Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 1.7e-155 553.1 399 100.0
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 2.0e-87 327.0 409 57.5
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 1.2e-79 301.2 400 71.5
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 1.8e-72 277.3 431 61.5
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 9.0e-72 275.0 413 50.4
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 3.1e-56 223.4 413 43.3
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 1.9e-53 214.2 437 41.2
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 4.2e-53 213.0 405 46.7
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 2.3e-51 207.2 400 38.2
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 1.5e-50 204.5 415 40.2
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 4.8e-49 199.5 440 43.2
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 6.3e-49 199.1 424 41.5
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 6.9e-48 195.7 439 39.2
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 1.7e-46 191.0 440 39.5
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 3.9e-43 179.9 420 39.5
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 3.9e-43 179.9 426 39.9
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 5.1e-43 179.5 411 45.0
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 6.7e-43 179.1 427 34.7
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 1.4e-40 171.4 403 34.7
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 3.1e-40 170.2 417 36.5
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 5.3e-40 169.5 428 36.2
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 2.0e-39 167.5 413 38.0
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 5.0e-38 162.9 432 37.0
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 5.0e-38 162.9 408 39.5
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 2.5e-37 160.6 415 39.5
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 9.4e-37 158.7 411 39.2
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 2.1e-36 157.5 457 31.5
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 7.9e-36 155.6 407 37.1
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 2.6e-34 150.6 434 37.8
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 3.3e-34 150.2 430 43.7
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 7.4e-34 149.1 410 32.9
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 6.3e-33 146.0 416 38.0
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.4e-32 144.8 407 32.2
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 2.4e-32 144.1 407 31.9
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 5.3e-32 142.9 430 38.6
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 7.0e-32 142.5 440 30.2
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 2.0e-31 141.0 405 33.1
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 2.0e-31 141.0 418 38.8
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 4.5e-31 139.8 414 39.1
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 1.7e-30 137.9 436 36.7
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 2.2e-30 137.5 430 31.9
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 2.9e-30 137.1 430 30.0
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 3.8e-30 136.7 412 34.0
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 8.5e-30 135.6 402 32.6
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 1.1e-29 135.2 421 34.4
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 1.1e-29 135.2 399 32.8
Dinv44865 Davidia involucrata HOM05D006001 ORTHO05D006714 1.9e-29 134.4 339 43.7
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 2.7e-28 130.6 305 35.1
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 4.7e-28 129.8 410 49.0
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.4e-27 128.3 379 34.8
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 2.3e-27 127.5 398 32.4
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 5.2e-27 126.3 220 49.5
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 6.7e-27 125.9 397 31.7
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 6.7e-27 125.9 393 32.1
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 2.8e-25 120.6 397 33.0
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 1.8e-24 117.9 419 32.0
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 2.4e-24 117.5 397 31.7
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 3.1e-24 117.1 399 30.6
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 7.0e-24 115.9 407 31.7
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 7.0e-24 115.9 409 28.6
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 3.5e-23 113.6 406 34.0
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 5.9e-23 112.8 415 36.4
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 1.0e-22 112.1 404 31.7
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 2.2e-22 110.9 407 34.4
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.9e-21 107.8 349 31.8
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 3.2e-21 107.1 400 38.2
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 6.1e-20 102.8 421 28.3
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 8.0e-20 102.4 422 33.4
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 1.4e-19 101.7 405 36.8
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 1.2e-18 98.6 436 29.1
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 4.4e-18 96.7 427 28.6
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 7.5e-18 95.9 431 27.8
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 4.8e-17 93.2 423 27.7
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 8.3e-17 92.4 410 31.0
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 1.6e-15 88.2 414 31.4
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 2.0e-15 87.8 419 28.4
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 3.5e-15 87.0 419 36.0
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 4.5e-15 86.7 400 29.2
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 7.7e-15 85.9 388 33.2
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 2.9e-14 84.0 420 28.8
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 3.8e-14 83.6 427 26.9
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 3.8e-14 83.6 462 31.2
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 3.8e-14 83.6 274 33.2
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 1.1e-13 82.0 410 27.6
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 1.1e-13 82.0 423 27.7
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 1.5e-13 81.6 396 27.5
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 2.5e-13 80.9 435 29.9
ATR0767G016 Amborella trichopoda HOM05D006001 ORTHO05D006714 3.2e-13 80.5 435 33.3
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 3.2e-13 80.5 425 35.5
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 5.5e-13 79.7 142 41.5
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 5.5e-13 79.7 419 27.4
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 7.2e-13 79.3 407 27.0
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 9.5e-13 79.0 414 27.3
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 2.1e-12 77.8 432 37.5
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 3.6e-12 77.0 408 27.0
SHI11237 Sapria himalayana HOM05D006001 ORTHO05D006714 3.6e-12 77.0 200 38.0
CAN.G475.17 Capsicum annuum HOM05D006001 ORTHO05D006714 8.0e-12 75.9 74 52.7
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 1.0e-11 75.5 410 32.0
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 1.0e-11 75.5 133 42.1
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 1.0e-11 75.5 458 26.2
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 4.0e-11 73.6 211 33.6
vmacro17886 Vaccinium macrocarpon HOM05D006001 ORTHO05D006714 4.0e-11 73.6 102 47.1
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 5.2e-11 73.2 417 36.9
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 5.2e-11 73.2 86 52.3
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 8.8e-11 72.4 428 37.6
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 8.8e-11 72.4 137 40.9
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 1.2e-10 72.0 402 27.6
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.2e-10 72.0 398 27.1
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 1.5e-10 71.6 403 28.8
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 2.6e-10 70.9 103 50.5
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 2.6e-10 70.9 416 40.6
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 3.4e-10 70.5 416 25.5
CDE06G2159 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 7.5e-10 69.3 90 46.7
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 9.8e-10 68.9 416 27.9
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 9.8e-10 68.9 127 42.5
HanXRQChr13g0425671 Helianthus annuus HOM05D006001 ORTHO05D006714 1.7e-09 68.2 93 49.5
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 3.1e-08 63.9 413 32.2
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 4.1e-08 63.5 140 41.4
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 5.4e-08 63.2 425 37.9
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 5.4e-08 63.2 89 46.1
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 7.0e-08 62.8 401 25.2
HanXRQChr13g0425801 Helianthus annuus HOM05D006001 ORTHO05D006714 7.0e-08 62.8 80 52.5
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 1.2e-07 62.0 164 34.1
CDE06G2035 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 3.5e-07 60.5 65 50.8
Peaxi162Scf00454g00211 Petunia axillaris HOM05D006001 ORTHO05D006714 7.7e-07 59.3 407 28.3
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 1.0e-06 58.9 113 40.7
PSO144G0019 Papaver somniferum HOM05D006001 ORTHO05D006714 2.9e-06 57.4 167 38.9
CAN.G475.16 Capsicum annuum HOM05D006001 ORTHO05D006714 3.8e-06 57.0 87 40.2
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 3.8e-06 57.0 74 48.6
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 5.0e-06 56.6 127 36.2
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 5.0e-06 56.6 397 26.4
SEGI_29730 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 6.6e-06 56.2 104 36.5


User provided reference genes

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