Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 4.9e-188 661.0 339 100.0
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 9.3e-187 656.8 339 96.8
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 7.4e-160 567.4 339 81.1
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 2.1e-154 549.3 339 80.2
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 4.2e-147 525.0 336 76.2
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 1.6e-146 523.1 337 73.6
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.8e-145 519.6 337 74.2
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.2e-144 516.9 337 74.2
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 2.0e-144 516.2 339 75.2
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 2.6e-144 515.8 337 72.7
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 5.7e-144 514.6 339 73.7
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 1.7e-143 513.1 337 71.8
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 1.7e-143 513.1 335 73.4
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.7e-143 513.1 338 74.3
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 2.2e-143 512.7 337 73.9
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 4.8e-143 511.5 337 71.8
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 6.3e-143 511.1 337 72.7
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 1.4e-142 510.0 338 72.8
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.4e-142 510.0 337 73.3
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 1.4e-142 510.0 337 72.1
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 1.8e-142 509.6 330 73.6
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 5.4e-142 508.1 338 72.5
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 9.1e-142 507.3 337 71.2
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 9.1e-142 507.3 338 72.2
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 1.7e-140 503.1 337 70.6
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 2.9e-140 502.3 332 72.3
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 2.9e-140 502.3 330 71.8
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 5.0e-140 501.5 337 71.8
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 2.5e-139 499.2 339 69.6
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 2.1e-138 496.1 330 70.6
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 8.0e-138 494.2 337 70.9
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 8.0e-138 494.2 325 73.5
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 1.0e-137 493.8 341 71.0
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 1.4e-137 493.4 329 71.1
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 1.8e-137 493.0 328 72.6
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 5.2e-137 491.5 330 70.0
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 1.2e-136 490.3 330 70.0
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 3.4e-136 488.8 337 70.0
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 7.5e-136 487.6 339 67.0
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 7.5e-136 487.6 339 67.0
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.3e-135 486.9 329 70.2
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 1.7e-135 486.5 341 70.1
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 2.2e-135 486.1 337 67.1
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 2.8e-135 485.7 331 69.2
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 2.8e-135 485.7 337 67.7
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 4.9e-135 485.0 344 70.1
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.1e-134 483.8 337 68.8
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 1.1e-134 483.8 328 71.6
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.4e-134 482.6 325 71.7
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 4.1e-134 481.9 339 67.8
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 5.4e-134 481.5 325 72.0
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 7.0e-134 481.1 325 71.7
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 7.0e-134 481.1 343 69.1
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.2e-133 480.3 338 68.9
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 3.5e-133 478.8 337 70.6
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 4.5e-133 478.4 322 71.1
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 1.0e-132 477.2 341 69.8
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 3.8e-132 475.3 326 70.6
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 5.0e-132 474.9 332 67.8
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 8.6e-132 474.2 338 66.9
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 8.6e-132 474.2 337 66.2
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.1e-131 473.8 337 66.8
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 1.1e-131 473.8 332 67.8
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 1.5e-131 473.4 332 67.2
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.5e-131 473.4 337 66.2
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 2.5e-131 472.6 332 67.8
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 7.3e-131 471.1 332 67.2
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 4.7e-130 468.4 324 68.2
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 4.0e-129 465.3 321 69.8
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 5.2e-129 464.9 338 67.5
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 6.4e-127 458.0 337 63.5
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 6.4e-127 458.0 341 66.3
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 6.4e-127 458.0 334 68.0
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 7.0e-126 454.5 344 65.1
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 9.2e-126 454.1 337 65.0
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 1.2e-125 453.8 302 73.8
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 1.2e-125 453.8 337 65.3
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 1.6e-125 453.4 354 65.0
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 2.7e-125 452.6 342 65.2
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 1.3e-124 450.3 327 67.3
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 5.6e-123 444.9 329 64.4
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 5.6e-123 444.9 351 60.7
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 7.3e-123 444.5 401 55.4
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 9.5e-123 444.1 327 67.0
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 1.2e-122 443.7 341 62.8
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 2.1e-122 443.0 343 63.8
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 3.6e-122 442.2 340 65.6
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 1.4e-121 440.3 343 61.5
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 7.5e-120 434.5 335 63.9
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.3e-119 433.7 335 63.6
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 1.1e-118 430.6 342 61.4
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 4.1e-118 428.7 273 76.2
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 7.0e-118 427.9 327 64.5
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 1.2e-117 427.2 331 61.9
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 1.3e-116 423.7 340 60.9
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.7e-116 423.3 266 72.2
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 8.1e-114 414.5 577 43.5
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 3.1e-113 412.5 335 60.0
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 4.0e-113 412.1 324 62.0
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 4.4e-112 408.7 276 70.3
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.2e-111 406.4 333 62.5
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 1.1e-110 404.1 300 66.0
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 3.2e-110 402.5 299 64.9
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 1.6e-109 400.2 341 58.9
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 1.0e-108 397.5 279 67.7
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 1.0e-108 397.5 279 67.7
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 3.3e-107 392.5 330 59.1
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 4.0e-105 385.6 276 65.2
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 2.0e-104 383.3 330 57.0
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 7.6e-104 381.3 323 59.1
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.3e-103 380.6 306 62.1
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 6.4e-103 378.3 370 54.3
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 9.2e-102 374.4 238 69.3
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 1.1e-99 367.5 338 55.0
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 2.1e-98 363.2 351 53.8
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 3.6e-98 362.5 255 68.2
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 7.8e-93 344.7 339 49.3
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 1.9e-91 340.1 261 60.2
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 3.2e-86 322.8 197 77.7
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 7.1e-86 321.6 274 54.4
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.7e-85 319.7 204 72.1
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 9.6e-83 311.2 333 46.2
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 9.3e-78 294.7 345 48.4
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 3.9e-76 289.3 176 77.3
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 8.7e-76 288.1 218 69.3
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 5.6e-75 285.4 204 67.2
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 8.4e-71 271.6 305 51.1
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 1.1e-65 254.6 288 41.3
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 3.1e-65 253.1 245 50.6
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 5.0e-55 219.2 256 43.8
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 6.5e-55 218.8 261 44.4
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 2.5e-54 216.9 194 57.2
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 4.7e-53 212.6 166 62.7
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 2.6e-51 206.8 156 60.9
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 1.2e-48 198.0 210 52.9
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 2.9e-47 193.4 286 36.0
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 6.7e-44 182.2 211 46.9
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 2.0e-43 180.6 209 46.4
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.4e-41 174.5 129 63.6
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 9.7e-35 151.8 159 48.4
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 1.3e-34 151.4 295 34.6
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 4.1e-33 146.4 80 82.5
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 1.5e-27 127.9 127 52.0
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 5.4e-25 119.4 98 64.3
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 5.4e-25 119.4 98 64.3
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 5.5e-22 109.4 120 49.2
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 1.0e-20 105.1 181 36.5
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 1.3e-15 88.2 57 73.7
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 3.9e-15 86.7 48 81.2
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 3.3e-14 83.6 71 54.9
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 5.6e-14 82.8 119 42.0
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 2.9e-10 70.5 58 56.9
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 8.3e-10 68.9 46 63.0
CSS0043726 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 3.3e-06 57.0 27 88.9


User provided reference genes

Program Settings