Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018598 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 2.3e-84 315.5 156 100.0
QL03p046958 Quercus lobata HOM05D002859 ORTHO05D003120 3.1e-12 75.9 117 38.5
Nn3g16168 Nelumbo nucifera HOM05D002859 ORTHO05D003120 2.0e-11 73.2 39 82.1
Duzib147G0632 Durio zibethinus HOM05D002859 ORTHO05D003120 2.6e-11 72.8 105 42.9
Prupe.1G209900 Prunus persica HOM05D002859 ORTHO05D003120 2.6e-11 72.8 104 40.4
Nitab4.5_0002113g0060 Nicotiana tabacum HOM05D002859 ORTHO05D003120 3.5e-11 72.4 33 97.0
Nitab4.5_0007261g0050 Nicotiana tabacum HOM05D002859 ORTHO05D003120 3.5e-11 72.4 33 97.0
Peaxi162Scf00760g00025 Petunia axillaris HOM05D002859 ORTHO05D003120 3.5e-11 72.4 33 97.0
Rhsim12G0090700 Rhododendron simsii HOM05D002859 ORTHO05D003120 3.5e-11 72.4 33 97.0
Solyc11g040110.2 Solanum lycopersicum HOM05D002859 ORTHO05D003120 3.5e-11 72.4 33 97.0
Sopen11g017270 Solanum pennellii HOM05D002859 ORTHO05D003120 3.5e-11 72.4 33 97.0
PGSC0003DMG400027997 Solanum tuberosum HOM05D002859 ORTHO05D003120 3.5e-11 72.4 33 97.0
Cfa009482 Carpinus fangiana HOM05D002859 ORTHO05D003120 4.5e-11 72.0 33 93.9
CiPaw.05G096600 Carya illinoinensis HOM05D002859 ORTHO05D003120 4.5e-11 72.0 46 71.7
Haze_12545 Corylus avellana HOM05D002859 ORTHO05D003120 4.5e-11 72.0 33 93.9
Hma1.2p1_0562F.1_g179040 Hydrangea macrophylla HOM05D002859 ORTHO05D003120 4.5e-11 72.0 33 93.9
Lj3A1079G49 Lonicera japonica HOM05D002859 ORTHO05D003120 4.5e-11 72.0 33 93.9
TWI18G0030 Tripterygium wilfordii HOM05D002859 ORTHO05D003120 4.5e-11 72.0 33 93.9
TAR622G0268 Trochodendron aralioides HOM05D002859 ORTHO05D003120 4.5e-11 72.0 33 93.9
arahy.Tifrunner.gnm1.ann1.8K0JZH Arachis hypogaea HOM05D002859 ORTHO05D003120 5.9e-11 71.6 33 90.9
MELO3C017029.2 Cucumis melo HOM05D002859 ORTHO05D003120 5.9e-11 71.6 33 90.9
CsaV3_4G037320 Cucumis sativus L. HOM05D002859 ORTHO05D003120 5.9e-11 71.6 33 90.9
Eucgr.J01700 Eucalyptus grandis HOM05D002859 ORTHO05D003120 5.9e-11 71.6 33 90.9
FvH4_4g21981 Fragaria vesca HOM05D002859 ORTHO05D003120 5.9e-11 71.6 33 90.9
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 5.9e-11 71.6 33 90.9
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 5.9e-11 71.6 33 90.9
TWI36G1325 Tripterygium wilfordii HOM05D002859 ORTHO05D003120 5.9e-11 71.6 61 57.4
GSVIVG01001140001 Vitis vinifera HOM05D002859 ORTHO05D003120 5.9e-11 71.6 33 90.9
MSTRG.19534 Avicennia marina HOM05D002859 ORTHO05D003120 7.7e-11 71.2 56 62.5
HPP92_007177 Vanilla planifolia HOM05D002859 ORTHO05D003120 7.7e-11 71.2 33 93.9
PGR102G2374 Punica granatum HOM05D002859 ORTHO05D003120 1.0e-10 70.9 33 90.9
Actinidia13520 Actinidia chinensis HOM05D002859 ORTHO05D003120 1.3e-10 70.5 33 90.9
Cc11_g14830 Coffea canephora HOM05D002859 ORTHO05D003120 1.3e-10 70.5 33 90.9
PGR119G1480 Punica granatum HOM05D002859 ORTHO05D003120 1.3e-10 70.5 33 90.9
Sed0008148 Sechium edule HOM05D002859 ORTHO05D003120 1.3e-10 70.5 33 87.9
