Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018434 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 3.9e-30 134.0 63 100.0
CSS0008706 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 9.0e-27 122.9 59 98.3
CSS0015538 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 5.8e-26 120.2 59 94.9
CSS0022322 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 3.8e-25 117.5 59 93.2
CSS0005745 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 6.5e-25 116.7 59 91.5
Dinv23194 Davidia involucrata HOM05D000050 ORTHO05D006639 3.5e-23 110.9 59 86.4
Dinv11213 Davidia involucrata HOM05D000050 ORTHO05D006639 6.0e-23 110.2 59 84.7
Rhsim12G0178500 Rhododendron simsii HOM05D000050 ORTHO05D006639 3.0e-22 107.8 61 86.9
Actinidia08894 Actinidia chinensis HOM05D000050 ORTHO05D006639 1.5e-21 105.5 59 81.4
Lj5A91T48 Lonicera japonica HOM05D000050 ORTHO05D006639 5.7e-21 103.6 59 78.0
vmacro16743 Vaccinium macrocarpon HOM05D000050 ORTHO05D006639 9.6e-21 102.8 62 82.3
EL10Ac5g11339 Beta vulgaris HOM05D000050 ORTHO05D006639 2.1e-20 101.7 59 78.0
Lsat_1_v5_gn_4_83541 Lactuca sativa HOM05D000050 ORTHO05D006639 2.1e-20 101.7 59 78.0
Lj9A483T63 Lonicera japonica HOM05D000050 ORTHO05D006639 2.1e-20 101.7 59 78.0
Hund02480 Selenicereus undatus HOM05D000050 ORTHO05D006639 2.1e-20 101.7 59 78.0
AUR62029535 Chenopodium quinoa HOM05D000050 ORTHO05D006639 4.8e-20 100.5 59 74.6
AUR62034792 Chenopodium quinoa HOM05D000050 ORTHO05D006639 4.8e-20 100.5 59 74.6
Cc04_g09520 Coffea canephora HOM05D000050 ORTHO05D006639 4.8e-20 100.5 59 78.0
Sc10g0010690 Simmondsia chinensis HOM05D000050 ORTHO05D006639 4.8e-20 100.5 59 78.0
Sc10g0010780 Simmondsia chinensis HOM05D000050 ORTHO05D006639 4.8e-20 100.5 59 78.0
Ah.11g046520 Amaranthus hybridus HOM05D000050 ORTHO05D006639 6.3e-20 100.1 59 74.6
DCAR_016360 Daucus carota HOM05D000050 ORTHO05D006639 8.2e-20 99.8 60 80.0
PGR044G0139 Punica granatum HOM05D000050 ORTHO05D006639 1.1e-19 99.4 62 71.0
THA.LOC104825033 Tarenaya hassleriana HOM05D000050 ORTHO05D006639 1.1e-19 99.4 59 72.9
ECA232G2135 Erigeron canadensis HOM05D000050 ORTHO05D006639 1.4e-19 99.0 59 76.3
Thhalv10014747m.g Eutrema salsugineum HOM05D000050 ORTHO05D006639 1.8e-19 98.6 59 71.2
MELO3C026177.2 Cucumis melo HOM05D000050 ORTHO05D006639 2.4e-19 98.2 59 72.9
Eucgr.K02668 Eucalyptus grandis HOM05D000050 ORTHO05D006639 3.1e-19 97.8 62 67.7
ClCG06G018200 Citrullus lanatus HOM05D000050 ORTHO05D006639 5.3e-19 97.1 59 72.9
