Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018466 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 4.5e-45 184.1 87 100.0
CSS0035332 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 4.1e-38 161.0 87 90.8
BNapus_Darmor_BZH_scaffold_99p00260 Brassica napus HOM05D003197 ORTHO05D003769 2.9e-07 58.5 58 53.4
BraA01t04618Z Brassica rapa HOM05D003197 ORTHO05D003769 2.9e-07 58.5 58 53.4
Gohir.A07G126400 Gossypium hirsutum HOM05D003197 ORTHO05D003769 2.9e-07 58.5 49 65.3
Gohir.D07G130500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 2.9e-07 58.5 49 65.3
Gohir.D13G125000 Gossypium hirsutum HOM05D003197 ORTHO05D003769 2.9e-07 58.5 49 65.3
Gorai.001G141300 Gossypium raimondii HOM05D003197 ORTHO05D003769 2.9e-07 58.5 49 65.3
Gorai.004G132900 Gossypium raimondii HOM05D003197 ORTHO05D003769 2.9e-07 58.5 49 65.3
Cfa005865 Carpinus fangiana HOM05D003197 ORTHO05D003769 4.9e-07 57.8 49 63.3
ClCG10G011140 Citrullus lanatus HOM05D003197 ORTHO05D003769 4.9e-07 57.8 49 63.3
Duzib211G0223 Durio zibethinus HOM05D003197 ORTHO05D003769 4.9e-07 57.8 59 52.5
Nitab4.5_0000116g0300 Nicotiana tabacum HOM05D003197 ORTHO05D003769 4.9e-07 57.8 49 63.3
Nitab4.5_0007413g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 4.9e-07 57.8 49 63.3
Nitab4.5_0009662g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 4.9e-07 57.8 49 63.3
CSS0002671 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 61.2
CSS0038182 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 61.2
MELO3C017938.2 Cucumis melo HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 63.3
CsaV3_4G001010 Cucumis sativus L. HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 63.3
FvH4_2g26140 Fragaria vesca HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 63.3
FAN24G1606 Fragaria x ananassa HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 63.3
Peaxi162Scf00001g00341 Petunia axillaris HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 61.2
Peaxi162Scf00362g01196 Petunia axillaris HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 61.2
PRCOL_00002149 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 61.2
Prupe.8G265300 Prunus persica HOM05D003197 ORTHO05D003769 6.4e-07 57.4 59 52.5
Rhsim06G0161700 Rhododendron simsii HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 61.2
Rhsim07G0104500 Rhododendron simsii HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 61.2
Rhsim13G0008000 Rhododendron simsii HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 61.2
RcHm_v2.0_Chr6g0294521 Rosa chinensis HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 63.3
Solyc09g075450.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 61.2
Sopen09g030240 Solanum pennellii HOM05D003197 ORTHO05D003769 6.4e-07 57.4 49 61.2
EL10Ac6g15230 Beta vulgaris HOM05D003197 ORTHO05D003769 8.4e-07 57.0 49 59.2
AUR62008718 Chenopodium quinoa HOM05D003197 ORTHO05D003769 8.4e-07 57.0 49 61.2
AUR62025515 Chenopodium quinoa HOM05D003197 ORTHO05D003769 8.4e-07 57.0 49 61.2
Duzib138G1374 Durio zibethinus HOM05D003197 ORTHO05D003769 8.4e-07 57.0 49 63.3
Sed0011546 Sechium edule HOM05D003197 ORTHO05D003769 8.4e-07 57.0 49 61.2
CAN.G1280.13 Capsicum annuum HOM05D003197 ORTHO05D003769 1.1e-06 56.6 49 61.2
Sc05g0003520 Simmondsia chinensis HOM05D003197 ORTHO05D003769 1.1e-06 56.6 49 61.2
Ah.08g213570 Amaranthus hybridus HOM05D003197 ORTHO05D003769 1.4e-06 56.2 49 59.2
AagrBONN_evm.TU.Sc2ySwM_228.3677 Anthoceros agrestis HOM05D003197 ORTHO05D003769 1.4e-06 56.2 49 61.2
Cpa.g.sc151.34 Carica papaya HOM05D003197 ORTHO05D003769 1.4e-06 56.2 49 61.2
Glyma.02G015800 Glycine max HOM05D003197 ORTHO05D003769 1.4e-06 56.2 49 61.2
Nitab4.5_0000803g0020 Nicotiana tabacum HOM05D003197 ORTHO05D003769 1.4e-06 56.2 49 61.2
TWI23G1200 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 1.4e-06 56.2 49 61.2
TWI59G0305 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 1.4e-06 56.2 49 61.2
COL.COLO4_23299 Corchorus olitorius HOM05D003197 ORTHO05D003769 1.9e-06 55.8 49 61.2
Rhsim06G0161500 Rhododendron simsii HOM05D003197 ORTHO05D003769 1.9e-06 55.8 49 59.2
Thecc.01G306500 Theobroma cacao HOM05D003197 ORTHO05D003769 1.9e-06 55.8 49 61.2
CSS0016425 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D109657 2.4e-06 55.5 71 49.3
FAN27G3019 Fragaria x ananassa HOM05D003197 ORTHO05D003769 2.4e-06 55.5 49 63.3
Gorai.013G139800 Gossypium raimondii HOM05D003197 ORTHO05D003769 2.4e-06 55.5 49 63.3
Ciclev10019838m.g Citrus clementina HOM05D003197 ORTHO05D003769 3.2e-06 55.1 49 59.2
Gohir.A08G041500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 3.2e-06 55.1 49 59.2
