Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017783 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D033874 4.1e-47 191.0 97 100.0
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 7.9e-30 133.7 94 71.3
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 1.0e-29 133.3 94 70.2
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 3.0e-29 131.7 94 70.2
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 3.9e-29 131.3 94 69.1
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 3.9e-29 131.3 94 71.3
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 3.9e-29 131.3 94 70.2
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 8.7e-29 130.2 94 67.0
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 8.7e-29 130.2 94 68.1
Actinidia06777 Actinidia chinensis HOM05D003159 ORTHO05D003780 1.1e-28 129.8 94 70.2
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 1.5e-28 129.4 94 69.1
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 3.3e-28 128.3 94 69.1
Rhsim05G0177800 Rhododendron simsii HOM05D003159 ORTHO05D000029 4.3e-28 127.9 94 68.1
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 4.3e-28 127.9 94 67.0
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 5.6e-28 127.5 94 71.3
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 1.3e-27 126.3 94 64.9
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 1.6e-27 125.9 94 69.1
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 1.6e-27 125.9 94 69.1
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 1.6e-27 125.9 92 65.2
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 2.1e-27 125.6 94 66.0
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 2.8e-27 125.2 94 68.1
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 3.7e-27 124.8 93 66.7
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 3.7e-27 124.8 94 70.2
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 4.8e-27 124.4 94 67.0
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 8.1e-27 123.6 94 62.8
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 8.1e-27 123.6 94 67.0
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 8.1e-27 123.6 92 66.3
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 1.1e-26 123.2 95 64.2
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.4e-26 122.9 94 62.8
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 1.4e-26 122.9 94 64.9
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 1.8e-26 122.5 93 67.7
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 1.8e-26 122.5 93 66.7
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 1.8e-26 122.5 96 62.5
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 1.8e-26 122.5 92 64.1
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 2.4e-26 122.1 94 61.7
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 2.4e-26 122.1 94 63.8
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 2.4e-26 122.1 94 63.8
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 3.1e-26 121.7 94 64.9
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 4.0e-26 121.3 90 68.9
Sabra13G0039800 Salix brachista HOM05D003159 ORTHO05D003780 4.0e-26 121.3 94 66.0
Gohir.A11G250300 Gossypium hirsutum HOM05D003159 ORTHO05D003780 5.3e-26 120.9 94 62.8
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 5.3e-26 120.9 96 62.5
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 5.3e-26 120.9 96 62.5
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 6.9e-26 120.6 94 61.7
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 6.9e-26 120.6 94 61.7
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 1.2e-25 119.8 93 64.5
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 1.5e-25 119.4 94 64.9
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 1.5e-25 119.4 94 66.0
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 1.5e-25 119.4 94 66.0
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 1.5e-25 119.4 94 66.0
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 1.5e-25 119.4 96 61.5
PSO782G2231 Papaver somniferum HOM05D003159 ORTHO05D003780 2.0e-25 119.0 96 62.5
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 2.6e-25 118.6 96 65.6
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 3.4e-25 118.2 94 62.8
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 3.4e-25 118.2 94 62.8
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.4e-25 118.2 94 62.8
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 3.4e-25 118.2 100 61.0
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 4.5e-25 117.9 94 62.8
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 4.5e-25 117.9 94 64.9
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 4.5e-25 117.9 93 65.6
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 5.8e-25 117.5 92 60.9
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 5.8e-25 117.5 96 61.5
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 7.6e-25 117.1 92 60.9
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 7.6e-25 117.1 96 61.5
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 9.9e-25 116.7 94 62.8
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 1.3e-24 116.3 92 60.9
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 1.7e-24 115.9 92 60.9
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 1.7e-24 115.9 96 58.3
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 2.2e-24 115.5 92 58.7
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 2.2e-24 115.5 92 60.9
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 2.2e-24 115.5 92 60.9
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 2.2e-24 115.5 94 62.8
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 2.2e-24 115.5 93 62.4
