Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017424 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.1e-75 286.6 142 100.0
CSS0039673 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 7.9e-39 164.1 80 100.0
CSS0010926 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.1e-32 143.7 86 86.0
Rhsim13G0207800 Rhododendron simsii HOM05D002917 ORTHO05D002431 4.7e-15 85.1 76 64.5
GSVIVG01037326001 Vitis vinifera HOM05D002917 ORTHO05D002431 5.2e-14 81.6 117 46.2
Dinv15024 Davidia involucrata HOM05D002917 ORTHO05D002431 2.6e-13 79.3 79 55.7
MBI19_g20793_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 6.3e-12 74.7 48 72.9
Nn7g36760 Nelumbo nucifera HOM05D002917 ORTHO05D002431 2.4e-11 72.8 65 63.1
Aqoxy1G00393 Aquilegia oxysepala HOM05D002917 ORTHO05D002431 3.1e-11 72.4 78 51.3
MBI02_g18928_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 4.1e-11 72.0 66 51.5
Nitab4.5_0009266g0010 Nicotiana tabacum HOM05D012161 ORTHO05D002431 9.2e-11 70.9 61 54.1
PGR119G1093 Punica granatum HOM05D002917 ORTHO05D002431 1.2e-10 70.5 58 63.8
MBI05_g00334_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 1.6e-10 70.1 81 48.1
Nitab4.5_0006764g0020 Nicotiana tabacum HOM05D012161 ORTHO05D002431 2.0e-10 69.7 61 54.1
Eucgr.J00684 Eucalyptus grandis HOM05D002917 ORTHO05D002431 2.7e-10 69.3 72 52.8
Oeu032569.1 Olea europaea HOM05D002917 ORTHO05D002431 2.7e-10 69.3 71 50.7
CiPaw.13G149300 Carya illinoinensis HOM05D002917 ORTHO05D002431 3.5e-10 68.9 80 52.5
AT5G19473 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 5.9e-10 68.2 82 46.3
Atru.chr3.2999 Acer truncatum HOM05D002917 ORTHO05D002431 1.7e-09 66.6 69 58.0
CANSAT54G1823 Cannabis sativa HOM05D002917 ORTHO05D002431 1.7e-09 66.6 81 50.6
MBI13_g08983_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 2.3e-09 66.2 59 62.7
Phvul.006G015600 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 2.3e-09 66.2 63 60.3
Prupe.4G264200 Prunus persica HOM05D002917 ORTHO05D002431 2.3e-09 66.2 82 47.6
Haze_23253 Corylus avellana HOM05D002917 ORTHO05D002431 2.9e-09 65.9 81 54.3
Thecc.09G247400 Theobroma cacao HOM05D002917 ORTHO05D002431 2.9e-09 65.9 68 57.4
MD03G1164700 Malus domestica HOM05D012161 ORTHO05D002431 3.8e-09 65.5 56 57.1
Sabra09G0050600 Salix brachista HOM05D002917 ORTHO05D002431 3.8e-09 65.5 68 51.5
Lalb_Chr04g0249281 Lupinus albus HOM05D009394 ORTHO05D002431 5.0e-09 65.1 85 45.9
Ciclev10018107m.g Citrus clementina HOM05D002917 ORTHO05D002431 6.6e-09 64.7 69 52.2
Glyma.15G055400 Glycine max HOM05D009394 ORTHO05D002431 6.6e-09 64.7 59 54.2
Carub.0006s1781 Capsella rubella HOM05D002917 ORTHO05D002431 1.1e-08 63.9 79 44.3
Lj6g0020665 Lotus japonicus HOM05D009394 ORTHO05D002431 1.1e-08 63.9 81 46.9
Manes.02G136400 Manihot esculenta HOM05D002917 ORTHO05D002431 1.1e-08 63.9 64 53.1
CDE05G1734 Ceratophyllum demersum HOM05D002917 ORTHO05D002431 1.9e-08 63.2 76 46.1