Gohir.D08G051600 Gossypium hirsutum HOM05D003197 ORTHO05D003769 3.2e-06 55.1 49 59.2
Gorai.004G051500 Gossypium raimondii HOM05D003197 ORTHO05D003769 3.2e-06 55.1 49 59.2
MD00G1140200 Malus domestica HOM05D003197 ORTHO05D003769 3.2e-06 55.1 49 59.2
arahy.Tifrunner.gnm1.ann1.5H6FCE Arachis hypogaea HOM05D003197 ORTHO05D003769 4.2e-06 54.7 49 59.2
arahy.Tifrunner.gnm1.ann1.BU45MS Arachis hypogaea HOM05D003197 ORTHO05D003769 4.2e-06 54.7 49 59.2
CARHR257280 Cardamine hirsuta HOM05D003197 ORTHO05D003769 4.2e-06 54.7 49 57.1
Cpa.g.sc27.118 Carica papaya HOM05D003197 ORTHO05D003769 4.2e-06 54.7 49 61.2
Dinv33079 Davidia involucrata HOM05D003197 ORTHO05D003769 4.2e-06 54.7 49 59.2
Glyma.02G015700 Glycine max HOM05D003197 ORTHO05D003769 4.2e-06 54.7 49 57.1
Glyma.10G016200 Glycine max HOM05D003197 ORTHO05D003769 4.2e-06 54.7 49 57.1
HanXRQChr06g0167721 Helianthus annuus HOM05D003197 ORTHO05D003769 4.2e-06 54.7 49 57.1
Lj5A370G55 Lonicera japonica HOM05D003197 ORTHO05D003769 4.2e-06 54.7 49 57.1
Lj5g0001576 Lotus japonicus HOM05D003197 ORTHO05D003769 4.2e-06 54.7 49 59.2
RcHm_v2.0_Chr6g0294511 Rosa chinensis HOM05D003197 ORTHO05D003769 4.2e-06 54.7 49 59.2
Hund12826 Selenicereus undatus HOM05D003197 ORTHO05D003769 4.2e-06 54.7 49 59.2
Atru.chr6.1651 Acer truncatum HOM05D003197 ORTHO05D003769 5.4e-06 54.3 49 61.2
AL8G25140 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 5.4e-06 54.3 49 59.2
AT5G50950 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 5.4e-06 54.3 49 59.2
CANSAT80G1297 Cannabis sativa HOM05D003197 ORTHO05D003769 5.4e-06 54.3 49 61.2
CAN.G862.60 Capsicum annuum HOM05D003197 ORTHO05D003769 5.4e-06 54.3 48 60.4
ECA236G1793 Erigeron canadensis HOM05D003197 ORTHO05D003769 5.4e-06 54.3 49 57.1
HanXRQChr04g0114721 Helianthus annuus HOM05D003197 ORTHO05D003769 5.4e-06 54.3 49 57.1
Potri.002G201300 Populus trichocarpa HOM05D003197 ORTHO05D003769 5.4e-06 54.3 49 59.2
Sabra02G0157600 Salix brachista HOM05D003197 ORTHO05D003769 5.4e-06 54.3 49 59.2
Aa31LG1G28820 Aethionema arabicum HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
AL4G47080 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
AT2G47510 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
BcaC02g06979 Brassica carinata HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
BcaC02g12803 Brassica carinata HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
BcaC09g47716 Brassica carinata HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
BcaC09g47717 Brassica carinata HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
BcaC09g47718 Brassica carinata HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
A04p34960 Brassica napus HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
A05p00410 Brassica napus HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
C04p00340 Brassica napus HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
C04p00370 Brassica napus HOM05D003197 ORTHO05D000780 7.1e-06 53.9 49 57.1
C04p72860 Brassica napus HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
BolC4t21676H Brassica oleracea HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
BolC4t21682H Brassica oleracea HOM05D003197 ORTHO05D000780 7.1e-06 53.9 49 57.1
BolC4t28767H Brassica oleracea HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
Carub.0004s3025 Capsella rubella HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
Carub.0008s1096 Capsella rubella HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 59.2
CARHR142910 Cardamine hirsuta HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
Thhalv10001422m.g Eutrema salsugineum HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
Phvul.007G217600 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
Sp4g29450 Schrenkiella parvula HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
THA.LOC104802185 Tarenaya hassleriana HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
VMungo0720G1283 Vigna mungo HOM05D003197 ORTHO05D003769 7.1e-06 53.9 49 57.1
CBR_g26174 Chara braunii HOM05D003197 ORTHO05D003769 9.3e-06 53.5 48 60.4
Migut.D00123 Erythranthe guttata HOM05D003197 ORTHO05D003769 9.3e-06 53.5 49 59.2
Lalb_Chr02g0146531 Lupinus albus HOM05D003197 ORTHO05D003769 9.3e-06 53.5 49 57.1
Manes.03G058700 Manihot esculenta HOM05D003197 ORTHO05D003769 9.3e-06 53.5 49 59.2
Manes.05G000300 Manihot esculenta HOM05D003197 ORTHO05D003769 9.3e-06 53.5 49 59.2
Hund05454 Selenicereus undatus HOM05D003197 ORTHO05D003769 9.3e-06 53.5 48 60.4


User provided reference genes

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