Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 3.9e-128 461.5 230 100.0
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 7.4e-103 377.5 196 96.4
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 2.2e-75 286.2 205 76.1
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 7.2e-74 281.2 216 73.6
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 3.6e-73 278.9 214 72.4
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 6.1e-73 278.1 206 73.8
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 2.2e-70 269.6 201 71.1
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 1.1e-69 267.3 208 69.7
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 1.6e-68 263.5 207 71.5
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 5.9e-68 261.5 176 79.0
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 3.8e-67 258.8 201 69.7
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 3.8e-67 258.8 240 60.8
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 5.0e-67 258.5 200 69.5
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 5.0e-67 258.5 197 70.1
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 1.1e-66 257.3 199 69.3
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 3.3e-66 255.8 208 68.3
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 5.5e-66 255.0 205 68.3
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 7.2e-66 254.6 197 69.0
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 7.2e-66 254.6 199 69.3
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 7.2e-66 254.6 208 67.8
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 1.2e-65 253.8 201 68.7
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.6e-65 253.4 201 70.6
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 2.1e-65 253.1 208 67.8
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.8e-65 252.7 201 68.2
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 6.1e-65 251.5 203 68.0
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 6.1e-65 251.5 200 68.5
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 8.0e-65 251.1 200 68.5
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 8.0e-65 251.1 221 64.7
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 2.3e-64 249.6 201 70.1
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 1.2e-63 247.3 208 65.4
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 4.4e-63 245.4 199 68.3
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 7.5e-63 244.6 204 65.7
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 4.9e-62 241.9 213 63.8
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 6.3e-62 241.5 197 67.0
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 1.1e-61 240.7 191 69.1
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 1.1e-61 240.7 202 67.3
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 1.4e-61 240.4 211 64.9
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 1.4e-61 240.4 203 65.0
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 1.8e-61 240.0 206 64.6
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 2.4e-61 239.6 209 65.1
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 3.1e-61 239.2 218 62.4
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 3.1e-61 239.2 201 64.2
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 3.1e-61 239.2 196 68.4
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 4.1e-61 238.8 203 65.5
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 5.4e-61 238.4 206 64.6
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 9.2e-61 237.7 204 65.7
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 9.2e-61 237.7 195 67.2
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 9.2e-61 237.7 214 64.5
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 9.2e-61 237.7 212 63.7
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 9.2e-61 237.7 209 64.1
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 2.7e-60 236.1 208 64.4
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 5.9e-60 235.0 201 66.2
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 5.0e-59 231.9 210 63.8
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 1.1e-58 230.7 206 64.1
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 2.5e-58 229.6 203 65.0
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 2.5e-58 229.6 214 64.0
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 5.6e-58 228.4 205 64.4
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 9.5e-58 227.6 204 63.2
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 9.5e-58 227.6 208 60.6
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.8e-56 223.4 201 63.7
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 2.3e-56 223.0 196 64.3
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 2.3e-56 223.0 207 61.8
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 1.2e-55 220.7 188 65.4
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 3.4e-55 219.2 198 61.1
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 5.8e-55 218.4 221 57.5
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 9.8e-55 217.6 211 58.3
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 9.8e-55 217.6 200 59.5
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 3.7e-54 215.7 211 59.7
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 4.9e-54 215.3 151 71.5
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 8.3e-54 214.5 206 61.7
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.1e-53 214.2 195 62.6
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.1e-53 214.2 192 61.5
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.1e-53 214.2 192 61.5
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 1.1e-53 214.2 196 61.7
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 1.9e-53 213.4 120 83.3
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.4e-53 213.0 194 60.8
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.1e-53 212.2 161 68.9
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 5.4e-53 211.8 197 56.9
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 7.0e-53 211.5 197 58.9
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 9.2e-53 211.1 116 84.5
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 9.2e-53 211.1 193 60.6
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 1.2e-52 210.7 199 59.3
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 4.6e-52 208.8 211 58.3
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.0e-51 207.6 193 61.7
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 1.0e-51 207.6 183 60.7
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.7e-51 206.8 199 55.3
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 3.9e-51 205.7 211 58.8
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 1.1e-50 204.1 113 81.4
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 1.9e-50 203.4 157 65.6
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 3.3e-50 202.6 112 83.0
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 3.3e-50 202.6 112 83.0
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 3.3e-50 202.6 112 83.0
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 7.3e-50 201.4 208 59.1
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 9.5e-50 201.1 172 65.1
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 9.5e-50 201.1 113 80.5
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 2.1e-49 199.9 223 53.8
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 2.1e-49 199.9 149 66.4
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 4.7e-49 198.7 208 58.7
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 4.7e-49 198.7 147 68.7
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 6.2e-49 198.4 156 66.0
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 6.2e-49 198.4 156 66.0
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 1.8e-48 196.8 175 61.7
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 2.0e-47 193.4 202 54.0
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 2.6e-47 193.0 149 65.1
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 3.4e-47 192.6 161 64.6
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 4.4e-47 192.2 194 54.1
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 5.8e-47 191.8 175 61.1
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 5.8e-47 191.8 149 63.1
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.2e-44 184.1 175 61.1
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 1.7e-43 180.3 185 55.7
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 3.0e-43 179.5 145 63.4
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 8.6e-43 177.9 146 60.3
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 3.3e-42 176.0 158 56.3
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 5.6e-42 175.3 153 64.7
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 3.6e-41 172.6 118 69.5
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.2e-39 167.5 118 67.8
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.3e-38 164.1 128 59.4
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 2.2e-38 163.3 152 55.9
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 2.9e-38 162.9 176 55.1
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 3.7e-38 162.5 113 63.7
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 2.4e-37 159.8 156 55.1
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 3.2e-37 159.5 108 66.7
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 2.1e-28 130.2 113 53.1
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 2.1e-28 130.2 109 55.0
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 6.2e-25 118.6 118 50.8
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 1.4e-21 107.5 125 45.6
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 6.6e-19 98.6 90 55.6
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 9.0e-16 88.2 146 45.9


User provided reference genes

Program Settings