Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018647 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D109149 4.5e-39 164.1 80 100.0
CSS0016988 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001889 4.2e-29 131.0 68 91.2
CSS0042905 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001889 4.2e-29 131.0 68 91.2
CSS0032794 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001889 1.2e-23 112.8 68 77.9
Dinv26629 Davidia involucrata HOM05D000238 ORTHO05D001889 2.0e-23 112.1 69 78.3
CSS0037474 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001889 2.9e-22 108.2 68 76.5
SGA_v2.0_scaffold46G17362 Striga asiatica HOM05D000238 ORTHO05D001889 2.9e-22 108.2 69 75.4
COL.COLO4_19713 Corchorus olitorius HOM05D000238 ORTHO05D001889 3.8e-22 107.8 69 75.4
Dinv21337 Davidia involucrata HOM05D000238 ORTHO05D001889 3.8e-22 107.8 69 79.7
Manes.12G058500 Manihot esculenta HOM05D000238 ORTHO05D001889 5.0e-22 107.5 69 75.4
Manes.13G058800 Manihot esculenta HOM05D000238 ORTHO05D001889 6.5e-22 107.1 69 75.4
SGA_v2.0_scaffold31G12746 Striga asiatica HOM05D000238 ORTHO05D001889 6.5e-22 107.1 69 72.5
Cpa.g.sc8.3 Carica papaya HOM05D000238 ORTHO05D001889 8.5e-22 106.7 69 72.5
Actinidia18818 Actinidia chinensis HOM05D000238 ORTHO05D001889 1.1e-21 106.3 69 72.5
CANSAT01G2231 Cannabis sativa HOM05D000238 ORTHO05D001889 2.5e-21 105.1 69 73.9
Ciclev10014540m.g Citrus clementina HOM05D000238 ORTHO05D001889 2.5e-21 105.1 69 73.9
Gohir.A07G088400 Gossypium hirsutum HOM05D000238 ORTHO05D001889 2.5e-21 105.1 69 72.5
Gorai.001G100100 Gossypium raimondii HOM05D000238 ORTHO05D001889 2.5e-21 105.1 69 72.5
Gohir.A07G194600 Gossypium hirsutum HOM05D000238 ORTHO05D001889 4.2e-21 104.4 69 72.5
Gohir.D07G201000 Gossypium hirsutum HOM05D000238 ORTHO05D001889 4.2e-21 104.4 69 72.5
Gorai.001G225600 Gossypium raimondii HOM05D000238 ORTHO05D001889 4.2e-21 104.4 69 72.5
Thecc.01G202900 Theobroma cacao HOM05D000238 ORTHO05D001889 4.2e-21 104.4 69 72.5
Potri.002G217300 Populus trichocarpa HOM05D000238 ORTHO05D001889 5.5e-21 104.0 69 71.0
Duzib138G0423 Durio zibethinus HOM05D000238 ORTHO05D001889 9.4e-21 103.2 69 72.5
Gohir.D07G093400 Gossypium hirsutum HOM05D000238 ORTHO05D001889 1.2e-20 102.8 69 71.0
Potri.014G172200 Populus trichocarpa HOM05D000238 ORTHO05D001889 1.2e-20 102.8 68 70.6
CSS0027916 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001889 1.6e-20 102.4 69 72.5
CSS0038039 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001889 1.6e-20 102.4 69 72.5
Duzib133G0801 Durio zibethinus HOM05D000238 ORTHO05D001889 1.6e-20 102.4 69 69.6
Ah.01g014650 Amaranthus hybridus HOM05D000238 ORTHO05D001889 2.1e-20 102.1 69 69.6
