Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017753 Camellia sinensis var. sinensis HOM05D003597 ORTHO05D004420 1.5e-130 469.5 248 100.0
CSS0035700 Camellia sinensis var. sinensis HOM05D003597 ORTHO05D004420 5.4e-91 338.2 269 74.7
CSS0024515 Camellia sinensis var. sinensis HOM05D003597 ORTHO05D004420 1.2e-50 204.1 167 72.5
Actinidia23041 Actinidia chinensis HOM05D003597 ORTHO05D004420 1.3e-49 200.7 160 71.9
Rhsim06G0109200 Rhododendron simsii HOM05D003597 ORTHO05D004420 4.9e-44 182.2 154 65.6
vmacro12529 Vaccinium macrocarpon HOM05D003597 ORTHO05D004420 2.1e-42 176.8 158 65.2
GSVIVG01008944001 Vitis vinifera HOM05D003597 ORTHO05D004420 2.1e-39 166.8 161 62.1
Migut.C01191 Erythranthe guttata HOM05D003597 ORTHO05D004420 8.1e-39 164.9 159 64.2
Cc00_g02330 Coffea canephora HOM05D003597 ORTHO05D004420 2.4e-38 163.3 155 61.9
DCAR_014282 Daucus carota HOM05D003597 ORTHO05D004420 9.0e-38 161.4 161 61.5
Haze_00525 Corylus avellana HOM05D003597 ORTHO05D004420 1.3e-36 157.5 164 58.5
Cfa015958 Carpinus fangiana HOM05D003597 ORTHO05D004420 4.9e-36 155.6 154 61.0
SalBow7G0935 Salvia bowleyana HOM05D003597 ORTHO05D004420 4.9e-36 155.6 160 58.8
SalBow7G4807 Salvia bowleyana HOM05D003597 ORTHO05D004420 4.9e-36 155.6 160 58.8
MBI03_g11136_MAGBIO Magnolia biondii HOM05D003597 ORTHO05D004420 6.4e-36 155.2 154 63.0
Oeu030027.4 Olea europaea HOM05D003597 ORTHO05D004420 2.5e-35 153.3 161 59.6
Aqoxy5G02474 Aquilegia oxysepala HOM05D003597 ORTHO05D004420 1.2e-34 151.0 161 57.8
SGA_v2.0_scaffold118G32437 Striga asiatica HOM05D003597 ORTHO05D004420 1.6e-34 150.6 161 59.0
Cpa.g.c31003 Carica papaya HOM05D003597 ORTHO05D004420 4.6e-34 149.1 160 58.8
CiPaw.05G229100 Carya illinoinensis HOM05D003597 ORTHO05D004420 7.9e-34 148.3 146 59.6
Nitab4.5_0000051g0110 Nicotiana tabacum HOM05D003597 ORTHO05D004420 7.9e-34 148.3 161 57.8
Nitab4.5_0002496g0040 Nicotiana tabacum HOM05D003597 ORTHO05D004420 7.9e-34 148.3 161 57.8
PSO017G6492 Papaver somniferum HOM05D003597 ORTHO05D004420 1.8e-33 147.1 162 56.8
Potri.002G089400 Populus trichocarpa HOM05D003597 ORTHO05D004420 1.8e-33 147.1 160 56.9
PSO170G0537 Papaver somniferum HOM05D003597 ORTHO05D004420 3.0e-33 146.4 161 56.5
MSTRG.25418 Avicennia marina HOM05D003597 ORTHO05D004420 5.1e-33 145.6 160 58.1
Oeu043794.4 Olea europaea HOM05D003597 ORTHO05D004420 5.1e-33 145.6 160 58.1
Thecc.08G116700 Theobroma cacao HOM05D003597 ORTHO05D004420 8.7e-33 144.8 159 56.6
COL.COLO4_03393 Corchorus olitorius HOM05D003597 ORTHO05D004420 1.1e-32 144.4 159 56.0
Manes.18G072800 Manihot esculenta HOM05D003597 ORTHO05D004420 1.1e-32 144.4 159 55.3
Duzib041G0227 Durio zibethinus HOM05D003597 ORTHO05D004420 1.5e-32 144.1 159 56.6
Potri.005G171800 Populus trichocarpa HOM05D003597 ORTHO05D004420 1.9e-32 143.7 160 55.6