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 2.2e-24 115.5 96 58.3
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 2.9e-24 115.2 92 59.8
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 3.8e-24 114.8 92 60.9
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 3.8e-24 114.8 94 62.8
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 3.8e-24 114.8 92 60.9
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 8.4e-24 113.6 95 57.9
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 8.4e-24 113.6 95 57.9
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 8.4e-24 113.6 95 57.9
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 8.4e-24 113.6 92 58.7
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 1.1e-23 113.2 92 60.9
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 1.1e-23 113.2 92 60.9
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 1.4e-23 112.8 94 59.6
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 1.9e-23 112.5 93 59.1
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 2.4e-23 112.1 92 56.5
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 2.4e-23 112.1 92 57.6
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 2.4e-23 112.1 92 59.8
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 3.2e-23 111.7 92 58.7
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 4.2e-23 111.3 96 58.3
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 4.2e-23 111.3 94 60.6
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 5.5e-23 110.9 94 61.7
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 7.1e-23 110.5 92 57.6
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 9.3e-23 110.2 93 60.2
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 9.3e-23 110.2 100 52.0
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 1.2e-22 109.8 92 56.5
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 1.2e-22 109.8 94 57.4
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 1.6e-22 109.4 94 60.6
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 2.1e-22 109.0 94 57.4
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 2.1e-22 109.0 94 57.4
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 2.7e-22 108.6 94 59.6
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 3.5e-22 108.2 102 52.0
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 3.5e-22 108.2 92 59.8
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 3.5e-22 108.2 94 62.8
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 1.0e-21 106.7 96 57.3
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 1.3e-21 106.3 94 56.4
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 1.8e-21 105.9 94 56.4
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 1.8e-21 105.9 94 56.4
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 1.8e-21 105.9 92 62.0
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 2.3e-21 105.5 94 55.3
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 3.0e-21 105.1 92 59.8
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 3.9e-21 104.8 96 56.2
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 5.1e-21 104.4 92 58.7
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 6.7e-21 104.0 92 55.4
CDE05G0407 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 6.7e-21 104.0 94 57.4
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 8.7e-21 103.6 93 55.9
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 8.7e-21 103.6 95 58.9
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 1.5e-20 102.8 94 55.3
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 2.5e-20 102.1 94 54.3
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 1.6e-19 99.4 95 56.8
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 3.7e-19 98.2 93 55.9
AagrBONN_evm.TU.Sc2ySwM_368.1733 Anthoceros agrestis HOM05D003159 ORTHO05D003780 3.1e-18 95.1 110 43.6
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 4.0e-18 94.7 110 47.3
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 5.8e-17 90.9 90 60.0
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 1.0e-16 90.1 121 39.7
Nitab4.5_0011494g0040 Nicotiana tabacum HOM05D003159 ORTHO05D033874 8.4e-16 87.0 72 63.9
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 1.4e-15 86.3 112 42.0
Sabra19G0025400 Salix brachista HOM05D003159 ORTHO05D003780 2.5e-15 85.5 66 65.2
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 9.3e-15 83.6 98 41.8
Nn1g02664 Nelumbo nucifera HOM05D003159 ORTHO05D033874 4.6e-14 81.3 54 68.5
Oeu054532.1 Olea europaea HOM05D003159 ORTHO05D003780 4.6e-14 81.3 71 60.6
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 4.6e-14 81.3 94 42.6
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 3.9e-13 78.2 98 42.9
Lalb_Chr06g0166731 Lupinus albus HOM05D003159 ORTHO05D003780 6.7e-13 77.4 97 46.4
Lalb_Chr06g0166701 Lupinus albus HOM05D003159 ORTHO05D003780 1.1e-12 76.6 99 45.5
Peaxi162Scf00135g01116 Petunia axillaris HOM05D003159 ORTHO05D003780 4.3e-12 74.7 58 62.1
Cpa.g.sc162.4 Carica papaya HOM05D003159 ORTHO05D003780 2.2e-11 72.4 56 66.1
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 4.8e-11 71.2 97 40.2
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 1.5e-09 66.2 103 36.9
Zm00001eb284760 Zea mays HOM05D003159 ORTHO05D003780 3.4e-09 65.1 65 49.2
Sabra19G0025600 Salix brachista HOM05D003159 ORTHO05D003780 3.8e-08 61.6 51 64.7
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 4.2e-07 58.2 91 41.8
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 2.1e-06 55.8 55 54.5
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 4.6e-06 54.7 112 32.1


User provided reference genes

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