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 1.9e-08 63.2 67 58.2
arahy.Tifrunner.gnm1.ann1.9R5XSH Arachis hypogaea HOM05D002917 ORTHO05D002431 2.5e-08 62.8 73 43.8
Potri.001G273300 Populus trichocarpa HOM05D002917 ORTHO05D002431 2.5e-08 62.8 71 45.1
Potri.009G067600 Populus trichocarpa HOM05D002917 ORTHO05D002431 3.3e-08 62.4 89 40.4
Psat2g020800 Pisum sativum HOM05D009394 ORTHO05D002431 4.3e-08 62.0 81 48.1
Sc09g0001070 Simmondsia chinensis HOM05D009394 ORTHO05D002431 5.6e-08 61.6 82 48.8
Sopen11g024730 Solanum pennellii HOM05D012161 ORTHO05D002431 7.3e-08 61.2 61 50.8
Phvul.006G204500 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 9.5e-08 60.8 45 64.4
RcHm_v2.0_Chr5g0050361 Rosa chinensis HOM05D012161 ORTHO05D002431 1.2e-07 60.5 83 47.0
Actinidia33358 Actinidia chinensis HOM05D002917 ORTHO05D002431 1.6e-07 60.1 56 53.6
CSS0021781 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.6e-07 60.1 62 51.6
MELO3C007484.2 Cucumis melo HOM05D002917 ORTHO05D002431 1.6e-07 60.1 61 50.8
CsaV3_6G042410 Cucumis sativus L. HOM05D002917 ORTHO05D002431 1.6e-07 60.1 61 50.8
Solyc11g064930.3 Solanum lycopersicum HOM05D012161 ORTHO05D002431 1.6e-07 60.1 61 49.2
TPR.G16410 Trifolium pratense HOM05D009394 ORTHO05D002431 1.6e-07 60.1 73 47.9
CsaV3_2G017680 Cucumis sativus L. HOM05D002917 ORTHO05D002431 2.1e-07 59.7 79 46.8
PSO170G5757 Papaver somniferum HOM05D002917 ORTHO05D002431 2.1e-07 59.7 79 46.8
Peaxi162Scf00359g00124 Petunia axillaris HOM05D002917 ORTHO05D002431 2.1e-07 59.7 57 54.4
Aqoxy6G00467 Aquilegia oxysepala HOM05D002917 ORTHO05D002431 2.8e-07 59.3 85 43.5
AL6G30970 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 2.8e-07 59.3 82 42.7
CARHR193450 Cardamine hirsuta HOM05D002917 ORTHO05D002431 2.8e-07 59.3 58 53.4
Cc07_g16300 Coffea canephora HOM05D002917 ORTHO05D002431 2.8e-07 59.3 56 55.4
COL.COLO4_24485 Corchorus olitorius HOM05D009394 ORTHO05D002431 2.8e-07 59.3 75 50.7
LjContig00564g0021896 Lotus japonicus HOM05D009394 ORTHO05D002431 2.8e-07 59.3 58 55.2
Sed0016541 Sechium edule HOM05D002917 ORTHO05D002431 2.8e-07 59.3 55 52.7
Glyma.07G232600 Glycine max HOM05D009394 ORTHO05D002431 3.6e-07 58.9 60 51.7
SGA_v2.0_scaffold310G48220 Striga asiatica HOM05D014772 ORTHO05D019381 3.6e-07 58.9 53 56.6
HPP92_001700 Vanilla planifolia HOM05D002917 ORTHO05D002431 3.6e-07 58.9 49 61.2
Gohir.A09G110600 Gossypium hirsutum HOM05D009394 ORTHO05D002431 4.7e-07 58.5 65 47.7
Gohir.D09G107100 Gossypium hirsutum HOM05D009394 ORTHO05D002431 4.7e-07 58.5 65 47.7
Gorai.006G124700 Gossypium raimondii HOM05D009394 ORTHO05D002431 4.7e-07 58.5 65 47.7
Nitab4.5_0007284g0050 Nicotiana tabacum HOM05D002917 ORTHO05D002431 4.7e-07 58.5 91 41.8
Oeu028368.1 Olea europaea HOM05D002917 ORTHO05D002431 4.7e-07 58.5 74 45.9