Carub.0008s1086 Capsella rubella HOM05D000050 ORTHO05D006639 6.9e-19 96.7 59 67.8
Oeu058110.1 Olea europaea HOM05D000050 ORTHO05D006639 6.9e-19 96.7 60 76.7
TWI14G0127 Tripterygium wilfordii HOM05D000050 ORTHO05D006639 6.9e-19 96.7 59 72.9
Nitab4.5_0000033g0120 Nicotiana tabacum HOM05D000050 ORTHO05D006639 9.0e-19 96.3 58 77.6
CAN.G65.109 Capsicum annuum HOM05D000050 ORTHO05D006639 1.2e-18 95.9 58 75.9
CsaV3_1G000230 Cucumis sativus L. HOM05D000050 ORTHO05D006639 1.2e-18 95.9 59 71.2
HanXRQChr09g0273641 Helianthus annuus HOM05D000050 ORTHO05D006639 1.2e-18 95.9 62 71.0
Potri.015G103400 Populus trichocarpa HOM05D000050 ORTHO05D006639 1.2e-18 95.9 59 71.2
MSTRG.4623 Avicennia marina HOM05D000050 ORTHO05D006639 1.5e-18 95.5 60 73.3
CiPaw.11G002500 Carya illinoinensis HOM05D000050 ORTHO05D006639 1.5e-18 95.5 59 71.2
Gohir.D12G194800 Gossypium hirsutum HOM05D000050 ORTHO05D006639 1.5e-18 95.5 59 71.2
HanXRQChr16g0498781 Helianthus annuus HOM05D000050 ORTHO05D006639 1.5e-18 95.5 62 69.4
Peaxi162Scf01064g00237 Petunia axillaris HOM05D000050 ORTHO05D006639 1.5e-18 95.5 58 77.6
Potri.012G104100 Populus trichocarpa HOM05D000050 ORTHO05D006639 1.5e-18 95.5 59 69.5
SalBow1G8711 Salvia bowleyana HOM05D000050 ORTHO05D006639 1.5e-18 95.5 60 76.7
Sabra15G0122700 Salix brachista HOM05D000050 ORTHO05D006639 2.0e-18 95.1 59 71.2
Migut.O00353 Erythranthe guttata HOM05D000050 ORTHO05D006639 2.6e-18 94.7 60 75.0
Oeu043134.1 Olea europaea HOM05D000050 ORTHO05D006639 2.6e-18 94.7 60 75.0
Thecc.03G136900 Theobroma cacao HOM05D000050 ORTHO05D006639 2.6e-18 94.7 59 69.5
Aa31LG3G7350 Aethionema arabicum HOM05D000050 ORTHO05D006639 3.4e-18 94.4 58 69.0
BcaC01g06058 Brassica carinata HOM05D000050 ORTHO05D006639 3.4e-18 94.4 59 69.5
A03p16530 Brassica napus HOM05D000050 ORTHO05D006639 3.4e-18 94.4 59 69.5
C03p19460 Brassica napus HOM05D000050 ORTHO05D006639 3.4e-18 94.4 59 69.5
BolC3t14327H Brassica oleracea HOM05D000050 ORTHO05D006639 3.4e-18 94.4 59 69.5
BraA03t10940Z Brassica rapa HOM05D000050 ORTHO05D006639 3.4e-18 94.4 59 69.5
Cpa.g.sc4.125 Carica papaya HOM05D000050 ORTHO05D006639 3.4e-18 94.4 59 69.5
COL.COLO4_16678 Corchorus olitorius HOM05D000050 ORTHO05D006639 3.4e-18 94.4 59 71.2
Duzib068G1461 Durio zibethinus HOM05D000050 ORTHO05D006639 3.4e-18 94.4 59 69.5
CiPaw.12G001900 Carya illinoinensis HOM05D000050 ORTHO05D006639 4.5e-18 94.0 59 71.2
Solyc06g072570.4 Solanum lycopersicum HOM05D000050 ORTHO05D006639 4.5e-18 94.0 58 74.1