Atru.chr12.1488 Acer truncatum HOM05D002859 ORTHO05D003120 1.7e-10 70.1 33 90.9
SGA_v2.0_scaffold43G16338 Striga asiatica HOM05D002859 ORTHO05D003120 1.7e-10 70.1 33 87.9
Ciclev10029280m.g Citrus clementina HOM05D002859 ORTHO05D003120 2.2e-10 69.7 51 66.7
Os03g0851500 Oryza sativa ssp. japonica HOM05D002859 ORTHO05D003120 2.2e-10 69.7 54 59.3
vmacro15978 Vaccinium macrocarpon HOM05D002859 ORTHO05D003120 2.2e-10 69.7 32 96.9
ECA246G3705 Erigeron canadensis HOM05D002859 ORTHO05D003120 2.9e-10 69.3 33 87.9
Potri.003G158500 Populus trichocarpa HOM05D002859 ORTHO05D003120 2.9e-10 69.3 33 87.9
RcHm_v2.0_Chr4g0428171 Rosa chinensis HOM05D002859 ORTHO05D003120 2.9e-10 69.3 33 87.9
Cpa.g.sc125.35 Carica papaya HOM05D002859 ORTHO05D003120 3.8e-10 68.9 33 87.9
COL.COLO4_15649 Corchorus olitorius HOM05D002859 ORTHO05D003120 3.8e-10 68.9 105 41.0
Migut.C00325 Erythranthe guttata HOM05D002859 ORTHO05D003120 3.8e-10 68.9 33 84.8
Aa31LG3G14170 Aethionema arabicum HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
AL8G19860 Arabidopsis lyrata HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
AT5G47870 Arabidopsis thaliana HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
BcaB04g19538 Brassica carinata HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
BcaB04g19541 Brassica carinata HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
BcaB04g19542 Brassica carinata HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
BcaC04g23802 Brassica carinata HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
A06p39500 Brassica napus HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
C07p38770 Brassica napus HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
C09p04510 Brassica napus HOM05D002859 ORTHO05D003120 5.0e-10 68.6 63 57.1
BolC7t44396H Brassica oleracea HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
BolC9t53381H Brassica oleracea HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
BraA06t26865Z Brassica rapa HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
Carub.0008s0730 Capsella rubella HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
CiPaw.06G112300 Carya illinoinensis HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
Duzib264G1276 Durio zibethinus HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 84.8
Thhalv10004932m.g Eutrema salsugineum HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
Sp2g18370 Schrenkiella parvula HOM05D002859 ORTHO05D003120 5.0e-10 68.6 33 87.9
DCAR_024637 Daucus carota HOM05D001551 ORTHO05D003120 6.5e-10 68.2 60 55.0
Glyma.20G249700 Glycine max HOM05D002859 ORTHO05D003120 6.5e-10 68.2 33 84.8
Gohir.A09G003000 Gossypium hirsutum HOM05D002859 ORTHO05D003120 6.5e-10 68.2 33 84.8
Gohir.D06G123600 Gossypium hirsutum HOM05D002859 ORTHO05D003120 6.5e-10 68.2 33 84.8
Gohir.D09G002800 Gossypium hirsutum HOM05D002859 ORTHO05D003120 6.5e-10 68.2 33 84.8
Gorai.006G003500 Gossypium raimondii HOM05D002859 ORTHO05D003120 6.5e-10 68.2 33 84.8