PSO541G0125 Papaver somniferum HOM05D002917 ORTHO05D002431 4.7e-07 58.5 56 51.8
PSO675G5205 Papaver somniferum HOM05D002917 ORTHO05D002431 4.7e-07 58.5 56 51.8
Phvul.009G139200 Phaseolus vulgaris HOM05D002917 ORTHO05D002431 4.7e-07 58.5 73 42.5
AT5G64850 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 6.1e-07 58.2 48 58.3
Cpa.g.sc34.178 Carica papaya HOM05D009394 ORTHO05D002431 6.1e-07 58.2 60 50.0
Haze_25049 Corylus avellana HOM05D002917 ORTHO05D002431 6.1e-07 58.2 53 52.8
MELO3C020960.2 Cucumis melo HOM05D002917 ORTHO05D002431 6.1e-07 58.2 62 50.0
DCAR_001372 Daucus carota HOM05D002917 ORTHO05D002431 6.1e-07 58.2 72 43.1
Thhalv10015114m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 6.1e-07 58.2 59 54.2
FvH4_3g27760 Fragaria vesca HOM05D012161 ORTHO05D002431 6.1e-07 58.2 54 57.4
FAN11G3775 Fragaria x ananassa HOM05D012161 ORTHO05D002431 6.1e-07 58.2 79 45.6
FAN21G0185 Fragaria x ananassa HOM05D002917 ORTHO05D002431 6.1e-07 58.2 74 51.4
Actinidia28896 Actinidia chinensis HOM05D002917 ORTHO05D002431 8.0e-07 57.8 55 50.9
AT5G09960 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 8.0e-07 57.8 59 54.2
CiPaw.04G091400 Carya illinoinensis HOM05D002917 ORTHO05D002431 8.0e-07 57.8 59 50.8
ClCG01G016140 Citrullus lanatus HOM05D002917 ORTHO05D002431 8.0e-07 57.8 58 51.7
Dinv19484 Davidia involucrata HOM05D002917 ORTHO05D002431 8.0e-07 57.8 60 48.3
Glyma.06G146800 Glycine max HOM05D002917 ORTHO05D002431 8.0e-07 57.8 73 41.1
Medtr5g089290 Medicago truncatula HOM05D009394 ORTHO05D002431 8.0e-07 57.8 77 48.1
Potri.007G080800 Populus trichocarpa HOM05D002917 ORTHO05D002431 8.0e-07 57.8 61 50.8
Actinidia06975 Actinidia chinensis HOM05D009394 ORTHO05D002431 1.0e-06 57.4 59 49.2
AL8G42330 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 1.0e-06 57.4 62 50.0
arahy.Tifrunner.gnm1.ann1.NQ28YP Arachis hypogaea HOM05D009394 ORTHO05D002431 1.0e-06 57.4 65 52.3
BcaB01g05147 Brassica carinata HOM05D002917 ORTHO05D002431 1.0e-06 57.4 47 61.7
A03p09490 Brassica napus HOM05D002917 ORTHO05D002431 1.0e-06 57.4 47 61.7
C03p11070 Brassica napus HOM05D002917 ORTHO05D002431 1.0e-06 57.4 47 61.7
BolC3t13577H Brassica oleracea HOM05D002917 ORTHO05D002431 1.0e-06 57.4 47 61.7
BraA03t10267Z Brassica rapa HOM05D002917 ORTHO05D002431 1.0e-06 57.4 47 61.7
TAR625G0139 Trochodendron aralioides HOM05D002917 ORTHO05D002431 1.0e-06 57.4 71 43.7
arahy.Tifrunner.gnm1.ann1.A4AUQP Arachis hypogaea HOM05D002917 ORTHO05D002431 1.4e-06 57.0 66 42.4
CANSAT01G0734 Cannabis sativa HOM05D002917 ORTHO05D002431 1.4e-06 57.0 61 50.8
Carub.0006s0840 Capsella rubella HOM05D002917 ORTHO05D002431 1.4e-06 57.0 59 54.2
Cpa.g.sc191.8 Carica papaya HOM05D002917 ORTHO05D002431 1.4e-06 57.0 57 52.6
CDE05G1218 Ceratophyllum demersum HOM05D002917 ORTHO05D002431 1.4e-06 57.0 74 39.2
ClCG02G001020 Citrullus lanatus HOM05D002917 ORTHO05D002431 1.4e-06 57.0 79 45.6
