Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 2.9e-67 260.4 508 100.0
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 2.9e-67 260.4 508 100.0
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 4.6e-28 130.2 125 64.0
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 1.7e-27 128.3 125 63.2
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 8.9e-24 115.9 125 56.0
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 2.0e-23 114.8 123 60.2
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 4.1e-21 107.1 123 64.2
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 1.6e-20 105.1 124 62.1
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 3.9e-19 100.5 60 81.7
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 3.9e-19 100.5 60 81.7
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 3.9e-19 100.5 125 45.6
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 6.6e-19 99.8 60 81.7
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 4.3e-18 97.1 102 52.9
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 5.6e-18 96.7 100 50.0
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 9.5e-18 95.9 123 43.1
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.6e-17 95.1 59 76.3
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 4.7e-17 93.6 119 60.5
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 6.2e-17 93.2 59 74.6
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 6.2e-17 93.2 59 74.6
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 1.1e-16 92.4 59 74.6
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.4e-16 92.0 58 77.6
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 1.8e-16 91.7 60 75.0
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 1.8e-16 91.7 125 50.4
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 3.1e-16 90.9 61 70.5
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 4.0e-16 90.5 59 72.9
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 1.2e-15 89.0 60 71.7
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 1.2e-15 89.0 59 74.6
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 1.5e-15 88.6 60 75.0
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 2.0e-15 88.2 61 72.1
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 3.4e-15 87.4 125 49.6
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 5.8e-15 86.7 58 70.7
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 7.5e-15 86.3 61 68.9
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 1.3e-14 85.5 125 49.6
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.3e-14 85.5 125 49.6
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 1.3e-14 85.5 60 70.0
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 1.7e-14 85.1 60 68.3
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 2.2e-14 84.7 60 68.3
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 2.2e-14 84.7 60 71.7
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 3.7e-14 84.0 61 63.9
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 3.7e-14 84.0 60 61.7
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 4.9e-14 83.6 60 68.3
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 1.1e-13 82.4 61 63.9
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 1.4e-13 82.0 58 70.7
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 1.9e-13 81.6 55 67.3
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 1.9e-13 81.6 60 61.7
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 3.2e-13 80.9 60 60.0
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 4.1e-13 80.5 61 67.2
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 4.1e-13 80.5 60 60.0
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 5.4e-13 80.1 60 68.3
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 5.4e-13 80.1 60 61.7
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 9.2e-13 79.3 60 60.0
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 9.2e-13 79.3 60 65.0
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 9.2e-13 79.3 46 78.3
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 2.1e-12 78.2 59 67.8
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 2.1e-12 78.2 60 60.0
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 2.7e-12 77.8 59 64.4
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 2.7e-12 77.8 60 63.3
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 3.5e-12 77.4 60 61.7
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 4.6e-12 77.0 61 63.9
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 7.8e-12 76.3 60 58.3
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 1.7e-11 75.1 61 52.5
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 2.3e-11 74.7 59 61.0
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 3.9e-11 73.9 60 61.7
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 3.9e-11 73.9 61 62.3
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 1.1e-10 72.4 56 62.5
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 1.1e-10 72.4 56 62.5
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 1.1e-10 72.4 56 62.5
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 1.1e-10 72.4 56 60.7
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 1.5e-10 72.0 56 64.3
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 1.5e-10 72.0 61 63.9
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 1.9e-10 71.6 56 62.5
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 1.9e-10 71.6 56 62.5
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 1.9e-10 71.6 231 58.0
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 1.9e-10 71.6 60 60.0
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 2.5e-10 71.2 55 63.6
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 3.3e-10 70.9 61 60.7
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 3.3e-10 70.9 59 61.0
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 3.3e-10 70.9 59 61.0
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 5.6e-10 70.1 62 59.7
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 7.3e-10 69.7 122 37.7
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 9.5e-10 69.3 58 55.2
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 1.2e-09 68.9 61 57.4
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 1.2e-09 68.9 55 60.0
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 1.6e-09 68.6 55 58.2
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 1.6e-09 68.6 59 57.6
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 1.6e-09 68.6 59 61.0
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 2.1e-09 68.2 50 62.0
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 2.1e-09 68.2 55 50.9
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 3.6e-09 67.4 56 53.6
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 3.6e-09 67.4 61 57.4
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 6.2e-09 66.6 59 54.2
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 6.2e-09 66.6 59 57.6
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 6.2e-09 66.6 59 57.6
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 8.1e-09 66.2 48 64.6
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.1e-08 65.9 47 66.0
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 1.1e-08 65.9 125 30.4
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 1.8e-08 65.1 58 51.7
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 3.1e-08 64.3 59 52.5
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 1.5e-07 62.0 58 51.7
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 1.5e-07 62.0 52 51.9
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 2.6e-07 61.2 61 50.8
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 5.8e-07 60.1 46 67.4
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 9.9e-07 59.3 56 48.2
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 3.7e-06 57.4 59 50.8
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 3.7e-06 57.4 59 50.8


User provided reference genes

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