Gorai.010G143800 Gossypium raimondii HOM05D002859 ORTHO05D003120 6.5e-10 68.2 33 84.8
LjContig00470g0013393 Lotus japonicus HOM05D002859 ORTHO05D003120 6.5e-10 68.2 33 84.8
Lalb_Chr02g0144701 Lupinus albus HOM05D002859 ORTHO05D003120 6.5e-10 68.2 33 84.8
PSO017G4346 Papaver somniferum HOM05D002859 ORTHO05D003120 6.5e-10 68.2 33 81.8
PSO478G1678 Papaver somniferum HOM05D002859 ORTHO05D003120 6.5e-10 68.2 33 81.8
Phvul.007G000200 Phaseolus vulgaris HOM05D002859 ORTHO05D003120 6.5e-10 68.2 33 84.8
VMungo0720G1303 Vigna mungo HOM05D002859 ORTHO05D003120 6.5e-10 68.2 33 84.8
Aqoxy5G02902 Aquilegia oxysepala HOM05D002859 ORTHO05D003120 8.5e-10 67.8 33 84.8
EL10Ac6g13615 Beta vulgaris HOM05D002859 ORTHO05D003120 8.5e-10 67.8 33 87.9
Zm00001eb064620 Zea mays HOM05D002859 ORTHO05D003120 8.5e-10 67.8 54 57.4
MSTRG.6038 Avicennia marina HOM05D002859 ORTHO05D003120 1.1e-09 67.4 51 60.8
Manes.08G097900 Manihot esculenta HOM05D002859 ORTHO05D003120 1.1e-09 67.4 33 84.8
THA.LOC104801415 Tarenaya hassleriana HOM05D002859 ORTHO05D003120 1.1e-09 67.4 33 84.8
HPP92_001279 Vanilla planifolia HOM05D002859 ORTHO05D003120 1.1e-09 67.4 33 87.9
Ah.03g135470 Amaranthus hybridus HOM05D002859 ORTHO05D003120 1.5e-09 67.0 33 87.9
HanXRQChr06g0175341 Helianthus annuus HOM05D002859 ORTHO05D003120 1.5e-09 67.0 33 84.8
Medtr6g004130 Medicago truncatula HOM05D002859 ORTHO05D003120 1.5e-09 67.0 33 81.8
Psat1g053360 Pisum sativum HOM05D002859 ORTHO05D003120 1.5e-09 67.0 33 81.8
SalBow7G1391 Salvia bowleyana HOM05D002859 ORTHO05D003120 1.5e-09 67.0 31 90.3
Thecc.01G233400 Theobroma cacao HOM05D002859 ORTHO05D003120 1.5e-09 67.0 33 81.8
AUR62005721 Chenopodium quinoa HOM05D002859 ORTHO05D003120 1.9e-09 66.6 33 87.9
AUR62028836 Chenopodium quinoa HOM05D002859 ORTHO05D003120 1.9e-09 66.6 33 87.9
Eucgr.B03576 Eucalyptus grandis HOM05D002859 ORTHO05D003120 1.9e-09 66.6 33 84.8
Gohir.A06G110404 Gossypium hirsutum HOM05D002859 ORTHO05D003120 1.9e-09 66.6 33 81.8
Oeu020000.2 Olea europaea HOM05D002859 ORTHO05D003120 1.9e-09 66.6 32 87.5
QL09p023342 Quercus lobata HOM05D002593 ORTHO05D008082 1.9e-09 66.6 32 87.5
QL93p2009_0021 Quercus lobata HOM05D002593 ORTHO05D008082 1.9e-09 66.6 32 87.5
unitig_26.g9853 Utricularia gibba HOM05D002859 ORTHO05D003120 1.9e-09 66.6 33 81.8
A09p04270 Brassica napus HOM05D002859 ORTHO05D003120 2.5e-09 66.2 33 84.8
BraA09t36064Z Brassica rapa HOM05D002859 ORTHO05D003120 2.5e-09 66.2 33 84.8
CARHR184440 Cardamine hirsuta HOM05D002859 ORTHO05D003120 2.5e-09 66.2 33 84.8
Sabra03G0115000 Salix brachista HOM05D002859 ORTHO05D003120 2.5e-09 66.2 31 90.3
TPR.G25234 Trifolium pratense HOM05D002859 ORTHO05D003120 2.5e-09 66.2 31 87.1
AUR62032914 Chenopodium quinoa HOM05D002859 ORTHO05D003120 3.2e-09 65.9 31 93.5
Lsat_1_v5_gn_3_33360 Lactuca sativa HOM05D002859 ORTHO05D003120 3.2e-09 65.9 33 81.8
Ah.02g131400 Amaranthus hybridus HOM05D002859 ORTHO05D003120 5.5e-09 65.1 33 84.8
CDE02G1285 Ceratophyllum demersum HOM05D002859 ORTHO05D003120 5.5e-09 65.1 33 78.8