DCAR_031233 Daucus carota HOM05D003597 ORTHO05D004420 4.3e-32 142.5 160 55.6
Sabra05G0129300 Salix brachista HOM05D003597 ORTHO05D004420 4.3e-32 142.5 160 55.0
Solyc11g013530.3 Solanum lycopersicum HOM05D003597 ORTHO05D004420 4.3e-32 142.5 161 56.5
Sopen11g008560 Solanum pennellii HOM05D003597 ORTHO05D004420 4.3e-32 142.5 161 56.5
Nn5g27956 Nelumbo nucifera HOM05D003597 ORTHO05D004420 5.6e-32 142.1 160 53.1
QL12p035319 Quercus lobata HOM05D003597 ORTHO05D004420 9.6e-32 141.4 155 56.1
Sc01g0001560 Simmondsia chinensis HOM05D003597 ORTHO05D004420 9.6e-32 141.4 160 55.0
CAN.G255.18 Capsicum annuum HOM05D003597 ORTHO05D004420 1.3e-31 141.0 161 55.9
Gorai.002G220300 Gossypium raimondii HOM05D003597 ORTHO05D004420 1.3e-31 141.0 159 56.0
TAR197G0005 Trochodendron aralioides HOM05D003597 ORTHO05D004420 1.3e-31 141.0 161 55.9
MBI06_g01044_MAGBIO Magnolia biondii HOM05D003597 ORTHO05D004420 1.6e-31 140.6 156 57.1
Peaxi162Scf00476g00039 Petunia axillaris HOM05D003597 ORTHO05D004420 8.2e-31 138.3 159 55.3
Gohir.D01G182100 Gossypium hirsutum HOM05D003597 ORTHO05D004420 1.4e-30 137.5 159 54.7
Hund27061 Selenicereus undatus HOM05D003597 ORTHO05D004420 1.8e-30 137.1 160 53.8
SGA_v2.0_scaffold24G10505 Striga asiatica HOM05D003597 ORTHO05D004420 1.8e-30 137.1 141 61.0
Gohir.A01G187600 Gossypium hirsutum HOM05D003597 ORTHO05D004420 2.4e-30 136.7 159 55.3
Atru.chr13.1317 Acer truncatum HOM05D003597 ORTHO05D004420 6.9e-30 135.2 159 55.3
Atru.chr13.1361 Acer truncatum HOM05D003597 ORTHO05D004420 6.9e-30 135.2 159 55.3
Sabra02G0070400 Salix brachista HOM05D003597 ORTHO05D004420 6.9e-30 135.2 161 54.0
Prupe.1G506100 Prunus persica HOM05D003597 ORTHO05D004420 9.0e-30 134.8 155 51.6
Duzib093G1782 Durio zibethinus HOM05D003597 ORTHO05D004420 4.5e-29 132.5 159 54.1
Gorai.010G047000 Gossypium raimondii HOM05D003597 ORTHO05D004420 7.6e-29 131.7 159 54.7
Gohir.D06G041800 Gossypium hirsutum HOM05D003597 ORTHO05D004420 1.3e-28 131.0 159 54.7
Lj4C579G4 Lonicera japonica HOM05D003597 ORTHO05D004420 1.7e-28 130.6 137 60.6
VMungo1309G0254 Vigna mungo HOM05D003597 ORTHO05D004420 1.7e-28 130.6 161 54.7
Gohir.A06G040800 Gossypium hirsutum HOM05D003597 ORTHO05D004420 4.9e-28 129.0 159 54.1
RcHm_v2.0_Chr7g0240911 Rosa chinensis HOM05D003597 ORTHO05D004420 4.9e-28 129.0 156 51.3
MD15G1358500 Malus domestica HOM05D003597 ORTHO05D004420 6.5e-28 128.6 153 52.3
Phvul.009G025800 Phaseolus vulgaris HOM05D003597 ORTHO05D004420 6.5e-28 128.6 161 54.7
MSTRG.1487 Avicennia marina HOM05D003597 ORTHO05D004420 8.4e-28 128.3 137 59.1
TWI36G0588 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 1.4e-27 127.5 160 53.8
ECA246G2386 Erigeron canadensis HOM05D003597 ORTHO05D004420 2.5e-27 126.7 158 49.4
Lalb_Chr08g0241721 Lupinus albus HOM05D003597 ORTHO05D004420 2.5e-27 126.7 161 52.2
