ORTHO05D005286 2.3e-13 79.7 96 51.0
MD08G1213300 Malus domestica HOM05D001716 ORTHO05D005286 4.0e-10 68.9 55 69.1
AagrBONN_evm.TU.Sc2ySwM_368.3436 Anthoceros agrestis HOM05D001716 ORTHO05D004234 7.1e-07 58.2 95 35.8
MCO03G216 Micromonas commoda HOM05D001716 ORTHO05D004234 7.1e-07 58.2 95 35.8
Os01g0837500 Oryza sativa ssp. japonica HOM05D001716 ORTHO05D004234 9.3e-07 57.8 95 34.7
Os07g0178900 Oryza sativa ssp. japonica HOM05D001716 ORTHO05D004234 1.2e-06 57.4 95 33.7
PRCOL_00001022 Prasinoderma coloniale HOM05D001716 ORTHO05D004234 1.2e-06 57.4 105 36.2
FAN16G0345 Fragaria x ananassa HOM05D001716 ORTHO05D004234 2.1e-06 56.6 95 34.7
FAN21G3845 Fragaria x ananassa HOM05D001716 ORTHO05D004234 2.1e-06 56.6 95 34.7
FAN25G1324 Fragaria x ananassa HOM05D001716 ORTHO05D004234 2.1e-06 56.6 95 34.7
RcHm_v2.0_Chr5g0061781 Rosa chinensis HOM05D001716 ORTHO05D004234 2.1e-06 56.6 95 34.7
SMO351G0419 Selaginella moellendorffii HOM05D001716 ORTHO05D004234 2.1e-06 56.6 95 33.7
Zm00001eb208840 Zea mays HOM05D001716 ORTHO05D004234 2.1e-06 56.6 95 35.8
A03p10690 Brassica napus HOM05D001716 ORTHO05D004234 2.7e-06 56.2 95 35.8
BraA03t10381Z Brassica rapa HOM05D001716 ORTHO05D004234 2.7e-06 56.2 95 34.7
Mapoly0108s0031 Marchantia polymorpha HOM05D001716 ORTHO05D004234 3.5e-06 55.8 95 34.7
Cre09.g414050 Chlamydomonas reinhardtii HOM05D001716 ORTHO05D004234 4.6e-06 55.5 95 34.7
Aa31LG1G13210 Aethionema arabicum HOM05D001716 ORTHO05D004234 6.0e-06 55.1 95 33.7
CANSAT01G3043 Cannabis sativa HOM05D001716 ORTHO05D004234 6.0e-06 55.1 95 34.7
FAN25G1887 Fragaria x ananassa HOM05D001716 ORTHO05D004234 6.0e-06 55.1 95 34.7
MD11G1168700 Malus domestica HOM05D001716 ORTHO05D004234 6.0e-06 55.1 95 34.7
Pp3c16_21430 Physcomitrium patens HOM05D001716 ORTHO05D004234 6.0e-06 55.1 95 33.7
BcaB01g04715 Brassica carinata HOM05D001716 ORTHO05D004234 7.9e-06 54.7 95 34.7
CARHR191210 Cardamine hirsuta HOM05D001716 ORTHO05D004234 7.9e-06 54.7 95 34.7
FvH4_3g34140 Fragaria vesca HOM05D001716 ORTHO05D004234 7.9e-06 54.7 95 34.7
Prupe.6G137000 Prunus persica HOM05D001716 ORTHO05D004234 7.9e-06 54.7 95 34.7


User provided reference genes

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