Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 3.7e-165 584.7 277 100.0
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.6e-128 463.0 261 85.4
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.7e-128 461.5 261 85.4
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 8.3e-117 424.1 261 78.5
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.5e-113 413.3 261 76.2
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 2.0e-110 402.9 261 74.3
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 5.8e-110 401.4 261 73.6
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 4.9e-109 398.3 261 73.2
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 6.4e-109 397.9 261 72.8
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 1.1e-108 397.1 261 73.2
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 3.2e-108 395.6 261 71.3
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 1.6e-107 393.3 260 70.8
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 3.5e-107 392.1 260 71.9
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 1.0e-106 390.6 261 70.9
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 1.3e-106 390.2 259 72.6
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 1.7e-106 389.8 261 69.7
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 5.1e-106 388.3 260 71.5
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 6.6e-106 387.9 258 71.3
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 6.6e-106 387.9 261 71.6
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 6.6e-106 387.9 267 72.3
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.1e-105 387.1 261 69.7
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 1.1e-105 387.1 261 70.1
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 1.5e-105 386.7 264 68.9
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 4.3e-105 385.2 261 70.1
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 4.3e-105 385.2 261 69.3
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 5.6e-105 384.8 261 69.7
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 7.3e-105 384.4 261 69.3
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 9.5e-105 384.0 260 68.8
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 9.5e-105 384.0 261 69.3
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 9.5e-105 384.0 258 70.5
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 9.5e-105 384.0 261 69.3
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 1.2e-104 383.6 261 69.0
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 2.1e-104 382.9 259 69.9
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 2.8e-104 382.5 261 68.2
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 2.8e-104 382.5 261 68.2
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 2.8e-104 382.5 261 69.0
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 2.8e-104 382.5 257 69.6
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 3.6e-104 382.1 261 69.7
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 8.1e-104 380.9 261 69.3
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.4e-103 380.2 258 69.4
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 2.3e-103 379.4 261 69.3
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 5.2e-103 378.3 261 69.0
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 5.2e-103 378.3 261 67.4
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 5.2e-103 378.3 261 69.7
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 6.8e-103 377.9 261 67.8
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 8.9e-103 377.5 261 71.3
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 1.2e-102 377.1 260 68.5
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 2.6e-102 375.9 261 69.0
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 3.4e-102 375.6 262 68.3
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 3.4e-102 375.6 261 68.6
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 4.4e-102 375.2 261 67.8
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 5.8e-102 374.8 261 67.0
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 7.6e-102 374.4 264 67.8
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 1.3e-101 373.6 261 68.2
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 1.3e-101 373.6 263 67.3
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 1.7e-101 373.2 261 69.7
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.7e-101 373.2 261 69.7
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 2.9e-101 372.5 261 67.4
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 3.7e-101 372.1 260 68.8
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 3.7e-101 372.1 266 66.5
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 3.7e-101 372.1 266 66.2
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 4.9e-101 371.7 261 67.0
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 4.9e-101 371.7 261 68.2
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 6.4e-101 371.3 261 67.4
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.1e-100 370.5 261 69.0
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 1.1e-100 370.5 261 67.0
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 2.4e-100 369.4 261 67.0
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 2.4e-100 369.4 260 68.8
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 2.4e-100 369.4 261 65.5
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 3.2e-100 369.0 261 66.7
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 4.1e-100 368.6 261 68.6
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 4.1e-100 368.6 261 66.7
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 5.4e-100 368.2 261 65.9
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 7.1e-100 367.9 261 65.9
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 1.2e-99 367.1 261 65.5
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 1.2e-99 367.1 261 66.3
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 1.6e-99 366.7 258 66.7
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 1.6e-99 366.7 261 67.0
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.1e-99 366.3 261 67.8
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.7e-99 365.9 263 68.4
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 2.7e-99 365.9 265 67.2
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 6.0e-99 364.8 261 66.3
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 6.0e-99 364.8 261 65.9
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 7.8e-99 364.4 261 65.9
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 1.3e-98 363.6 261 65.5
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 3.0e-98 362.5 261 65.9
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 3.9e-98 362.1 261 65.1
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 8.6e-98 360.9 261 65.5
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 8.6e-98 360.9 261 65.9
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 1.1e-97 360.5 256 68.4
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 1.1e-97 360.5 363 54.0
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 1.5e-97 360.1 261 65.1
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 1.5e-97 360.1 261 67.8
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 3.3e-97 359.0 261 65.5
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 3.3e-97 359.0 268 65.3
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 4.3e-97 358.6 261 65.5
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 4.3e-97 358.6 261 68.6
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 5.6e-97 358.2 262 64.1
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 7.3e-97 357.8 261 64.0
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 7.3e-97 357.8 261 65.5
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 7.3e-97 357.8 260 64.6
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 1.6e-96 356.7 261 67.0
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 2.8e-96 355.9 261 64.8
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 6.2e-96 354.8 261 65.1
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 6.2e-96 354.8 261 65.1
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 3.1e-95 352.4 261 65.5
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 5.8e-94 348.2 268 61.9
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 3.9e-90 335.5 260 61.9
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 1.5e-89 333.6 261 63.6
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 9.6e-89 330.9 258 61.6
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 1.3e-88 330.5 260 63.1
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 4.8e-88 328.6 260 62.7
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 6.2e-88 328.2 261 62.8
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 6.2e-88 328.2 261 59.8
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 9.0e-87 324.3 261 61.7
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 2.0e-86 323.2 258 60.9
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 3.8e-85 318.9 261 59.0
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 4.9e-85 318.5 258 59.7
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.3e-82 309.7 261 59.4
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.1e-81 307.4 271 58.3
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 7.4e-81 304.7 230 63.9
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 9.6e-81 304.3 262 58.4
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 2.8e-80 302.8 261 58.2
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 3.0e-74 282.7 261 55.6
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 6.7e-74 281.6 260 51.2
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 6.7e-66 255.0 167 70.1
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 2.5e-65 253.1 261 50.2
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 5.7e-65 251.9 251 54.6
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 5.1e-58 228.8 157 66.9
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 4.5e-54 215.7 167 60.5
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 2.1e-51 206.8 248 44.8
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 3.3e-49 199.5 201 48.3
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 8.5e-45 184.9 285 40.7
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 2.6e-41 173.3 151 53.0
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 6.1e-35 152.1 165 50.3
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 3.7e-32 142.9 95 70.5
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 2.1e-27 127.1 90 66.7
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 3.7e-24 116.3 116 50.9
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 4.5e-22 109.4 67 76.1
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 6.5e-21 105.5 79 62.0
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 3.0e-10 70.1 56 57.1
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 1.4e-07 61.2 57 49.1


User provided reference genes

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