Eucgr.I00320 Eucalyptus grandis HOM05D002917 ORTHO05D002431 1.4e-06 57.0 97 41.2
Nn1g05176 Nelumbo nucifera HOM05D002917 ORTHO05D002431 1.4e-06 57.0 66 48.5
Nitab4.5_0004840g0020 Nicotiana tabacum HOM05D002917 ORTHO05D002431 1.4e-06 57.0 87 41.4
THA.LOC104819311 Tarenaya hassleriana HOM05D002917 ORTHO05D002431 1.4e-06 57.0 65 49.2
GSVIVG01022234001 Vitis vinifera HOM05D002917 ORTHO05D002431 1.4e-06 57.0 75 42.7
FAN26G2985 Fragaria x ananassa HOM05D002917 ORTHO05D002431 1.8e-06 56.6 74 43.2
Gorai.004G015000 Gossypium raimondii HOM05D009394 ORTHO05D002431 1.8e-06 56.6 82 41.5
HanXRQChr14g0446091 Helianthus annuus HOM05D002917 ORTHO05D002431 1.8e-06 56.6 77 40.3
Nitab4.5_0004378g0020 Nicotiana tabacum HOM05D002917 ORTHO05D002431 1.8e-06 56.6 87 40.2
Sed0016172 Sechium edule HOM05D002917 ORTHO05D002431 1.8e-06 56.6 74 41.9
SGA_v2.0_scaffold47G17704 Striga asiatica HOM05D002917 ORTHO05D002431 1.8e-06 56.6 47 57.4
arahy.Tifrunner.gnm1.ann1.S8RCCH Arachis hypogaea HOM05D009394 ORTHO05D002431 2.3e-06 56.2 65 50.8
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 2.3e-06 56.2 47 59.6
C09p56830 Brassica napus HOM05D002917 ORTHO05D002431 2.3e-06 56.2 47 59.6
BolC9t58537H Brassica oleracea HOM05D002917 ORTHO05D002431 2.3e-06 56.2 47 59.6
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 2.3e-06 56.2 47 59.6
HanXRQChr09g0259721 Helianthus annuus HOM05D002917 ORTHO05D002431 2.3e-06 56.2 48 56.2
Lalb_Chr18g0049791 Lupinus albus HOM05D009394 ORTHO05D002431 2.3e-06 56.2 45 60.0
MD15G1332200 Malus domestica HOM05D002917 ORTHO05D002431 2.3e-06 56.2 76 40.8
Migut.L00070 Erythranthe guttata HOM05D002917 ORTHO05D002431 3.0e-06 55.8 56 53.6
FvH4_1g22590 Fragaria vesca HOM05D002917 ORTHO05D002431 3.0e-06 55.8 74 43.2
FAN19G2300 Fragaria x ananassa HOM05D002917 ORTHO05D002431 3.0e-06 55.8 74 43.2
FAN28G1232 Fragaria x ananassa HOM05D002917 ORTHO05D002431 3.0e-06 55.8 74 43.2
MD01G1020100 Malus domestica HOM05D002917 ORTHO05D002431 3.0e-06 55.8 73 42.5
Sabra16G0168400 Salix brachista HOM05D002917 ORTHO05D002431 3.0e-06 55.8 54 50.0
Sp6g33460 Schrenkiella parvula HOM05D002917 ORTHO05D002431 3.0e-06 55.8 57 50.9
BcaB01g04859 Brassica carinata HOM05D002917 ORTHO05D002431 4.0e-06 55.5 47 59.6
CSS0004580 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 4.0e-06 55.5 63 47.6
Migut.N02378 Erythranthe guttata HOM05D009394 ORTHO05D002431 4.0e-06 55.5 50 54.0
FAN23G2482 Fragaria x ananassa HOM05D002917 ORTHO05D002431 4.0e-06 55.5 67 46.3
FAN28G1462 Fragaria x ananassa HOM05D002917 ORTHO05D002431 4.0e-06 55.5 67 46.3
Psat5g191400 Pisum sativum HOM05D009394 ORTHO05D002431 4.0e-06 55.5 60 53.3
QL06p032044 Quercus lobata HOM05D002917 ORTHO05D002431 4.0e-06 55.5 53 50.9
SalBow5G5446 Salvia bowleyana HOM05D002917 ORTHO05D002431 4.0e-06 55.5 48 58.3
Solyc04g011910.3 Solanum lycopersicum HOM05D002917 ORTHO05D002431 4.0e-06 55.5 76 43.4
