Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 2.0e-236 822.0 404 100.0
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.3e-139 500.4 455 61.1
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 5.6e-138 495.0 413 61.3
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.2e-137 493.8 408 63.7
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 8.1e-137 491.1 416 62.0
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 8.1e-137 491.1 512 56.2
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.1e-136 490.7 416 62.0
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 5.2e-136 488.4 478 55.6
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.2e-135 487.3 456 58.1
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 3.4e-135 485.7 420 60.5
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 6.6e-131 471.5 406 60.8
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 6.6e-131 471.5 436 59.2
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 1.5e-130 470.3 415 61.2
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 3.3e-130 469.2 406 60.8
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 5.6e-130 468.4 415 59.5
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 1.2e-129 467.2 394 61.9
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 3.1e-128 462.6 406 61.3
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 2.0e-127 459.9 405 60.0
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 4.4e-127 458.8 415 58.1
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.4e-127 458.8 404 59.4
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 5.8e-127 458.4 420 58.8
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.3e-126 457.2 405 59.8
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.7e-126 456.8 407 58.5
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.9e-126 455.3 376 62.0
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.4e-125 453.8 394 60.2
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 7.1e-125 451.4 394 59.9
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.6e-124 450.3 405 59.3
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.7e-124 449.5 400 59.0
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 1.3e-123 447.2 425 58.1
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.3e-123 447.2 400 60.2
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.7e-123 446.8 403 58.6
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 2.3e-123 446.4 394 59.4
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 3.9e-123 445.7 401 57.1
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 6.6e-123 444.9 415 59.3
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 8.7e-123 444.5 411 57.4
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 7.3e-122 441.4 427 58.1
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 8.1e-121 438.0 401 56.6
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 1.2e-119 434.1 381 60.1
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 2.6e-119 433.0 436 56.2
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 4.5e-119 432.2 432 55.1
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.3e-118 430.6 407 55.8
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 2.2e-118 429.9 414 54.6
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 2.9e-118 429.5 414 57.0
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 3.8e-118 429.1 397 56.7
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 4.9e-118 428.7 386 59.6
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 4.9e-118 428.7 420 55.2
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 6.4e-118 428.3 396 58.1
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 6.4e-118 428.3 417 53.2
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 1.9e-117 426.8 397 57.4
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 5.4e-117 425.2 376 58.0
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 2.7e-116 422.9 418 54.8
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 2.7e-116 422.9 404 55.7
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 7.9e-116 421.4 377 57.8
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 7.9e-116 421.4 428 55.1
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 3.9e-115 419.1 377 57.8
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 5.1e-115 418.7 402 55.5
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 1.5e-114 417.2 402 54.2
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 2.5e-114 416.4 404 55.2
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 2.8e-113 412.9 400 55.5
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 3.7e-113 412.5 438 53.4
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 5.3e-112 408.7 413 53.5
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 1.5e-111 407.1 402 55.7
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.0e-111 406.8 406 56.4
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 4.5e-111 405.6 375 57.6
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 7.6e-111 404.8 413 56.2
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 2.9e-110 402.9 391 56.0
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 2.4e-109 399.8 402 54.5
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 3.2e-109 399.4 393 56.2
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 4.2e-109 399.1 415 54.5
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 7.1e-109 398.3 372 55.9
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 9.3e-109 397.9 394 54.8
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 1.6e-108 397.1 375 56.8
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 1.6e-108 397.1 375 56.8
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.7e-108 396.4 422 51.9
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 2.7e-108 396.4 409 52.8
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 3.5e-108 396.0 397 54.9
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 6.0e-108 395.2 415 53.7
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 1.0e-107 394.4 377 56.0
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 1.0e-107 394.4 377 56.0
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.3e-107 393.3 278 67.3
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 3.9e-107 392.5 402 53.2
