Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.3e-49 199.5 105 100.0
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 1.1e-29 133.3 80 88.8
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 9.7e-26 120.2 82 82.9
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 3.1e-24 115.2 107 68.2
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 3.5e-23 111.7 91 72.5
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.0e-22 110.2 67 88.1
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 2.9e-22 108.6 80 76.2
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 5.0e-22 107.8 80 76.2
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 5.0e-22 107.8 80 76.2
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.1e-21 106.7 80 76.2
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 2.5e-21 105.5 80 75.0
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 3.2e-21 105.1 81 74.1
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 3.2e-21 105.1 80 73.8
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 9.4e-21 103.6 81 70.4
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 1.6e-20 102.8 64 85.9
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 2.1e-20 102.4 86 72.1
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 2.7e-20 102.1 80 72.5
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 6.1e-20 100.9 80 71.2
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 1.4e-19 99.8 105 61.0
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 1.4e-19 99.8 83 69.9
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.8e-19 99.4 80 71.2
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.8e-19 99.4 80 71.2
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 1.8e-19 99.4 80 71.2
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 4.0e-19 98.2 80 73.8
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 4.0e-19 98.2 83 69.9
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 8.8e-19 97.1 79 70.9
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 1.2e-18 96.7 101 62.4
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 1.5e-18 96.3 96 63.5
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 2.0e-18 95.9 80 70.0
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 3.4e-18 95.1 85 67.1
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.4e-18 95.1 85 67.1
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.4e-18 95.1 85 67.1
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.4e-18 95.1 80 66.2
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.4e-18 94.7 73 72.6
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 5.7e-18 94.4 85 67.1
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 5.7e-18 94.4 109 56.9
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.3e-17 93.2 85 65.9
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 2.8e-17 92.0 80 66.2
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.7e-17 91.7 85 64.7
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 8.3e-17 90.5 81 66.7
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 1.1e-16 90.1 80 68.8
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 1.1e-16 90.1 81 69.1
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 1.4e-16 89.7 80 66.2
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 1.8e-16 89.4 80 65.0
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 2.4e-16 89.0 79 70.9
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 4.1e-16 88.2 86 64.0
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 7.0e-16 87.4 80 65.0
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 7.0e-16 87.4 67 71.6
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 7.0e-16 87.4 82 70.7
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 7.0e-16 87.4 79 64.6
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 7.0e-16 87.4 82 65.9
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 1.2e-15 86.7 80 67.5
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.2e-15 86.7 62 72.6
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 2.0e-15 85.9 81 64.2
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 2.0e-15 85.9 81 64.2
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 2.0e-15 85.9 81 64.2
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 2.0e-15 85.9 80 62.5
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 2.7e-15 85.5 81 64.2
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 2.7e-15 85.5 81 64.2
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 7.7e-15 84.0 79 62.0
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 7.7e-15 84.0 79 62.0
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 1.0e-14 83.6 82 67.1
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 1.3e-14 83.2 80 61.2
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 2.9e-14 82.0 65 73.8
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 3.8e-14 81.6 81 60.5
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.5e-14 80.9 79 59.5
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 1.1e-13 80.1 80 58.8
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 1.9e-13 79.3 84 61.9
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 3.2e-13 78.6 84 61.9
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 4.2e-13 78.2 82 59.8
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 1.2e-12 76.6 81 55.6
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 4.7e-12 74.7 81 60.5
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 4.7e-12 74.7 81 60.5
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 4.7e-12 74.7 83 59.0
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 6.1e-12 74.3 80 55.0
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 8.0e-12 73.9 129 45.7
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 8.0e-12 73.9 79 58.2
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 1.8e-11 72.8 86 59.3
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 2.3e-11 72.4 83 54.2
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 3.0e-11 72.0 67 64.2
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 4.0e-11 71.6 82 54.9
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 2.6e-10 68.9 80 51.2
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 3.4e-10 68.6 59 62.7
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 4.4e-10 68.2 92 52.2
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 3.7e-09 65.1 91 51.6
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 3.7e-09 65.1 81 51.9
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 4.9e-09 64.7 94 50.0
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 6.3e-09 64.3 82 50.0
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 8.3e-09 63.9 100 50.0
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 1.4e-08 63.2 82 51.2
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 1.8e-08 62.8 100 50.0
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 2.0e-07 59.3 59 62.7
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 2.7e-07 58.9 83 49.4
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 3.5e-07 58.5 107 44.9
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 7.7e-07 57.4 86 48.8
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 7.7e-07 57.4 83 48.2
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 1.7e-06 56.2 82 47.6
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 1.7e-06 56.2 110 45.5
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 2.3e-06 55.8 72 51.4
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 2.3e-06 55.8 41 73.2


User provided reference genes

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