PGSC0003DMG400027041 Solanum tuberosum HOM05D000050 ORTHO05D006639 4.5e-18 94.0 58 74.1
AL8G25050 Arabidopsis lyrata HOM05D000050 ORTHO05D006639 5.9e-18 93.6 59 67.8
Ca_16073_v3 Cicer arietinum L. HOM05D000050 ORTHO05D006639 5.9e-18 93.6 59 71.2
Haze_07125 Corylus avellana HOM05D000050 ORTHO05D006639 5.9e-18 93.6 59 71.2
Gohir.A12G192700 Gossypium hirsutum HOM05D000050 ORTHO05D006639 5.9e-18 93.6 59 69.5
Gorai.008G209500 Gossypium raimondii HOM05D000050 ORTHO05D006639 5.9e-18 93.6 59 69.5
AT5G50870 Arabidopsis thaliana HOM05D000050 ORTHO05D006639 7.6e-18 93.2 59 66.1
Ciclev10032815m.g Citrus clementina HOM05D000050 ORTHO05D006639 7.6e-18 93.2 59 67.8
Duzib084G0345 Durio zibethinus HOM05D000050 ORTHO05D006639 7.6e-18 93.2 59 69.5
Sp6g13010 Schrenkiella parvula HOM05D000050 ORTHO05D006639 1.0e-17 92.8 59 67.8
Manes.06G124300 Manihot esculenta HOM05D000050 ORTHO05D006639 1.3e-17 92.4 59 67.8
Manes.14G047100 Manihot esculenta HOM05D000050 ORTHO05D006639 1.3e-17 92.4 59 67.8
CARHR257380 Cardamine hirsuta HOM05D000050 ORTHO05D006639 1.7e-17 92.0 59 66.1
Duzib205G0344 Durio zibethinus HOM05D000050 ORTHO05D006639 1.7e-17 92.0 59 67.8
FAN08G2874 Fragaria x ananassa HOM05D000050 ORTHO05D006639 2.2e-17 91.7 63 68.3
FAN13G1099 Fragaria x ananassa HOM05D000050 ORTHO05D006639 2.2e-17 91.7 63 68.3
Atru.chr6.1890 Acer truncatum HOM05D000050 ORTHO05D006639 2.9e-17 91.3 59 66.1
FvH4_5g09050 Fragaria vesca HOM05D000050 ORTHO05D006639 2.9e-17 91.3 63 68.3
FAN04G2695 Fragaria x ananassa HOM05D000050 ORTHO05D006639 2.9e-17 91.3 63 68.3
FAN18G0611 Fragaria x ananassa HOM05D000050 ORTHO05D006639 2.9e-17 91.3 63 68.3
Prupe.5G145200 Prunus persica HOM05D000050 ORTHO05D006639 3.8e-17 90.9 63 68.3
CDE02G3954 Ceratophyllum demersum HOM05D000050 ORTHO05D006639 5.0e-17 90.5 59 64.4
Sed0004769 Sechium edule HOM05D000050 ORTHO05D006639 5.0e-17 90.5 59 71.2
arahy.Tifrunner.gnm1.ann1.Q7T1PG Arachis hypogaea HOM05D000050 ORTHO05D006639 6.5e-17 90.1 59 69.5
arahy.Tifrunner.gnm1.ann1.Z2A8SP Arachis hypogaea HOM05D000050 ORTHO05D006639 6.5e-17 90.1 59 69.5
CDE09G0996 Ceratophyllum demersum HOM05D000050 ORTHO05D006639 6.5e-17 90.1 59 64.4
Phvul.009G163400 Phaseolus vulgaris HOM05D000050 ORTHO05D006639 6.5e-17 90.1 59 67.8
Lalb_Chr11g0069331 Lupinus albus HOM05D000050 ORTHO05D006639 8.5e-17 89.7 59 66.1
Lalb_Chr23g0272971 Lupinus albus HOM05D000050 ORTHO05D006639 8.5e-17 89.7 59 67.8
RcHm_v2.0_Chr7g0189161 Rosa chinensis HOM05D000050 ORTHO05D006639 1.1e-16 89.4 63 68.3
