Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1226.8 623 100.0
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1169.1 637 92.6
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 637 91.7
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1157.9 636 91.8
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 637 90.4
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 637 89.8
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 637 90.0
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 634 90.2
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 637 90.0
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 637 89.5
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1135.9 637 89.0
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 635 89.4
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1134.0 637 89.8
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 637 88.9
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 635 89.3
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 647 88.4
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 635 89.1
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 634 90.1
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 635 89.1
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1131.7 637 89.0
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 637 88.7
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1127.9 631 89.4
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1127.5 637 88.5
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1126.7 633 89.6
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1126.3 637 88.2
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1126.3 637 88.4
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1125.9 635 89.1
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 637 88.7
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 637 88.2
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 632 89.6
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 637 88.4
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1124.0 630 89.5
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1123.6 637 88.5
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 632 88.8
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 634 88.3
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1122.5 637 88.1
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1121.3 631 89.2
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1121.3 637 87.9
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 637 88.1
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 637 87.9
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1119.0 637 87.6
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1119.0 637 87.8
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1118.2 637 87.8
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1117.4 637 87.9
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1116.7 632 88.8
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1115.9 633 88.3
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1115.1 631 88.4
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1114.8 637 87.4
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1114.4 637 87.4
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1113.6 637 88.4
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1112.8 632 87.8
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1111.3 635 88.0
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1111.3 635 87.6
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1110.9 635 87.1
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1109.7 637 87.4
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1109.4 637 86.5
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1109.4 632 87.7
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1109.0 632 87.7
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1108.6 632 88.9
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1107.4 632 87.5
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1107.0 637 87.3
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1106.7 630 86.8
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1105.1 637 87.1
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1104.7 627 88.2
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1104.0 634 86.1
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1102.4 636 86.0
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1100.9 635 86.3
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1100.5 664 84.3
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1100.1 635 85.7
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1100.1 635 86.0
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1099.7 634 85.5
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1099.3 630 86.7
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1099.0 630 86.5
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1096.3 630 86.3
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1096.3 630 86.5
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1096.3 630 86.5
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1096.3 630 86.5
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1095.9 630 86.2
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1095.5 630 86.5
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1094.0 630 86.0
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1093.6 630 86.3
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1091.6 631 86.1
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1091.6 632 86.9
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1088.9 630 87.0
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1085.1 637 85.4
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1080.5 637 84.9
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1080.1 634 84.2
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1078.5 630 85.7
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1078.5 634 84.5
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1077.8 634 84.1
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1076.2 632 84.5
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1075.5 632 85.4
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 4.3e-312 1073.9 634 84.2
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 4.3e-312 1073.5 634 84.1
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 8.5e-312 1073.2 632 84.2
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 2.7e-309 1064.7 635 84.3
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 5.9e-304 1047.0 628 82.8
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 1.0e-303 1046.2 634 82.3
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 1.0e-303 1046.2 647 82.7
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 1.9e-302 1042.0 628 82.6
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 1.4e-300 1035.8 628 82.0
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 4.1e-297 1024.2 582 87.6
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 6.3e-290 1000.3 631 78.8
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 7.5e-283 976.9 632 76.7
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 8.0e-277 956.8 541 89.3
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 7.8e-272 940.3 534 87.8
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.3e-271 939.5 534 88.0
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 4.3e-262 907.9 648 72.2
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 5.6e-254 880.9 635 72.6
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 2.8e-253 878.6 629 71.1
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 3.6e-253 878.2 499 87.8
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 9.9e-251 870.2 649 69.5
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 8.1e-245 850.5 503 86.9
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 7.1e-241 837.4 620 72.9
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 4.0e-236 821.6 621 71.8
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.9e-234 815.5 503 82.9
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 2.7e-224 782.3 637 64.2
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 2.5e-222 775.8 496 79.2
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.5e-214 749.2 638 60.7
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 7.7e-195 684.5 444 79.5
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 7.2e-185 651.4 533 66.8
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.8e-183 646.7 432 77.3
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.7e-179 632.9 354 88.7
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 1.4e-172 610.5 643 51.9
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.4e-156 557.4 411 72.5
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 4.0e-151 539.3 315 87.0
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 3.9e-138 496.1 296 84.8
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 4.4e-126 456.1 271 85.2
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 2.3e-114 417.2 513 44.8
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 8.4e-101 372.1 201 90.5
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 1.1e-84 318.5 231 70.6
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.4e-84 318.2 183 85.8
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.5e-81 308.1 623 36.3
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.4e-79 300.8 240 67.1
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 3.4e-78 297.0 163 88.3
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 6.7e-74 282.7 163 85.3
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 1.7e-53 214.9 226 55.8
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 9.2e-47 192.6 103 92.2
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 1.3e-45 188.7 288 43.4
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 2.9e-40 171.0 103 80.6
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 4.9e-40 170.2 104 77.9
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.1e-39 169.1 86 89.5
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 8.6e-37 159.5 90 87.8
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 8.6e-37 159.5 158 58.9
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 8.9e-34 149.4 123 65.0
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 8.3e-32 142.9 91 80.2
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 1.4e-31 142.1 91 79.1
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.9e-31 141.7 74 87.8
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 4.3e-28 130.6 99 70.7
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 8.6e-21 106.3 53 98.1
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 1.5e-17 95.5 69 66.7
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 5.8e-17 93.6 63 69.8
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.3e-16 92.4 51 84.3
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 2.9e-16 91.3 60 75.0
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 3.8e-16 90.9 51 82.4
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 1.1e-12 79.3 116 45.7
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 1.6e-11 75.5 56 62.5
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 2.0e-09 68.6 43 74.4


User provided reference genes

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