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.1e-106 391.0 401 53.1
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 1.5e-106 390.6 373 55.2
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 1.9e-106 390.2 402 51.2
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 3.7e-105 386.0 426 50.5
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 4.8e-105 385.6 289 68.2
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 4.8e-105 385.6 406 52.7
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.1e-104 384.4 398 54.0
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 1.1e-104 384.4 306 63.7
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 5.3e-104 382.1 412 51.2
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 5.3e-104 382.1 327 58.7
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.2e-103 380.9 404 52.7
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 2.9e-102 376.3 413 50.1
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 3.8e-102 375.9 406 50.2
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 3.2e-101 372.9 409 51.1
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 7.1e-101 371.7 459 49.7
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 9.3e-101 371.3 406 51.5
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 2.3e-99 366.7 418 50.0
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 1.4e-96 357.5 516 43.4
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.7e-94 350.5 281 61.6
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.6e-92 344.0 425 47.3
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 6.7e-91 338.6 425 46.8
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 1.9e-90 337.0 376 50.3
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 7.4e-90 335.1 407 47.7
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 1.3e-89 334.3 278 62.9
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 1.3e-89 334.3 417 47.2
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.4e-88 330.9 278 62.6
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.4e-88 330.9 278 62.6
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 6.9e-88 328.6 277 62.1
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 6.9e-88 328.6 277 62.1
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 7.2e-85 318.5 392 46.2
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 4.8e-81 305.8 340 53.5
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 2.9e-78 296.6 422 42.2
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.1e-77 294.7 287 54.4
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 1.4e-77 294.3 235 64.7
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 1.8e-72 277.3 332 48.2
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 3.5e-71 273.1 167 79.6
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 7.2e-69 265.4 268 52.2
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 1.8e-67 260.8 327 45.0
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 1.8e-67 260.8 292 47.3
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 1.8e-59 234.2 188 62.8
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.0e-59 233.4 280 46.8
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 2.8e-57 226.9 255 49.4
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 3.5e-55 219.9 203 56.2
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 8.6e-54 215.3 282 42.9
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 3.4e-50 203.4 284 40.8
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 2.2e-49 200.7 288 41.3
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 3.5e-47 193.4 293 43.3
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 8.6e-46 188.7 153 64.1
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 3.6e-44 183.3 145 64.1
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.0e-42 177.6 138 64.5
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 2.2e-41 174.1 250 39.6
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 3.7e-41 173.3 108 75.0
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 2.7e-39 167.2 248 37.9
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 5.0e-38 162.9 217 44.7
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.4e-35 154.8 108 66.7
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 6.8e-35 152.5 100 74.0
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 6.4e-33 146.0 213 43.7
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.4e-32 144.8 176 49.4
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 8.6e-30 135.6 98 65.3
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.6e-28 131.3 185 41.6
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.3e-27 127.5 185 41.1
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.1e-24 118.6 133 50.4
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 1.9e-24 117.9 69 78.3
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 1.3e-22 111.7 78 67.9
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 5.6e-21 106.3 272 29.0
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 1.2e-20 105.1 64 76.6
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.6e-20 104.8 140 42.9
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.8e-20 104.0 63 66.7
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.6e-18 97.4 86 52.3
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 6.4e-17 92.8 182 34.1
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 9.2e-16 89.0 99 50.5
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-13 82.0 48 66.7
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-13 82.0 166 36.7
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.6e-12 78.2 53 67.9
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.1e-12 75.9 53 64.2
Lju170C28T1 Lonicera japonica HOM05D004413 ORTHO05D005199 1.4e-11 75.1 74 59.5
Atru.chr1.1384 Acer truncatum HOM05D004413 ORTHO05D005199 2.0e-10 71.2 94 46.8
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.0e-10 71.2 50 64.0
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 3.8e-09 67.0 80 48.8
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.5e-07 60.5 49 57.1
Aqoxy6G02982 Aquilegia oxysepala HOM05D004413 ORTHO05D077659 6.6e-06 56.2 61 42.6


User provided reference genes

Program Settings