Sopen04g006050 Solanum pennellii HOM05D002917 ORTHO05D002431 4.0e-06 55.5 76 43.4
TAR628G1039 Trochodendron aralioides HOM05D002917 ORTHO05D002431 4.0e-06 55.5 71 42.3
AL6G20380 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 5.2e-06 55.1 60 51.7
A10p27540 Brassica napus HOM05D002917 ORTHO05D002431 5.2e-06 55.1 64 48.4
BraA10t44806Z Brassica rapa HOM05D002917 ORTHO05D002431 5.2e-06 55.1 64 48.4
COL.COLO4_11006 Corchorus olitorius HOM05D002917 ORTHO05D002431 5.2e-06 55.1 60 50.0
Lalb_Chr12g0203511 Lupinus albus HOM05D002917 ORTHO05D002431 5.2e-06 55.1 83 43.4
Medtr3g094970 Medicago truncatula HOM05D002917 ORTHO05D002431 5.2e-06 55.1 66 43.9
Nitab4.5_0000818g0190 Nicotiana tabacum HOM05D002917 ORTHO05D002431 5.2e-06 55.1 87 40.2
Sabra07G0067800 Salix brachista HOM05D002917 ORTHO05D002431 5.2e-06 55.1 48 54.2
Sp6g24940 Schrenkiella parvula HOM05D002917 ORTHO05D002431 5.2e-06 55.1 47 59.6
TAR381G1174 Trochodendron aralioides HOM05D002917 ORTHO05D002431 5.2e-06 55.1 54 48.1
Aa31LG1G17080 Aethionema arabicum HOM05D002917 ORTHO05D002431 6.8e-06 54.7 71 47.9
BcaC04g23276 Brassica carinata HOM05D002917 ORTHO05D002431 6.8e-06 54.7 63 50.8
A09p08870 Brassica napus HOM05D002917 ORTHO05D002431 6.8e-06 54.7 63 50.8
C09p10290 Brassica napus HOM05D002917 ORTHO05D002431 6.8e-06 54.7 63 50.8
BolC9t53929H Brassica oleracea HOM05D002917 ORTHO05D002431 6.8e-06 54.7 63 50.8
BraA09t36538Z Brassica rapa HOM05D002917 ORTHO05D002431 6.8e-06 54.7 63 50.8
Gohir.A05G071850 Gossypium hirsutum HOM05D032020 ORTHO05D002431 6.8e-06 54.7 46 60.9
Lsat_1_v5_gn_4_137421 Lactuca sativa HOM05D002917 ORTHO05D002431 6.8e-06 54.7 69 44.9
Lalb_Chr08g0238811 Lupinus albus HOM05D002917 ORTHO05D002431 6.8e-06 54.7 54 50.0
Manes.12G143000 Manihot esculenta HOM05D002917 ORTHO05D002431 6.8e-06 54.7 88 39.8
Peaxi162Scf00133g01414 Petunia axillaris HOM05D002917 ORTHO05D002431 6.8e-06 54.7 73 43.8
Psat5g066200 Pisum sativum HOM05D002917 ORTHO05D002431 6.8e-06 54.7 77 45.5
Prupe.6G172200 Prunus persica HOM05D002917 ORTHO05D002431 6.8e-06 54.7 73 42.5
SGA_v2.0_scaffold2G01294 Striga asiatica HOM05D002917 ORTHO05D002431 6.8e-06 54.7 77 44.2
arahy.Tifrunner.gnm1.ann1.CBHP4D Arachis hypogaea HOM05D002917 ORTHO05D002431 8.9e-06 54.3 84 39.3
CsaV3_6G038900 Cucumis sativus L. HOM05D009394 ORTHO05D002431 8.9e-06 54.3 67 43.3
Glyma.04G219000 Glycine max HOM05D002917 ORTHO05D002431 8.9e-06 54.3 73 41.1
Nn5g28892 Nelumbo nucifera HOM05D002917 ORTHO05D002431 8.9e-06 54.3 47 55.3
TWI53G0786 Tripterygium wilfordii HOM05D002917 ORTHO05D002431 8.9e-06 54.3 55 49.1
HPP92_027833 Vanilla planifolia HOM05D002917 ORTHO05D002431 8.9e-06 54.3 48 52.1
VMungo1309G1910 Vigna mungo HOM05D002917 ORTHO05D002431 8.9e-06 54.3 72 41.7


User provided reference genes

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