Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017665 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 4.6e-51 204.1 94 100.0
CSS0018031 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 4.6e-51 204.1 94 100.0
Actinidia12812 Actinidia chinensis HOM05D004367 ORTHO05D004937 1.3e-13 79.7 52 69.2
vmacro11860 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 5.0e-13 77.8 52 67.3
vmacro22868 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 5.0e-13 77.8 52 67.3
CSS0040030 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 1.1e-12 76.6 52 65.4
CSS0040505 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 1.1e-12 76.6 52 65.4
Cfa020594 Carpinus fangiana HOM05D004367 ORTHO05D004937 1.1e-12 76.6 52 67.3
Dinv04310 Davidia involucrata HOM05D004367 ORTHO05D004937 1.1e-12 76.6 55 63.6
Dinv20169 Davidia involucrata HOM05D000397 ORTHO05D004937 1.4e-12 76.3 52 63.5
Oeu005412.1 Olea europaea HOM05D004367 ORTHO05D004937 1.4e-12 76.3 49 67.3
SGA_v2.0_scaffold34G13821 Striga asiatica HOM05D004367 ORTHO05D004937 1.4e-12 76.3 49 69.4
Gohir.A01G064120 Gossypium hirsutum HOM05D004367 ORTHO05D004937 1.9e-12 75.9 83 47.0
SalBow8G0254 Salvia bowleyana HOM05D004367 ORTHO05D004937 2.5e-12 75.5 49 67.3
TAR624G0790 Trochodendron aralioides HOM05D004367 ORTHO05D004937 2.5e-12 75.5 49 65.3
Migut.M00812 Erythranthe guttata HOM05D004367 ORTHO05D004937 3.2e-12 75.1 49 65.3
MD03G1226500 Malus domestica HOM05D004367 ORTHO05D004937 3.2e-12 75.1 52 65.4
PSO210G1788 Papaver somniferum HOM05D004367 ORTHO05D004937 3.2e-12 75.1 52 55.8
Atru.chr2.2673 Acer truncatum HOM05D004367 ORTHO05D004937 4.2e-12 74.7 52 65.4
Prupe.4G182900 Prunus persica HOM05D004367 ORTHO05D004937 4.2e-12 74.7 52 65.4
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 4.2e-12 74.7 52 63.5
QL05p086116 Quercus lobata HOM05D004367 ORTHO05D004937 7.2e-12 73.9 52 65.4
QL08p021548 Quercus lobata HOM05D004367 ORTHO05D004937 7.2e-12 73.9 52 65.4
MSTRG.15226 Avicennia marina HOM05D004367 ORTHO05D004937 1.2e-11 73.2 49 63.3
Cc05_g12110 Coffea canephora HOM05D004367 ORTHO05D004937 1.6e-11 72.8 49 61.2
Lj1A844G36 Lonicera japonica HOM05D004367 ORTHO05D004937 1.6e-11 72.8 52 59.6
Lj3g0015758 Lotus japonicus HOM05D004367 ORTHO05D004937 1.6e-11 72.8 52 63.5
MD11G1244600 Malus domestica HOM05D004367 ORTHO05D004937 1.6e-11 72.8 102 42.2
Glyma.13G277700 Glycine max HOM05D004367 ORTHO05D004937 2.1e-11 72.4 52 63.5
HPP92_007964 Vanilla planifolia HOM05D004367 ORTHO05D004937 2.1e-11 72.4 52 61.5
VMungo1080G0845 Vigna mungo HOM05D004367 ORTHO05D004937 2.1e-11 72.4 52 61.5
Nn1g06556 Nelumbo nucifera HOM05D004367 ORTHO05D004937 2.7e-11 72.0 49 63.3
Oeu060551.2 Olea europaea HOM05D004367 ORTHO05D004937 2.7e-11 72.0 49 65.3
Psat5g242760 Pisum sativum HOM05D004367 ORTHO05D004937 2.7e-11 72.0 52 61.5
Hund22921 Selenicereus undatus HOM05D004367 ORTHO05D004937 2.7e-11 72.0 52 59.6
Sc16g0006960 Simmondsia chinensis HOM05D004367 ORTHO05D004937 2.7e-11 72.0 52 57.7
Nitab4.5_0000207g0150 Nicotiana tabacum HOM05D004367 ORTHO05D004937 3.6e-11 71.6 52 61.5
Nitab4.5_0002383g0110 Nicotiana tabacum HOM05D004367 ORTHO05D004937 3.6e-11 71.6 52 61.5
