Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 5.3e-259 897.1 435 100.0
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.0e-145 520.8 461 61.4
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 6.6e-145 518.1 458 62.0
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 2.5e-144 516.2 456 61.0
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 6.7e-129 464.9 462 56.3
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 4.0e-126 455.7 447 58.2
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 7.6e-125 451.4 449 58.6
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 6.3e-119 431.8 392 59.7
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.5e-99 367.5 462 46.8
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 7.2e-99 365.2 462 47.0
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.2e-98 364.4 496 45.2
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 1.8e-97 360.5 439 47.8
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 8.5e-92 341.7 467 44.1
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 4.7e-90 335.9 494 44.3
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 1.3e-87 327.8 460 43.3
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 1.3e-87 327.8 460 43.3
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 6.3e-87 325.5 496 42.5
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 3.1e-86 323.2 459 42.5
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 3.7e-79 299.7 461 43.2
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 4.9e-79 299.3 461 42.1
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 1.0e-76 291.6 411 42.3
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 1.0e-76 291.6 456 41.7
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 2.9e-76 290.0 463 38.9
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 5.0e-76 289.3 528 38.4
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 3.3e-75 286.6 406 43.1
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 3.3e-75 286.6 411 42.8
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 4.2e-75 286.2 375 45.3
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 4.7e-74 282.7 430 41.6
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 5.2e-73 279.3 469 39.2
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 5.2e-73 279.3 471 39.7
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 8.9e-73 278.5 371 44.2
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 1.2e-72 278.1 376 45.5
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 3.4e-72 276.6 413 41.9
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 3.4e-72 276.6 462 40.7
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 9.8e-72 275.0 450 40.7
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 3.7e-71 273.1 447 40.0
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 1.6e-69 267.7 406 41.1
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 2.0e-69 267.3 403 41.2
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 2.7e-69 266.9 461 40.6
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 1.7e-68 264.2 477 39.0
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 1.5e-67 261.2 451 39.7
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.5e-67 261.2 468 38.7
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 1.9e-67 260.8 468 38.7
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 1.9e-67 260.8 431 39.9
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 7.3e-67 258.8 446 37.4
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 1.2e-66 258.1 482 37.1
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 2.1e-66 257.3 468 38.0
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 2.1e-66 257.3 469 37.7
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 2.8e-66 256.9 394 39.6
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 8.0e-66 255.4 373 42.6
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 1.0e-65 255.0 433 38.6
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 4.0e-65 253.1 445 37.5
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 1.5e-64 251.1 368 42.4
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 5.8e-64 249.2 435 37.9
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 2.2e-63 247.3 446 37.9
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 2.9e-63 246.9 486 35.6
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 8.3e-63 245.4 398 40.2
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 1.1e-62 245.0 457 36.5
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 1.4e-62 244.6 446 36.1
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 2.4e-62 243.8 374 40.9
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 3.2e-62 243.4 418 38.8
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 4.1e-62 243.0 408 40.0
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 9.2e-62 241.9 419 38.4
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.3e-60 238.0 373 41.3
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 1.3e-60 238.0 463 36.1
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 1.7e-60 237.7 368 41.6
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 8.6e-60 235.3 446 37.2
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 1.1e-59 235.0 450 36.2
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 2.5e-59 233.8 425 38.4
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 9.5e-59 231.9 448 37.3
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 3.6e-58 229.9 255 46.7
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 3.6e-58 229.9 469 36.0
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 8.1e-58 228.8 373 40.2
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.1e-57 228.4 373 40.2
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 1.4e-57 228.0 411 35.8
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 5.2e-57 226.1 430 37.9
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 4.4e-56 223.0 443 34.8
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.7e-55 221.1 453 36.4
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 2.9e-55 220.3 261 44.4
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 3.7e-55 219.9 458 34.9
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 1.1e-54 218.4 402 37.6
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 1.6e-53 214.5 491 33.2
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 4.6e-53 213.0 410 35.4
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.3e-52 211.5 452 36.1
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 4.3e-51 206.5 406 34.7
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 5.6e-51 206.1 367 37.3
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 1.2e-50 204.9 458 34.3
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 8.9e-49 198.7 403 34.2
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 2.6e-48 197.2 313 37.7
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 2.6e-48 197.2 413 33.9
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 2.2e-47 194.1 482 33.6
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 1.4e-46 191.4 373 37.0
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.1e-46 189.9 373 36.7
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 9.2e-46 188.7 250 41.6
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 1.3e-44 184.9 422 32.0
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 1.6e-42 177.9 467 31.5
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 1.6e-42 177.9 303 38.9
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 4.7e-42 176.4 445 33.0
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 6.2e-42 176.0 354 37.6
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 1.5e-40 171.4 290 39.3
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 2.2e-39 167.5 456 32.7
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 3.8e-39 166.8 265 37.7
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 7.1e-38 162.5 252 40.9
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 2.7e-37 160.6 307 34.5
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 7.3e-35 152.5 385 31.7
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 8.1e-34 149.1 388 31.2
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 1.1e-33 148.7 377 30.2
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 1.4e-33 148.3 338 33.1
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 2.4e-33 147.5 384 32.8
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 4.0e-33 146.7 336 34.8
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 9.0e-33 145.6 481 30.8
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 2.0e-32 144.4 266 35.3
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 9.9e-32 142.1 417 29.0
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.9e-30 137.9 276 31.5
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 1.6e-29 134.8 339 31.6
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 1.7e-28 131.3 320 33.8
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 6.6e-28 129.4 259 33.6
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 1.5e-27 128.3 189 41.3
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 1.5e-27 128.3 116 56.0
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 1.6e-26 124.8 188 42.0
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 2.1e-26 124.4 189 40.7
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 2.8e-26 124.0 189 41.3
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 3.6e-26 123.6 187 37.4
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 3.6e-26 123.6 189 41.3
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 4.8e-26 123.2 189 41.3
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 2.4e-25 120.9 190 39.5
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 4.0e-25 120.2 176 38.6
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 4.0e-25 120.2 176 38.6
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 5.3e-25 119.8 180 41.7
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 2.6e-24 117.5 187 37.4
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 5.8e-24 116.3 187 36.9
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 5.8e-24 116.3 187 36.9
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 7.6e-24 115.9 191 39.8
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 5.1e-20 103.2 191 36.1
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 1.5e-19 101.7 144 40.3
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 2.1e-18 97.8 159 37.1
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 6.2e-18 96.3 170 35.3
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 6.2e-18 96.3 170 35.3
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 1.4e-17 95.1 119 45.4
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 4.0e-17 93.6 152 36.8
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 1.5e-16 91.7 230 31.3
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.6e-16 90.9 168 35.1
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 8.4e-15 85.9 189 31.7
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.9e-14 84.7 170 31.2
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 5.1e-12 76.6 208 26.0
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 4.3e-11 73.6 110 40.9
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 5.7e-11 73.2 217 22.1
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 9.6e-11 72.4 53 64.2
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 1.5e-08 65.1 50 58.0
Carub.0003s3352 Capsella rubella HOM05D003999 ORTHO05D005219 7.6e-08 62.8 79 41.8
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 1.3e-07 62.0 53 52.8
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 8.4e-07 59.3 47 55.3


User provided reference genes

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