Hma1.2p1_2663F.1_g326400 Hydrangea macrophylla HOM05D000238 ORTHO05D001889 2.7e-20 101.7 69 72.5
Atru.chr6.3464 Acer truncatum HOM05D000238 ORTHO05D001889 3.6e-20 101.3 69 69.6
Cc05_g09910 Coffea canephora HOM05D000238 ORTHO05D001889 3.6e-20 101.3 69 68.1
QL04p065505 Quercus lobata HOM05D000238 ORTHO05D001889 4.7e-20 100.9 69 73.9
Sc21g0000310 Simmondsia chinensis HOM05D000238 ORTHO05D001889 4.7e-20 100.9 71 67.6
MSTRG.6171 Avicennia marina HOM05D000238 ORTHO05D001889 6.1e-20 100.5 69 72.5
Duzib211G0209 Durio zibethinus HOM05D000238 ORTHO05D001889 6.1e-20 100.5 69 69.6
Lj6g0024299 Lotus japonicus HOM05D000238 ORTHO05D001889 6.1e-20 100.5 69 66.7
Sp7g09040 Schrenkiella parvula HOM05D000238 ORTHO05D001889 6.1e-20 100.5 69 68.1
TWI18G0389 Tripterygium wilfordii HOM05D000238 ORTHO05D001889 6.1e-20 100.5 69 69.6
AUR62025073 Chenopodium quinoa HOM05D000238 ORTHO05D001889 7.9e-20 100.1 69 68.1
Migut.K00293 Erythranthe guttata HOM05D000238 ORTHO05D001889 7.9e-20 100.1 69 69.6
Lalb_Chr10g0093511 Lupinus albus HOM05D000238 ORTHO05D001889 1.0e-19 99.8 69 66.7
CARHR217970 Cardamine hirsuta HOM05D000238 ORTHO05D001889 1.4e-19 99.4 69 68.1
Lalb_Chr04g0259391 Lupinus albus HOM05D000238 ORTHO05D001889 1.4e-19 99.4 69 65.2
Sabra14G0131800 Salix brachista HOM05D000238 ORTHO05D001889 1.8e-19 99.0 68 69.1
THA.LOC104822449 Tarenaya hassleriana HOM05D000238 ORTHO05D001889 1.8e-19 99.0 69 66.7
Aa31sc156G10 Aethionema arabicum HOM05D000238 ORTHO05D001889 3.0e-19 98.2 69 65.2
AT4G12650 Arabidopsis thaliana HOM05D000238 ORTHO05D001889 3.0e-19 98.2 69 66.7
EL10Ac9g22346 Beta vulgaris HOM05D000238 ORTHO05D001889 3.0e-19 98.2 69 65.2
TWI36G0717 Tripterygium wilfordii HOM05D000238 ORTHO05D001889 3.0e-19 98.2 69 68.1
A04p09200 Brassica napus HOM05D000238 ORTHO05D001889 3.9e-19 97.8 69 66.7
BraA04t16616Z Brassica rapa HOM05D000238 ORTHO05D001889 3.9e-19 97.8 69 66.7
Carub.0007s3019 Capsella rubella HOM05D000238 ORTHO05D001889 3.9e-19 97.8 69 66.7
Glyma.14G003500 Glycine max HOM05D000238 ORTHO05D001889 3.9e-19 97.8 69 66.7
PGR083G2357 Punica granatum HOM05D000238 ORTHO05D001889 3.9e-19 97.8 69 66.7
TPR.G23130 Trifolium pratense HOM05D000238 ORTHO05D001889 3.9e-19 97.8 69 65.2
CSS0025500 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001889 5.1e-19 97.4 69 68.1
TWI36G0423 Tripterygium wilfordii HOM05D000238 ORTHO05D001889 5.1e-19 97.4 69 68.1
AL9U12150 Arabidopsis lyrata HOM05D000238 ORTHO05D001889 6.7e-19 97.1 69 66.7
Medtr3g082140 Medicago truncatula HOM05D000238 ORTHO05D001889 6.7e-19 97.1 68 64.7
Oeu026471.1 Olea europaea HOM05D000238 ORTHO05D001889 6.7e-19 97.1 69 68.1
