Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 4.0e-232 807.7 412 100.0
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 4.7e-209 731.1 412 88.3
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.4e-205 718.8 412 87.9
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 4.1e-205 718.0 411 88.1
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.8e-200 702.6 415 86.3
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 7.6e-199 697.2 412 82.3
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 2.9e-198 695.3 410 84.4
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 1.9e-197 692.6 413 84.7
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 9.3e-197 690.3 414 83.1
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 1.2e-196 689.9 412 81.8
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 4.6e-196 688.0 414 82.9
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 7.8e-196 687.2 412 82.0
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 2.3e-195 685.6 412 81.6
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 3.0e-195 685.3 412 82.3
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 3.0e-195 685.3 412 82.8
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 5.1e-195 684.5 412 82.0
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 6.6e-195 684.1 479 75.2
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 8.7e-195 683.7 412 81.8
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 1.5e-194 682.9 410 82.0
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 1.9e-194 682.6 413 81.1
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 4.3e-194 681.4 412 81.1
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 4.3e-194 681.4 375 90.7
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 2.1e-193 679.1 410 82.7
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 2.8e-193 678.7 412 81.8
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 3.6e-193 678.3 412 81.8
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 1.4e-192 676.4 412 79.6
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.8e-192 676.0 412 79.4
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.0e-192 674.9 412 79.6
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 5.3e-192 674.5 412 79.1
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 6.9e-192 674.1 412 79.1
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.2e-191 673.3 412 79.1
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 2.6e-191 672.2 412 81.1
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 4.4e-191 671.4 413 81.4
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 4.4e-191 671.4 411 81.0
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 5.8e-191 671.0 411 79.8
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 5.8e-191 671.0 413 79.7
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 4.9e-190 667.9 416 79.8
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 4.9e-190 667.9 412 78.9
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 6.4e-190 667.5 416 79.8
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 1.9e-189 666.0 410 79.0
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 2.4e-189 665.6 413 79.7
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 5.4e-189 664.5 411 82.2
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 9.3e-189 663.7 412 79.9
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 1.2e-188 663.3 414 79.5
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 1.2e-188 663.3 417 79.4
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 2.1e-188 662.5 413 78.9
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 2.7e-188 662.1 416 78.6
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 4.6e-188 661.4 414 79.5
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 4.6e-188 661.4 413 79.2
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.0e-187 660.2 411 79.1
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 1.0e-187 660.2 413 80.9
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.7e-187 659.4 412 78.6
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 3.0e-187 658.7 414 78.7
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 5.1e-187 657.9 508 69.7
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 8.7e-187 657.1 412 78.6
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 1.5e-186 656.4 413 78.9
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.5e-186 656.4 412 78.4
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 4.3e-186 654.8 409 78.7
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 7.3e-186 654.1 412 79.1
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.3e-185 653.3 415 79.0
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 1.3e-185 653.3 413 78.5
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 2.1e-185 652.5 455 73.8
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 2.1e-185 652.5 412 78.9
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 2.8e-185 652.1 415 78.8
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 2.4e-184 649.0 445 74.4
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 3.1e-184 648.7 412 77.7
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 3.1e-184 648.7 409 78.5
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 9.9e-183 643.7 415 77.3
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.2e-182 642.5 412 76.7
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 2.9e-182 642.1 410 77.6
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 1.1e-181 640.2 408 76.7
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 1.4e-181 639.8 415 77.6
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 1.4e-181 639.8 414 76.8
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 3.5e-180 635.2 413 76.3
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 6.7e-179 630.9 413 74.3
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 6.7e-179 630.9 417 76.0
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 8.7e-179 630.6 412 75.7
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.9e-178 629.4 413 75.1
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 2.5e-178 629.0 410 76.8
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.3e-178 628.6 413 74.1
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 7.4e-178 627.5 413 75.3
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 9.6e-178 627.1 414 74.6
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.3e-177 626.7 413 74.8
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 2.1e-177 625.9 417 75.8
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 2.1e-177 625.9 413 74.1
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.8e-177 625.5 413 74.8
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.7e-177 625.2 413 73.8
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 6.2e-177 624.4 413 74.1
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 8.1e-177 624.0 412 75.5
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.8e-176 622.9 412 73.5
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 1.8e-176 622.9 414 74.6
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 3.1e-176 622.1 410 74.6
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 3.1e-176 622.1 412 73.5
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 4.0e-176 621.7 414 74.2
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 5.3e-176 621.3 410 73.9
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 6.9e-176 620.9 413 74.3
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 6.9e-176 620.9 410 74.6
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 1.2e-175 620.2 412 74.3
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 2.6e-175 619.0 410 74.9
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.0e-174 617.1 409 73.8
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 1.0e-174 617.1 410 72.9
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 1.3e-174 616.7 410 72.9
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 1.3e-174 616.7 410 72.9
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 1.7e-174 616.3 410 72.9
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.2e-174 615.9 412 74.3
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 2.9e-174 615.5 410 72.7
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.6e-172 609.8 410 73.7
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.1e-172 609.4 417 73.4
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 6.0e-172 607.8 410 73.7
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 7.4e-170 600.9 403 75.7
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 3.7e-169 598.6 413 70.9
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 5.3e-168 594.7 420 73.1
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 5.8e-167 591.3 466 65.7
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.2e-156 557.0 418 66.7
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 4.6e-156 555.1 429 64.3
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 1.5e-154 550.1 350 76.9
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 4.5e-151 538.5 409 63.8
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 3.6e-148 528.9 306 84.3
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.0e-146 523.1 348 77.6
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 2.9e-142 509.2 410 61.0
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 6.5e-142 508.1 409 59.4
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 1.2e-140 503.8 329 74.8
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 1.2e-140 503.8 332 74.7
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 2.7e-132 476.1 409 58.4
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 1.8e-131 473.4 419 58.9
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.0e-131 472.6 334 71.3
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 6.3e-129 464.9 418 58.4
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 5.9e-127 458.4 418 57.4
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.3e-110 403.3 234 82.5
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 2.0e-106 390.2 243 77.0
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 1.4e-83 314.3 431 42.0
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 5.4e-80 302.4 181 80.7
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 2.2e-73 280.4 393 43.0
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 5.1e-70 269.2 233 59.7
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 7.1e-64 248.8 329 43.2
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.2e-57 227.3 191 63.4
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 3.9e-54 216.5 256 53.5
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 6.1e-47 192.6 113 84.1
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 2.1e-39 167.5 219 43.4
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 2.7e-39 167.2 152 53.9
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 1.2e-31 141.7 80 80.0
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 4.7e-31 139.8 107 67.3
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 2.6e-26 124.0 84 69.0
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 4.5e-26 123.2 184 46.7
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.3e-25 121.7 90 67.8
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 1.2e-23 115.2 88 69.3
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 1.2e-23 115.2 88 69.3
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.0e-22 112.1 83 67.5
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 5.2e-22 109.8 88 68.2
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 8.8e-22 109.0 74 70.3
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 8.8e-22 109.0 74 70.3
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 5.7e-21 106.3 74 68.9
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.2e-18 98.6 81 59.3
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 2.0e-18 97.8 73 64.4
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 1.9e-16 91.3 66 65.2
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 5.2e-14 83.2 59 67.8
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 1.2e-13 82.0 65 60.0
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 1.8e-11 74.7 86 52.3
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 2.4e-11 74.3 112 42.9
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 3.1e-11 73.9 112 42.0
A09p54850 Brassica napus HOM05D004491 ORTHO05D102086 4.7e-07 60.1 124 36.3


User provided reference genes

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