CDE02G4248 Ceratophyllum demersum HOM05D002859 ORTHO05D003120 7.2e-09 64.7 33 84.8
Ca_04133_v3 Cicer arietinum L. HOM05D002859 ORTHO05D003120 7.2e-09 64.7 33 78.8
unitig_749.g13863 Utricularia gibba HOM05D002859 ORTHO05D003120 7.2e-09 64.7 33 81.8
Sabra01G0050900 Salix brachista HOM05D002859 ORTHO05D003120 2.1e-08 63.2 32 81.2
C07p05140 Brassica napus HOM05D002859 ORTHO05D003120 6.1e-08 61.6 33 84.8
BolC7t40912H Brassica oleracea HOM05D002859 ORTHO05D003120 6.1e-08 61.6 33 84.8
Os09g0512800 Oryza sativa ssp. japonica HOM05D002859 ORTHO05D003120 6.1e-08 61.6 33 75.8
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 1.0e-07 60.8 45 64.4
Potri.001G072300 Populus trichocarpa HOM05D002859 ORTHO05D003120 1.0e-07 60.8 33 75.8
Zm00001eb318170 Zea mays HOM05D002859 ORTHO05D003120 1.0e-07 60.8 33 72.7
Dinv07615 Davidia involucrata HOM05D002859 ORTHO05D003120 1.4e-07 60.5 27 96.3
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.4e-07 60.5 45 64.4
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.4e-07 60.5 45 64.4
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 2.3e-07 59.7 47 63.8
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 3.0e-07 59.3 45 64.4
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 3.0e-07 59.3 45 64.4
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 3.0e-07 59.3 45 64.4
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 3.0e-07 59.3 45 64.4
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 3.0e-07 59.3 45 64.4
ATR0582G250 Amborella trichopoda HOM05D002859 ORTHO05D003120 5.2e-07 58.5 34 73.5
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 5.2e-07 58.5 38 73.7
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 6.7e-07 58.2 45 62.2
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.7e-07 58.2 42 64.3
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 6.7e-07 58.2 45 62.2
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 6.7e-07 58.2 45 62.2
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 8.8e-07 57.8 42 66.7
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 8.8e-07 57.8 42 66.7
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 8.8e-07 57.8 42 66.7
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 8.8e-07 57.8 42 66.7
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 8.8e-07 57.8 44 63.6
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 8.8e-07 57.8 42 66.7
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 8.8e-07 57.8 42 66.7
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 2.0e-06 56.6 42 64.3
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 2.0e-06 56.6 45 60.0
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 3.3e-06 55.8 45 62.2
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 7.5e-06 54.7 47 53.2
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 7.5e-06 54.7 48 62.5
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 9.7e-06 54.3 45 60.0


User provided reference genes

Program Settings