Peaxi162Scf00111g00058 Petunia axillaris HOM05D000238 ORTHO05D001889 6.7e-19 97.1 69 66.7
Psat0s1566g0120 Pisum sativum HOM05D000238 ORTHO05D001889 6.7e-19 97.1 69 65.2
Migut.J01403 Erythranthe guttata HOM05D000238 ORTHO05D001889 8.8e-19 96.7 69 68.1
Nitab4.5_0004166g0020 Nicotiana tabacum HOM05D000238 ORTHO05D001889 8.8e-19 96.7 69 66.7
BcaB03g16146 Brassica carinata HOM05D000238 ORTHO05D001889 1.1e-18 96.3 69 66.7
BcaC02g09470 Brassica carinata HOM05D000238 ORTHO05D001889 1.1e-18 96.3 69 66.7
C04p43150 Brassica napus HOM05D000238 ORTHO05D001889 1.1e-18 96.3 69 66.7
BolC4t25892H Brassica oleracea HOM05D000238 ORTHO05D001889 1.1e-18 96.3 69 66.7
unitig_46.g18302 Utricularia gibba HOM05D000238 ORTHO05D001889 1.1e-18 96.3 69 66.7
VMungo0540G2197 Vigna mungo HOM05D000238 ORTHO05D001889 1.1e-18 96.3 68 61.8
Nn1g07643 Nelumbo nucifera HOM05D000238 ORTHO05D001889 1.5e-18 95.9 69 68.1
RcHm_v2.0_Chr2g0155171 Rosa chinensis HOM05D000238 ORTHO05D001889 1.5e-18 95.9 69 69.6
Solyc07g056050.1 Solanum lycopersicum HOM05D000238 ORTHO05D001889 1.5e-18 95.9 69 65.2
Sopen07g029410 Solanum pennellii HOM05D000238 ORTHO05D001889 1.5e-18 95.9 69 65.2
MSTRG.10715 Avicennia marina HOM05D000238 ORTHO05D001889 2.0e-18 95.5 69 65.2
Oeu020036.1 Olea europaea HOM05D000238 ORTHO05D001889 2.0e-18 95.5 69 66.7
PGSC0003DMG400031099 Solanum tuberosum HOM05D000238 ORTHO05D001889 2.0e-18 95.5 69 65.2
CAN.G585.5 Capsicum annuum HOM05D000238 ORTHO05D001889 2.6e-18 95.1 69 63.8
Thhalv10024639m.g Eutrema salsugineum HOM05D000238 ORTHO05D001889 2.6e-18 95.1 69 63.8
Phvul.006G012200 Phaseolus vulgaris HOM05D000238 ORTHO05D001889 2.6e-18 95.1 69 59.4
Aa31LG5G18170 Aethionema arabicum HOM05D000238 ORTHO05D001889 3.3e-18 94.7 73 64.4
Aqoxy3G00354 Aquilegia oxysepala HOM05D000238 ORTHO05D001889 3.3e-18 94.7 69 65.2
Gohir.A11G146600 Gossypium hirsutum HOM05D000238 ORTHO05D001889 3.3e-18 94.7 69 63.8
Gorai.007G163300 Gossypium raimondii HOM05D000238 ORTHO05D001889 3.3e-18 94.7 69 65.2
Nitab4.5_0001612g0110 Nicotiana tabacum HOM05D000238 ORTHO05D001889 3.3e-18 94.7 69 65.2
THA.LOC104815381 Tarenaya hassleriana HOM05D000238 ORTHO05D001889 3.3e-18 94.7 69 62.3
AUR62037148 Chenopodium quinoa HOM05D000238 ORTHO05D001889 4.4e-18 94.4 69 65.2
Glyma.02G309400 Glycine max HOM05D000238 ORTHO05D001889 5.7e-18 94.0 69 63.8
Gohir.D11G153300 Gossypium hirsutum HOM05D000238 ORTHO05D001889 5.7e-18 94.0 69 65.2
MD17G1123600 Malus domestica HOM05D000238 ORTHO05D001889 5.7e-18 94.0 69 65.2
MD09G1134700 Malus domestica HOM05D000238 ORTHO05D001889 7.4e-18 93.6 69 63.8
Ca_06488_v3 Cicer arietinum L. HOM05D000238 ORTHO05D001889 9.7e-18 93.2 69 63.8