arahy.Tifrunner.gnm1.ann1.WJPD8A Arachis hypogaea HOM05D003597 ORTHO05D004420 4.2e-27 125.9 157 54.8
Glyma.06G108500 Glycine max HOM05D003597 ORTHO05D004420 5.5e-27 125.6 161 52.2
FAN18G1206 Fragaria x ananassa HOM05D003597 ORTHO05D004420 1.2e-26 124.4 161 49.1
EL10Ac1g00040 Beta vulgaris HOM05D003597 ORTHO05D004420 1.6e-26 124.0 159 52.2
Carub.0002s2470 Capsella rubella HOM05D003597 ORTHO05D004420 1.6e-26 124.0 154 48.7
FAN13G2877 Fragaria x ananassa HOM05D003597 ORTHO05D004420 1.6e-26 124.0 161 49.7
FvH4_5g38940 Fragaria vesca HOM05D003597 ORTHO05D004420 2.1e-26 123.6 161 49.1
Medtr3g073320 Medicago truncatula HOM05D003597 ORTHO05D004420 3.5e-26 122.9 163 51.5
ClCG03G009090 Citrullus lanatus HOM05D003597 ORTHO05D004420 4.6e-26 122.5 159 50.3
Glyma.04G253800 Glycine max HOM05D003597 ORTHO05D004420 4.6e-26 122.5 161 52.2
Lj1g0013609 Lotus japonicus HOM05D003597 ORTHO05D004420 4.6e-26 122.5 161 51.6
TWI12G1217 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 7.9e-26 121.7 163 54.6
HanXRQChr05g0150511 Helianthus annuus HOM05D003597 ORTHO05D004420 1.0e-25 121.3 163 49.1
TWI56G1037 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 1.3e-25 120.9 160 52.5
Ca_25762_v3 Cicer arietinum L. HOM05D003597 ORTHO05D004420 2.3e-25 120.2 163 50.3
Ciclev10000027m.g Citrus clementina HOM05D003597 ORTHO05D004420 2.3e-25 120.2 161 50.3
TPR.G32944 Trifolium pratense HOM05D003597 ORTHO05D004420 3.0e-25 119.8 163 50.3
AUR62023609 Chenopodium quinoa HOM05D003597 ORTHO05D004420 3.9e-25 119.4 155 49.7
CsaV3_5G023530 Cucumis sativus L. HOM05D003597 ORTHO05D004420 3.9e-25 119.4 158 48.1
Eucgr.F03741 Eucalyptus grandis HOM05D003597 ORTHO05D004420 5.1e-25 119.0 155 48.4
FAN04G0001 Fragaria x ananassa HOM05D003597 ORTHO05D004420 5.1e-25 119.0 161 49.1
MELO3C022786.2 Cucumis melo HOM05D003597 ORTHO05D004420 6.7e-25 118.6 158 48.1
MD08G1173200 Malus domestica HOM05D003597 ORTHO05D004420 3.3e-24 116.3 161 47.8
Aa31LG4G7900 Aethionema arabicum HOM05D003597 ORTHO05D004420 4.3e-24 115.9 155 48.4
Sed0005676 Sechium edule HOM05D003597 ORTHO05D004420 5.7e-24 115.5 183 45.4
AL2G38040 Arabidopsis lyrata HOM05D003597 ORTHO05D004420 2.2e-23 113.6 155 45.8
AUR62004693 Chenopodium quinoa HOM05D003597 ORTHO05D004420 2.2e-23 113.6 155 48.4
Thhalv10018012m.g Eutrema salsugineum HOM05D003597 ORTHO05D004420 6.3e-23 112.1 155 46.5
AT1G77800 Arabidopsis thaliana HOM05D003597 ORTHO05D004420 4.1e-22 109.4 155 45.2
CANSAT25G1161 Cannabis sativa HOM05D003597 ORTHO05D004420 4.1e-22 109.4 155 47.7
THA.LOC104800176 Tarenaya hassleriana HOM05D003597 ORTHO05D004420 5.3e-22 109.0 156 48.7
Ah.05g172620 Amaranthus hybridus HOM05D003597 ORTHO05D004420 6.9e-22 108.6 155 47.7
Lsat_1_v5_gn_6_109621 Lactuca sativa HOM05D003597 ORTHO05D004420 1.5e-21 107.5 176 45.5