Peaxi162Scf00027g02615 Petunia axillaris HOM05D004367 ORTHO05D004937 3.6e-11 71.6 52 61.5
arahy.Tifrunner.gnm1.ann1.6ZWE2K Arachis hypogaea HOM05D004367 ORTHO05D004937 4.6e-11 71.2 52 61.5
arahy.Tifrunner.gnm1.ann1.SV3A8G Arachis hypogaea HOM05D004367 ORTHO05D004937 4.6e-11 71.2 52 61.5
Ciclev10008024m.g Citrus clementina HOM05D004367 ORTHO05D004937 4.6e-11 71.2 49 65.3
FvH4_3g20190 Fragaria vesca HOM05D004367 ORTHO05D004937 4.6e-11 71.2 52 61.5
FAN16G0302 Fragaria x ananassa HOM05D004367 ORTHO05D004937 4.6e-11 71.2 52 61.5
FAN21G3330 Fragaria x ananassa HOM05D004367 ORTHO05D004937 4.6e-11 71.2 52 61.5
FAN25G3266 Fragaria x ananassa HOM05D004367 ORTHO05D004937 4.6e-11 71.2 52 61.5
RcHm_v2.0_Chr5g0034001 Rosa chinensis HOM05D004367 ORTHO05D004937 4.6e-11 71.2 52 61.5
PGSC0003DMG400025036 Solanum tuberosum HOM05D004367 ORTHO05D004937 4.6e-11 71.2 52 61.5
AUR62029381 Chenopodium quinoa HOM05D004367 ORTHO05D004937 7.9e-11 70.5 49 59.2
Duzib213G0391 Durio zibethinus HOM05D004367 ORTHO05D004937 7.9e-11 70.5 49 63.3
Rhsim06G0197900 Rhododendron simsii HOM05D004367 ORTHO05D004937 7.9e-11 70.5 52 63.5
Manes.03G110700 Manihot esculenta HOM05D004367 ORTHO05D004937 1.0e-10 70.1 47 66.0
Phvul.005G070800 Phaseolus vulgaris HOM05D004367 ORTHO05D004937 1.0e-10 70.1 52 59.6
GSVIVG01014349001 Vitis vinifera HOM05D004367 ORTHO05D004937 1.0e-10 70.1 49 63.3
ATR0730G126 Amborella trichopoda HOM05D004367 ORTHO05D004937 1.4e-10 69.7 49 61.2
EL10Ac4g08166 Beta vulgaris HOM05D004367 ORTHO05D004937 1.4e-10 69.7 49 57.1
Gorai.002G071000 Gossypium raimondii HOM05D004367 ORTHO05D004937 1.8e-10 69.3 67 49.3
Hma1.2p1_0480F.1_g161800 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 1.8e-10 69.3 52 55.8
Hma1.2p1_0480F.1_g161810 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 1.8e-10 69.3 52 55.8
Cpa.g.sc80.55 Carica papaya HOM05D004367 ORTHO05D004937 2.3e-10 68.9 52 55.8
Ciclev10008854m.g Citrus clementina HOM05D004367 ORTHO05D004937 2.3e-10 68.9 49 63.3
COL.COLO4_09395 Corchorus olitorius HOM05D004367 ORTHO05D004937 2.3e-10 68.9 49 61.2
Eucgr.F01119 Eucalyptus grandis HOM05D004367 ORTHO05D004937 2.3e-10 68.9 52 59.6
Gohir.D01G051200 Gossypium hirsutum HOM05D004367 ORTHO05D004937 2.3e-10 68.9 49 63.3
SGA_v2.0_scaffold73G24268 Striga asiatica HOM05D004367 ORTHO05D004937 2.3e-10 68.9 49 61.2
BcaB08g35738 Brassica carinata HOM05D004367 ORTHO05D004937 3.0e-10 68.6 52 61.5
BcaC04g20419 Brassica carinata HOM05D004367 ORTHO05D004937 3.0e-10 68.6 52 61.5
C09p43730 Brassica napus HOM05D004367 ORTHO05D004937 3.0e-10 68.6 52 61.5
BolC9t57258H Brassica oleracea HOM05D004367 ORTHO05D004937 3.0e-10 68.6 52 61.5
CiPaw.11G168700 Carya illinoinensis HOM05D004367 ORTHO05D004937 3.0e-10 68.6 52 59.6
Lalb_Chr25g0286441 Lupinus albus HOM05D004367 ORTHO05D004937 3.0e-10 68.6 50 62.0
A10p11150 Brassica napus HOM05D004367 ORTHO05D004937 3.9e-10 68.2 52 61.5
BraA10t43208Z Brassica rapa HOM05D004367 ORTHO05D004937 3.9e-10 68.2 52 61.5
Ca_01836_v3 Cicer arietinum L. HOM05D004367 ORTHO05D004937 3.9e-10 68.2 49 59.2
DCAR_017144 Daucus carota HOM05D004367 ORTHO05D004937 3.9e-10 68.2 52 61.5
MBI07_g32654_MAGBIO Magnolia biondii HOM05D004367 ORTHO05D004937 3.9e-10 68.2 52 55.8