HanXRQChr15g0492421 Helianthus annuus HOM05D000238 ORTHO05D001889 9.7e-18 93.2 70 67.1
Lalb_Chr17g0337421 Lupinus albus HOM05D000238 ORTHO05D001889 9.7e-18 93.2 69 62.3
ECA236G1083 Erigeron canadensis HOM05D000238 ORTHO05D001889 1.3e-17 92.8 70 67.1
Phvul.008G289600 Phaseolus vulgaris HOM05D000238 ORTHO05D001889 1.3e-17 92.8 69 63.8
Glyma.20G059000 Glycine max HOM05D000238 ORTHO05D001889 1.7e-17 92.4 69 58.0
Lj1P804T37 Lonicera japonica HOM05D000238 ORTHO05D001889 1.7e-17 92.4 67 71.6
Medtr5g098730 Medicago truncatula HOM05D000238 ORTHO05D001889 1.7e-17 92.4 69 63.8
LjContig00081g0027854 Lotus japonicus HOM05D000238 ORTHO05D001889 2.2e-17 92.0 69 63.8
Hund22232 Selenicereus undatus HOM05D000238 ORTHO05D001889 2.2e-17 92.0 69 59.4
TPR.G35886 Trifolium pratense HOM05D000238 ORTHO05D001889 2.2e-17 92.0 69 62.3
Ca_16322_v3 Cicer arietinum L. HOM05D000238 ORTHO05D001889 2.8e-17 91.7 69 58.0
FvH4_6g40160 Fragaria vesca HOM05D000238 ORTHO05D001889 2.8e-17 91.7 69 65.2
Prupe.3G192000 Prunus persica HOM05D000238 ORTHO05D001889 2.8e-17 91.7 68 66.2
SalBow1G4246 Salvia bowleyana HOM05D000238 ORTHO05D001889 2.8e-17 91.7 68 66.2
Glyma.13G026100 Glycine max HOM05D000238 ORTHO05D001889 3.7e-17 91.3 69 58.0
PGR044G1614 Punica granatum HOM05D000238 ORTHO05D001889 3.7e-17 91.3 69 63.8
Rhsim04G0031900 Rhododendron simsii HOM05D000238 ORTHO05D001889 3.7e-17 91.3 69 66.7
HanXRQChr10g0306661 Helianthus annuus HOM05D000238 ORTHO05D001889 4.8e-17 90.9 70 64.3
TAR624G0425 Trochodendron aralioides HOM05D000238 ORTHO05D001889 4.8e-17 90.9 69 62.3
TAR627G0097 Trochodendron aralioides HOM05D000238 ORTHO05D001889 6.3e-17 90.5 69 66.7
arahy.Tifrunner.gnm1.ann1.HB1S9H Arachis hypogaea HOM05D000238 ORTHO05D001889 1.1e-16 89.7 69 58.0
arahy.Tifrunner.gnm1.ann1.JX6SGL Arachis hypogaea HOM05D000238 ORTHO05D001889 1.1e-16 89.7 69 58.0
MBI14_g12731_MAGBIO Magnolia biondii HOM05D000238 ORTHO05D001889 1.1e-16 89.7 69 62.3
ECA234G2447 Erigeron canadensis HOM05D000238 ORTHO05D001889 1.4e-16 89.4 70 62.9
Cfa014186 Carpinus fangiana HOM05D000238 ORTHO05D001889 1.8e-16 89.0 70 67.1
Lsat_1_v5_gn_5_121400 Lactuca sativa HOM05D000238 ORTHO05D001889 1.8e-16 89.0 70 64.3
Os08g0496900 Oryza sativa ssp. japonica HOM05D000238 ORTHO05D001889 1.8e-16 89.0 67 62.7
Eucgr.K01364 Eucalyptus grandis HOM05D000238 ORTHO05D001889 2.4e-16 88.6 70 65.7
MELO3C013467.2 Cucumis melo HOM05D000238 ORTHO05D001889 3.1e-16 88.2 69 58.0
Sed0006574 Sechium edule HOM05D000238 ORTHO05D001889 5.3e-16 87.4 69 58.0
unitig_37.g12549 Utricularia gibba HOM05D000238 ORTHO05D001889 5.3e-16 87.4 68 61.8
