Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 4.0e-128 461.5 237 100.0
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.5e-98 362.5 221 87.8
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 7.4e-74 281.2 226 68.1
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 8.2e-73 277.7 191 77.0
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 3.1e-72 275.8 229 65.5
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 3.5e-71 272.3 220 66.8
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 5.0e-70 268.5 224 65.6
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 8.5e-70 267.7 220 65.0
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 8.5e-70 267.7 244 60.2
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 1.5e-69 266.9 223 64.1
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 1.9e-69 266.5 220 65.5
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 5.5e-69 265.0 221 64.7
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 6.1e-68 261.5 226 65.0
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 8.0e-68 261.2 223 63.7
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 2.3e-67 259.6 223 63.7
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 2.3e-67 259.6 223 63.7
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 2.3e-67 259.6 220 62.7
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 3.0e-67 259.2 222 62.6
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 3.0e-67 259.2 220 63.2
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 3.4e-66 255.8 231 61.0
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 4.4e-66 255.4 231 61.9
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 9.7e-66 254.2 221 63.8
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 3.1e-64 249.2 222 61.7
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 5.3e-64 248.4 227 60.8
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 2.0e-63 246.5 225 60.4
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 1.0e-62 244.2 234 60.3
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 3.8e-62 242.3 215 61.4
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 6.5e-62 241.5 215 60.9
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 6.5e-62 241.5 220 59.5
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 1.1e-61 240.7 225 59.1
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 1.9e-61 240.0 227 58.1
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 9.4e-61 237.7 234 56.4
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 1.6e-60 236.9 207 60.4
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 6.1e-60 235.0 205 62.0
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 1.0e-59 234.2 223 58.7
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 4.0e-59 232.3 213 58.2
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 8.8e-59 231.1 269 51.3
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.0e-58 229.9 217 59.9
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 5.7e-58 228.4 188 63.3
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 7.5e-58 228.0 190 64.2
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 1.3e-57 227.3 206 60.2
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 2.2e-57 226.5 219 59.4
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 2.8e-57 226.1 231 54.1
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 2.8e-57 226.1 220 55.9
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 4.8e-57 225.3 213 57.3
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 6.3e-57 224.9 221 57.9
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 1.8e-56 223.4 229 54.6
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 3.1e-56 222.6 190 61.1
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 7.0e-56 221.5 221 57.5
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 9.1e-56 221.1 213 54.9
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 9.1e-56 221.1 211 57.3
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.6e-55 220.3 229 53.3
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.6e-55 220.3 278 50.4
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 2.0e-55 219.9 221 54.3
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 2.0e-55 219.9 221 54.8
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 2.0e-55 219.9 213 56.8
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.9e-55 218.4 231 53.2
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 7.7e-55 218.0 310 45.5
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 7.7e-55 218.0 219 54.8
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 1.0e-54 217.6 224 53.6
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 1.0e-54 217.6 224 53.6
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 2.9e-54 216.1 219 53.9
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 1.1e-53 214.2 231 53.2
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 1.5e-53 213.8 219 53.4
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 1.9e-53 213.4 221 54.8
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 1.9e-53 213.4 230 53.0
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.5e-53 213.0 230 51.7
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 2.5e-53 213.0 201 58.2
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 2.5e-53 213.0 221 55.7
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 3.3e-53 212.6 230 53.0
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 5.5e-53 211.8 221 53.8
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 7.2e-53 211.5 220 55.0
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 9.5e-53 211.1 221 55.2
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.2e-52 210.7 221 53.8
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 2.8e-52 209.5 221 53.8
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.8e-52 209.5 212 55.2
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.8e-52 209.5 229 52.8
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 4.7e-52 208.8 221 53.4
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 6.1e-52 208.4 199 59.8
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.0e-51 207.6 190 60.5
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.0e-51 207.6 230 52.2
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 1.4e-51 207.2 202 55.4
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 1.8e-51 206.8 221 53.8
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 1.8e-51 206.8 221 53.8
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 2.3e-51 206.5 190 61.1
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 8.9e-51 204.5 236 50.0
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 9.8e-50 201.1 189 59.8
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 1.7e-49 200.3 161 69.6
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 1.7e-49 200.3 207 50.7
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 2.8e-49 199.5 240 48.3
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 4.9e-49 198.7 229 50.7
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 8.3e-49 198.0 165 66.1
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 3.2e-48 196.1 354 39.0
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 3.2e-48 196.1 201 55.2
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 3.2e-48 196.1 196 56.6
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.2e-47 194.1 217 52.5
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 1.7e-46 190.3 211 50.2
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 2.9e-46 189.5 162 64.8
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 4.3e-45 185.7 223 48.9
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 7.3e-45 184.9 218 49.5
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 8.9e-43 177.9 256 43.8
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.6e-42 176.4 182 53.3
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 7.5e-42 174.9 203 47.3
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 1.3e-41 174.1 198 45.5
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 2.4e-40 169.9 221 43.4
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 4.1e-40 169.1 131 65.6
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 4.1e-40 169.1 201 51.2
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 7.8e-39 164.9 184 49.5
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 6.6e-38 161.8 149 59.7
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 6.6e-38 161.8 155 59.4
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 8.6e-38 161.4 224 42.9
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 1.6e-36 157.1 266 40.2
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 5.2e-35 152.1 218 39.9
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 5.2e-35 152.1 178 53.4
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 6.4e-33 145.2 129 64.3
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 1.1e-32 144.4 111 67.6
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 4.1e-32 142.5 141 54.6
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 4.6e-31 139.0 168 51.8
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 1.3e-30 137.5 172 52.9
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.2e-28 131.0 209 35.9
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 8.9e-27 124.8 118 51.7
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 5.8e-26 122.1 161 46.6
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 7.6e-26 121.7 214 40.2
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 3.2e-24 116.3 154 46.1
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 9.2e-24 114.8 243 35.4
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.1e-21 107.8 86 66.3
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 1.1e-21 107.8 106 55.7
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.0e-18 97.1 168 40.5
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 4.4e-18 95.9 99 53.5
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.9e-16 90.5 54 81.5
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 9.3e-16 88.2 170 34.7
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.1e-15 87.0 207 33.3
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 2.7e-15 86.7 84 58.3
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.6e-14 82.0 98 50.0
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 1.4e-11 74.3 198 26.8
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.8e-11 73.9 70 58.6
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 2.6e-10 70.1 85 47.1
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 7.6e-10 68.6 130 36.2
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 1.7e-09 67.4 208 27.9
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 3.8e-09 66.2 143 32.9
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 9.3e-08 61.6 45 73.3
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 9.3e-08 61.6 75 46.7
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 1.0e-06 58.2 63 47.6


User provided reference genes

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