TAR622G0592 Trochodendron aralioides HOM05D000050 ORTHO05D006639 1.1e-16 89.4 59 67.8
Nn3g16340 Nelumbo nucifera HOM05D000050 ORTHO05D006639 1.4e-16 89.0 59 67.8
Nitab4.5_0006857g0010 Nicotiana tabacum HOM05D000050 ORTHO05D006639 2.5e-16 88.2 61 72.1
Glyma.06G166300 Glycine max HOM05D000050 ORTHO05D006639 3.2e-16 87.8 59 67.8
TPR.G21583 Trifolium pratense HOM05D000050 ORTHO05D006639 3.2e-16 87.8 59 69.5
Aqoxy3G01724 Aquilegia oxysepala HOM05D000050 ORTHO05D006639 4.2e-16 87.4 60 66.7
CANSAT80G2273 Cannabis sativa HOM05D000050 ORTHO05D006639 5.5e-16 87.0 60 68.3
MD06G1134200 Malus domestica HOM05D000050 ORTHO05D006639 5.5e-16 87.0 63 65.1
Glyma.04G199200 Glycine max HOM05D000050 ORTHO05D006639 7.2e-16 86.7 59 67.8
unitig_22.g5343 Utricularia gibba HOM05D000050 ORTHO05D006639 7.2e-16 86.7 59 69.5
MD14G1150500 Malus domestica HOM05D000050 ORTHO05D006639 9.3e-16 86.3 63 65.1
Psat5g053600 Pisum sativum HOM05D000050 ORTHO05D006639 1.2e-15 85.9 59 64.4
Lj1g0020356 Lotus japonicus HOM05D000050 ORTHO05D006639 2.1e-15 85.1 60 68.3
PSO017G1401 Papaver somniferum HOM05D000050 ORTHO05D006639 2.1e-15 85.1 59 64.4
PSO478G4241 Papaver somniferum HOM05D000050 ORTHO05D006639 2.1e-15 85.1 59 64.4
Medtr3g098780 Medicago truncatula HOM05D000050 ORTHO05D006639 2.7e-15 84.7 59 66.1
CSS0046810 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 3.6e-15 84.3 59 72.9
VMungo1309G1070 Vigna mungo HOM05D000050 ORTHO05D006639 3.6e-15 84.3 59 64.4
ATR0582G280 Amborella trichopoda HOM05D000050 ORTHO05D006639 7.9e-15 83.2 62 59.7
Os01g0925800 Oryza sativa ssp. japonica HOM05D000050 ORTHO05D006639 6.7e-14 80.1 60 65.0
Zm00001eb363890 Zea mays HOM05D000050 ORTHO05D006639 8.7e-14 79.7 60 65.0
Gohir.D11G040950 Gossypium hirsutum HOM05D000050 ORTHO05D006639 4.3e-13 77.4 62 56.5
Gohir.A11G037700 Gossypium hirsutum HOM05D000050 ORTHO05D006639 5.7e-13 77.0 62 56.5
HPP92_025291 Vanilla planifolia HOM05D000050 ORTHO05D006639 2.2e-12 75.1 65 60.0
Gorai.007G044100 Gossypium raimondii HOM05D000050 ORTHO05D006639 2.8e-12 74.7 57 57.9
HPP92_003184 Vanilla planifolia HOM05D000050 ORTHO05D006639 2.8e-12 74.7 61 60.7
AagrBONN_evm.TU.Sc2ySwM_344.919 Anthoceros agrestis HOM05D000050 ORTHO05D006639 3.7e-12 74.3 62 50.0
HanXRQChr06g0175201 Helianthus annuus HOM05D000050 ORTHO05D006639 1.1e-11 72.8 59 50.8
SMO111G0206 Selaginella moellendorffii HOM05D000050 ORTHO05D006639 1.1e-11 72.8 62 51.6
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 1.4e-11 72.4 61 54.1