Potri.001G400800 Populus trichocarpa HOM05D004367 ORTHO05D004937 3.9e-10 68.2 52 57.7
Solyc10g006990.3 Solanum lycopersicum HOM05D004367 ORTHO05D004937 5.1e-10 67.8 52 59.6
Sopen10g002900 Solanum pennellii HOM05D004367 ORTHO05D004937 5.1e-10 67.8 52 59.6
TWI39G0928 Tripterygium wilfordii HOM05D004367 ORTHO05D004937 6.7e-10 67.4 52 57.7
AT5G53770 Arabidopsis thaliana HOM05D004367 ORTHO05D004937 8.8e-10 67.0 52 59.6
Carub.0008s1407 Capsella rubella HOM05D004367 ORTHO05D004937 8.8e-10 67.0 49 63.3
Thhalv10013073m.g Eutrema salsugineum HOM05D004367 ORTHO05D004937 8.8e-10 67.0 52 57.7
Sed0004687 Sechium edule HOM05D004367 ORTHO05D004937 8.8e-10 67.0 52 53.8
Aqoxy4G00819 Aquilegia oxysepala HOM05D004367 ORTHO05D004937 1.1e-09 66.6 52 53.8
Sp6g15840 Schrenkiella parvula HOM05D004367 ORTHO05D004937 1.1e-09 66.6 52 59.6
THA.LOC104799923 Tarenaya hassleriana HOM05D004367 ORTHO05D004937 1.1e-09 66.6 52 55.8
Thecc.07G087300 Theobroma cacao HOM05D004367 ORTHO05D004937 1.1e-09 66.6 50 62.0
BcaB05g22072 Brassica carinata HOM05D004367 ORTHO05D004937 1.5e-09 66.2 52 59.6
Hma1.2p1_2210F.1_g317160 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 1.5e-09 66.2 47 57.4
Sabra16G0262900 Salix brachista HOM05D004367 ORTHO05D004937 2.5e-09 65.5 52 55.8
TPR.G38993 Trifolium pratense HOM05D004367 ORTHO05D004937 2.5e-09 65.5 49 57.1
Aa31LG3G10140 Aethionema arabicum HOM05D004367 ORTHO05D004937 4.3e-09 64.7 52 57.7
AL8G28710 Arabidopsis lyrata HOM05D004367 ORTHO05D004937 4.3e-09 64.7 52 57.7
ClCG11G018120 Citrullus lanatus HOM05D004367 ORTHO05D004937 4.3e-09 64.7 49 55.1
Medtr2g079330 Medicago truncatula HOM05D004367 ORTHO05D004937 4.3e-09 64.7 49 55.1
CARHR266920 Cardamine hirsuta HOM05D004367 ORTHO05D004937 9.7e-09 63.5 49 59.2
TWI38G0759 Tripterygium wilfordii HOM05D004367 ORTHO05D004937 1.7e-08 62.8 52 53.8
Zm00001eb157140 Zea mays HOM05D004367 ORTHO05D004937 2.2e-08 62.4 48 52.1
MELO3C016705.2 Cucumis melo HOM05D004367 ORTHO05D004937 2.8e-08 62.0 49 53.1
CsaV3_4G033760 Cucumis sativus L. HOM05D004367 ORTHO05D004937 2.8e-08 62.0 49 53.1
ECA234G0664 Erigeron canadensis HOM05D004367 ORTHO05D004937 2.8e-08 62.0 52 53.8
HanXRQChr12g0361521 Helianthus annuus HOM05D004367 ORTHO05D004937 3.7e-08 61.6 70 47.1
Lsat_1_v5_gn_5_127821 Lactuca sativa HOM05D004367 ORTHO05D004937 3.7e-08 61.6 49 55.1
Ah.06g184060 Amaranthus hybridus HOM05D004367 ORTHO05D004937 8.2e-08 60.5 49 51.0
GSVIVG01018197001 Vitis vinifera HOM05D002310 ORTHO05D002326 8.2e-08 60.5 54 51.9
SEGI_01564 Sequoiadendron giganteum HOM05D004367 ORTHO05D004937 5.3e-07 57.8 52 46.2
PGR083G2352 Punica granatum HOM05D004367 ORTHO05D004937 6.9e-07 57.4 53 54.7
Mapoly0006s0037 Marchantia polymorpha HOM05D004367 ORTHO05D004937 1.5e-06 56.2 49 46.9
Pp3c24_20390 Physcomitrium patens HOM05D004367 ORTHO05D004937 2.0e-06 55.8 49 46.9
SMO356G0731 Selaginella moellendorffii HOM05D004367 ORTHO05D004937 2.6e-06 55.5 50 46.0
unitig_899.g15291 Utricularia gibba HOM05D004367 ORTHO05D004937 2.6e-06 55.5 49 51.0
MCO11G842 Micromonas commoda HOM05D004367 ORTHO05D004937 7.7e-06 53.9 49 44.9


User provided reference genes

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