Zm00001eb253090 Zea mays HOM05D000238 ORTHO05D001889 5.3e-16 87.4 69 56.5
ClCG02G010620 Citrullus lanatus HOM05D000238 ORTHO05D001889 7.0e-16 87.0 69 55.1
VMungo1383G3063 Vigna mungo HOM05D000238 ORTHO05D001889 7.0e-16 87.0 69 58.0
PSO782G0408 Papaver somniferum HOM05D000238 ORTHO05D001889 9.1e-16 86.7 69 60.9
CsaV3_6G009830 Cucumis sativus L. HOM05D000238 ORTHO05D001889 1.2e-15 86.3 69 56.5
Sed0017527 Sechium edule HOM05D000238 ORTHO05D001889 1.2e-15 86.3 69 58.0
Haze_12563 Corylus avellana HOM05D000238 ORTHO05D001889 1.6e-15 85.9 70 64.3
Lsat_1_v5_gn_7_99181 Lactuca sativa HOM05D000238 ORTHO05D001889 1.6e-15 85.9 69 60.9
SHI10194 Sapria himalayana HOM05D000238 ORTHO05D001889 2.0e-15 85.5 58 65.5
PSO063G4973 Papaver somniferum HOM05D000238 ORTHO05D001889 2.6e-15 85.1 69 59.4
Psat2g001920 Pisum sativum HOM05D000238 ORTHO05D001889 3.5e-15 84.7 69 60.9
Haze_12661 Corylus avellana HOM05D000238 ORTHO05D001889 4.5e-15 84.3 67 61.2
PSO675G1177 Papaver somniferum HOM05D000238 ORTHO05D001889 5.9e-15 84.0 69 56.5
CSS0038247 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001889 7.7e-15 83.6 56 73.2
MD17G1123700 Malus domestica HOM05D000238 ORTHO05D001889 1.0e-14 83.2 69 60.9
PSO541G1011 Papaver somniferum HOM05D000238 ORTHO05D001889 1.7e-14 82.4 69 56.5
CDE06G2245 Ceratophyllum demersum HOM05D000238 ORTHO05D001889 5.0e-14 80.9 68 52.9
MBI15_g26857_MAGBIO Magnolia biondii HOM05D000238 ORTHO05D001889 8.5e-14 80.1 71 54.9
Zm00001eb034000 Zea mays HOM05D000238 ORTHO05D001889 1.5e-13 79.3 66 57.6
Os02g0722300 Oryza sativa ssp. japonica HOM05D000238 ORTHO05D001889 3.2e-13 78.2 69 50.7
ATR0751G197 Amborella trichopoda HOM05D000238 ORTHO05D001889 4.2e-13 77.8 69 55.1
SalBow6G6392 Salvia bowleyana HOM05D000238 ORTHO05D001889 4.2e-13 77.8 55 65.5
Zm00001eb035160 Zea mays HOM05D001362 ORTHO05D001310 9.4e-13 76.6 64 57.8
Zm00001eb189150 Zea mays HOM05D000238 ORTHO05D001889 9.4e-13 76.6 64 57.8
Zm00001eb244880 Zea mays HOM05D000238 ORTHO05D018239 9.4e-13 76.6 64 57.8
Os05g0168500 Oryza sativa ssp. japonica HOM05D000238 ORTHO05D001889 2.7e-12 75.1 63 58.7
Zm00001eb128520 Zea mays HOM05D000238 ORTHO05D001889 5.2e-11 70.9 64 56.2
Eucgr.A00955 Eucalyptus grandis HOM05D000238 ORTHO05D001889 1.1e-10 69.7 55 54.5
SEGI_13247 Sequoiadendron giganteum HOM05D000238 ORTHO05D005437 8.2e-09 63.5 64 48.4
Eucgr.A00954 Eucalyptus grandis HOM05D000238 ORTHO05D001889 1.4e-08 62.8 66 47.0
CDE03G0331 Ceratophyllum demersum HOM05D000238 ORTHO05D001889 2.4e-08 62.0 62 46.8
PGR031G2671 Punica granatum HOM05D000238 ORTHO05D001889 2.0e-07 58.9 61 45.9


User provided reference genes

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