Mapoly0127s0049 Marchantia polymorpha HOM05D000050 ORTHO05D006639 1.8e-11 72.0 62 51.6
SEGI_04180 Sequoiadendron giganteum HOM05D000050 ORTHO05D006639 3.1e-11 71.2 63 57.1
Pp3c24_12210 Physcomitrium patens HOM05D000050 ORTHO05D006639 1.2e-10 69.3 62 51.6
Hma1.2p1_1524F.1_g288830 Hydrangea macrophylla HOM05D000050 ORTHO05D006639 2.6e-10 68.2 61 57.4
SEGI_30300 Sequoiadendron giganteum HOM05D000050 ORTHO05D006639 5.0e-09 63.9 60 51.7
Lsat_1_v5_gn_3_31580 Lactuca sativa HOM05D000050 ORTHO05D006639 8.5e-09 63.2 59 44.1
Cre01.g046850 Chlamydomonas reinhardtii HOM05D000050 ORTHO05D006639 1.9e-08 62.0 57 49.1
Sp3g11760 Schrenkiella parvula HOM05D000050 ORTHO05D009008 9.4e-08 59.7 55 54.5
Aa31LG8G750 Aethionema arabicum HOM05D000050 ORTHO05D009008 1.2e-07 59.3 57 54.4
ECA246G4432 Erigeron canadensis HOM05D000050 ORTHO05D006639 1.2e-07 59.3 57 43.9
HanXRQChr04g0097641 Helianthus annuus HOM05D000050 ORTHO05D009008 2.1e-07 58.5 55 52.7
MELO3C014684.2 Cucumis melo HOM05D000050 ORTHO05D009008 2.7e-07 58.2 55 54.5
CsaV3_4G023310 Cucumis sativus L. HOM05D000050 ORTHO05D009008 2.7e-07 58.2 55 54.5
ClCG02G024020 Citrullus lanatus HOM05D000050 ORTHO05D009008 3.6e-07 57.8 55 54.5
MCO05G358 Micromonas commoda HOM05D000050 ORTHO05D006639 3.6e-07 57.8 57 47.4
AL3G25460 Arabidopsis lyrata HOM05D000050 ORTHO05D009008 4.6e-07 57.4 55 52.7
Carub.0003s1303 Capsella rubella HOM05D000050 ORTHO05D009008 4.6e-07 57.4 55 52.7
GSVIVG01025431001 Vitis vinifera HOM05D000050 ORTHO05D009008 4.6e-07 57.4 55 50.9
AT3G13550 Arabidopsis thaliana HOM05D000050 ORTHO05D009008 6.1e-07 57.0 55 52.7
THA.LOC104815666 Tarenaya hassleriana HOM05D000050 ORTHO05D009008 6.1e-07 57.0 55 52.7
Actinidia30428 Actinidia chinensis HOM05D000050 ORTHO05D009008 7.9e-07 56.6 55 50.9
CARHR088220 Cardamine hirsuta HOM05D000050 ORTHO05D009008 7.9e-07 56.6 55 50.9
Os07g0577400 Oryza sativa ssp. japonica HOM05D000050 ORTHO05D009008 7.9e-07 56.6 54 51.9
SGA_v2.0_scaffold3G01662 Striga asiatica HOM05D000050 ORTHO05D009008 7.9e-07 56.6 55 52.7
BcaB06g25456 Brassica carinata HOM05D000050 ORTHO05D009008 1.0e-06 56.2 55 50.9
BcaC05g29174 Brassica carinata HOM05D000050 ORTHO05D009008 1.0e-06 56.2 55 50.9
A05p35890 Brassica napus HOM05D000050 ORTHO05D009008 1.0e-06 56.2 55 50.9
C05p54320 Brassica napus HOM05D000050 ORTHO05D009008 1.0e-06 56.2 55 50.9
BolC5t34100H Brassica oleracea HOM05D000050 ORTHO05D009008 1.0e-06 56.2 55 50.9