Sp5g32980 Schrenkiella parvula HOM05D003597 ORTHO05D004420 1.5e-21 107.5 156 44.9
arahy.Tifrunner.gnm1.ann1.Y09WXD Arachis hypogaea HOM05D003597 ORTHO05D004420 1.0e-20 104.8 139 53.2
PGR042G3777 Punica granatum HOM05D003597 ORTHO05D004420 1.3e-20 104.4 161 46.6
BcaB03g15920 Brassica carinata HOM05D003597 ORTHO05D004420 2.9e-20 103.2 155 46.5
THA.LOC104813639 Tarenaya hassleriana HOM05D003597 ORTHO05D004420 3.8e-20 102.8 155 45.2
unitig_0.g2128 Utricularia gibba HOM05D003597 ORTHO05D004420 3.8e-20 102.8 157 49.0
Lalb_Chr17g0344031 Lupinus albus HOM05D003597 ORTHO05D004420 6.5e-20 102.1 163 47.9
BcaB05g25080 Brassica carinata HOM05D003597 ORTHO05D004420 8.5e-20 101.7 155 44.5
CDE06G1078 Ceratophyllum demersum HOM05D003597 ORTHO05D004420 1.9e-19 100.5 159 44.7
CDE06G0857 Ceratophyllum demersum HOM05D003597 ORTHO05D004420 2.5e-19 100.1 154 45.5
A07p43090 Brassica napus HOM05D003597 ORTHO05D004420 3.2e-19 99.8 156 45.5
BcaC03g15776 Brassica carinata HOM05D003597 ORTHO05D004420 5.5e-19 99.0 155 43.2
C02p35180 Brassica napus HOM05D003597 ORTHO05D004420 7.2e-19 98.6 155 42.6
A02p21890 Brassica napus HOM05D003597 ORTHO05D004420 1.2e-18 97.8 155 42.6
BcaC08g47623 Brassica carinata HOM05D003597 ORTHO05D004420 2.7e-18 96.7 156 44.2
C06p51740 Brassica napus HOM05D003597 ORTHO05D004420 2.7e-18 96.7 156 44.2
BolC2t09533H Brassica oleracea HOM05D003597 ORTHO05D004420 4.6e-18 95.9 156 43.6
BraA07t31831Z Brassica rapa HOM05D003597 ORTHO05D004420 7.9e-18 95.1 157 42.7
BolC6t40196H Brassica oleracea HOM05D003597 ORTHO05D004420 2.3e-17 93.6 157 42.0
BraA02t07190Z Brassica rapa HOM05D003597 ORTHO05D004420 3.0e-17 93.2 156 42.3
CARHR071300 Cardamine hirsuta HOM05D003597 ORTHO05D004420 3.9e-17 92.8 137 43.8
Zm00001eb256170 Zea mays HOM05D003597 ORTHO05D004420 5.1e-17 92.4 147 41.5
HPP92_004120 Vanilla planifolia HOM05D003597 ORTHO05D004420 8.8e-17 91.7 155 41.9
Lalb_Chr11g0065691 Lupinus albus HOM05D003597 ORTHO05D004420 2.5e-16 90.1 143 41.3
Zm00001eb193530 Zea mays HOM05D003597 ORTHO05D004420 4.3e-16 89.4 150 41.3
ATR0121G011 Amborella trichopoda HOM05D003597 ORTHO05D004420 5.7e-16 89.0 163 40.5
SHI48839 Sapria himalayana HOM05D003597 ORTHO05D004420 1.4e-14 84.3 161 39.8
Dinv27384 Davidia involucrata HOM05D003597 ORTHO05D004420 1.9e-11 73.9 113 49.6
Zm00001eb278990 Zea mays HOM05D003597 ORTHO05D004420 6.7e-09 65.5 172 37.8
Actinidia02593 Actinidia chinensis HOM05D003597 ORTHO05D004420 7.4e-08 62.0 33 93.9
HPP92_004068 Vanilla planifolia HOM05D003597 ORTHO05D004420 1.7e-07 60.8 150 34.7
Manes.02G158666 Manihot esculenta HOM05D003597 ORTHO05D004420 1.8e-06 57.4 70 47.1
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 2.4e-06 57.0 76 51.3


User provided reference genes

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