BraA05t22395Z Brassica rapa HOM05D000050 ORTHO05D009008 1.0e-06 56.2 55 50.9
Hma1.2p1_0843F.1_g227300 Hydrangea macrophylla HOM05D000050 ORTHO05D009008 1.0e-06 56.2 55 50.9
Manes.15G106700 Manihot esculenta HOM05D000050 ORTHO05D009008 1.0e-06 56.2 55 49.1
COL.COLO4_35027 Corchorus olitorius HOM05D000050 ORTHO05D009008 1.4e-06 55.8 55 49.1
Lsat_1_v5_gn_6_51960 Lactuca sativa HOM05D000050 ORTHO05D009008 1.4e-06 55.8 55 49.1
PRCOL_00005472 Prasinoderma coloniale HOM05D000050 ORTHO05D006639 1.4e-06 55.8 60 45.0
Zm00001eb325380 Zea mays HOM05D000050 ORTHO05D009008 1.4e-06 55.8 54 51.9
ECA233G3676 Erigeron canadensis HOM05D000764 ORTHO05D002006 1.8e-06 55.5 54 50.0
QL01p008453 Quercus lobata HOM05D000050 ORTHO05D009008 1.8e-06 55.5 55 49.1
Gohir.A06G103100 Gossypium hirsutum HOM05D000050 ORTHO05D009008 2.3e-06 55.1 55 49.1
Gohir.D06G111300 Gossypium hirsutum HOM05D000050 ORTHO05D009008 2.3e-06 55.1 55 49.1
Gorai.010G126700 Gossypium raimondii HOM05D000050 ORTHO05D009008 2.3e-06 55.1 55 49.1
CSS0049660 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D009008 3.0e-06 54.7 55 49.1
CiPaw.14G134900 Carya illinoinensis HOM05D000050 ORTHO05D009008 3.0e-06 54.7 55 49.1
Cfa024518 Carpinus fangiana HOM05D000050 ORTHO05D006639 3.9e-06 54.3 57 45.6
Nn2g15802 Nelumbo nucifera HOM05D000050 ORTHO05D009008 3.9e-06 54.3 54 51.9
Thecc.09G208900 Theobroma cacao HOM05D000050 ORTHO05D009008 3.9e-06 54.3 55 49.1
Sed0004115 Sechium edule HOM05D000050 ORTHO05D009008 5.1e-06 53.9 55 49.1
SGA_v2.0_scaffold6G03284 Striga asiatica HOM05D000050 ORTHO05D009008 5.1e-06 53.9 54 51.9
Cc05_g01450 Coffea canephora HOM05D000050 ORTHO05D009008 6.7e-06 53.5 55 47.3
Migut.N00568 Erythranthe guttata HOM05D000050 ORTHO05D009008 6.7e-06 53.5 55 49.1
Peaxi162Scf01111g00113 Petunia axillaris HOM05D000050 ORTHO05D009008 6.7e-06 53.5 55 47.3
TWI60G0978 Tripterygium wilfordii HOM05D000050 ORTHO05D009008 6.7e-06 53.5 55 49.1
CANSAT21G2507 Cannabis sativa HOM05D000050 ORTHO05D009008 8.8e-06 53.1 55 47.3
CDE07G0412 Ceratophyllum demersum HOM05D000050 ORTHO05D009008 8.8e-06 53.1 54 50.0
FAN21G3692 Fragaria x ananassa HOM05D000050 ORTHO05D009008 8.8e-06 53.1 54 48.1
Potri.001G089300 Populus trichocarpa HOM05D000050 ORTHO05D009008 8.8e-06 53.1 55 45.5
PGR102G0782 Punica granatum HOM05D000050 ORTHO05D009008 8.8e-06 53.1 54 50.0
TWI34G1443 Tripterygium wilfordii HOM05D000050 ORTHO05D009008 8.8e-06 53.1 53 50.9


User provided reference genes

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