Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 2.2e-134 482.3 242 100.0
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 1.2e-114 416.8 252 87.3
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 4.6e-111 404.8 242 83.5
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 4.6e-103 378.3 242 78.9
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 3.6e-100 368.6 242 77.7
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 1.1e-99 367.1 242 76.0
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 2.3e-99 365.9 242 76.9
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 4.0e-99 365.2 239 78.7
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 1.2e-98 363.6 242 73.1
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 4.4e-98 361.7 242 78.1
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 7.6e-98 360.9 242 74.8
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 7.6e-98 360.9 242 76.4
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 9.9e-98 360.5 242 73.6
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 2.9e-97 359.0 221 79.6
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 2.9e-97 359.0 242 76.0
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 1.6e-95 353.2 242 75.6
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 2.1e-95 352.8 242 75.6
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 6.0e-95 351.3 242 71.5
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 6.0e-95 351.3 242 71.5
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 7.8e-95 350.9 242 71.5
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 7.8e-95 350.9 217 80.6
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 1.7e-94 349.7 238 76.5
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 2.3e-94 349.4 228 76.8
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 3.9e-94 348.6 242 74.0
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 8.6e-94 347.4 242 75.2
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 1.1e-93 347.1 214 77.1
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 1.1e-93 347.1 242 72.7
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 2.5e-93 345.9 242 72.7
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 3.3e-93 345.5 242 72.3
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 9.6e-93 344.0 242 73.1
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 1.6e-92 343.2 242 71.1
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 2.1e-92 342.8 231 74.9
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 2.8e-92 342.4 242 72.3
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 4.7e-92 341.7 243 72.8
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 6.2e-92 341.3 239 71.1
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 1.1e-91 340.5 225 78.7
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 6.8e-91 337.8 243 70.8
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 8.9e-91 337.4 224 73.2
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 1.2e-90 337.0 242 71.9
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 1.2e-90 337.0 242 71.1
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 1.5e-90 336.7 224 73.2
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 5.8e-90 334.7 233 70.8
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 7.6e-90 334.3 243 71.6
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.3e-89 333.6 245 71.0
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 1.7e-89 333.2 250 69.2
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.7e-89 333.2 238 70.6
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 1.7e-89 333.2 226 73.5
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 2.2e-89 332.8 244 70.1
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 2.9e-89 332.4 241 74.3
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 3.8e-89 332.0 242 70.2
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 6.4e-89 331.3 221 73.8
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 8.4e-89 330.9 242 72.3
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 1.1e-88 330.5 266 65.8
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 1.1e-88 330.5 221 74.2
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 1.1e-88 330.5 242 69.8
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 4.2e-88 328.6 221 71.9
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 7.1e-88 327.8 242 68.6
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 9.3e-88 327.4 243 72.0
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 1.6e-87 326.6 243 70.0
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 6.0e-87 324.7 242 70.7
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 7.8e-87 324.3 242 69.8
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.7e-86 323.2 240 70.8
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 3.0e-86 322.4 246 67.1
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 3.9e-86 322.0 221 73.8
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 3.9e-86 322.0 242 66.1
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 5.1e-86 321.6 243 68.3
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 6.6e-86 321.2 220 71.4
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 6.6e-86 321.2 246 65.9
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 8.7e-86 320.9 243 67.1
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 8.7e-86 320.9 244 68.4
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 1.1e-85 320.5 243 67.5
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 1.9e-85 319.7 188 81.4
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 1.9e-85 319.7 240 70.4
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 4.3e-85 318.5 241 68.0
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 5.6e-85 318.2 244 68.9
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 7.3e-85 317.8 242 67.4
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 7.3e-85 317.8 228 71.5
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 2.1e-84 316.2 214 72.0
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 2.1e-84 316.2 242 64.9
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 3.6e-84 315.5 243 66.7
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 8.1e-84 314.3 243 66.7
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 8.1e-84 314.3 243 66.7
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 8.1e-84 314.3 240 69.2
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 1.1e-83 313.9 243 67.1
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 1.1e-83 313.9 306 57.8
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 1.4e-83 313.5 243 66.7
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 3.1e-83 312.4 222 73.0
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 4.0e-83 312.0 258 65.9
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 1.2e-82 310.5 188 77.1
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 1.5e-82 310.1 188 77.7
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.5e-82 310.1 261 65.1
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 2.0e-82 309.7 254 61.8
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 2.0e-82 309.7 221 71.0
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 2.6e-82 309.3 191 76.4
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 3.4e-82 308.9 241 66.4
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 3.4e-82 308.9 213 69.0
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 7.6e-82 307.8 188 76.6
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 7.6e-82 307.8 188 76.1
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 4.9e-81 305.1 243 65.8
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 6.4e-81 304.7 362 49.7
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 1.1e-80 303.9 194 72.2
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 7.1e-80 301.2 239 62.8
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 2.1e-79 299.7 244 62.3
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 3.5e-79 298.9 243 62.6
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 7.9e-79 297.7 242 64.0
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 3.9e-78 295.4 258 62.8
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 8.7e-78 294.3 163 87.7
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 2.1e-76 289.7 223 66.8
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 4.8e-76 288.5 243 65.0
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 6.9e-75 284.6 189 70.4
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 3.8e-73 278.9 179 74.3
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 4.9e-73 278.5 186 74.2
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 6.4e-73 278.1 205 67.8
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 9.3e-72 274.2 185 75.7
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 1.6e-71 273.5 242 57.9
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 3.5e-71 272.3 165 78.8
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 2.0e-66 256.5 186 61.3
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 4.5e-66 255.4 183 60.7
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 3.2e-64 249.2 232 52.6
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 8.2e-60 234.6 182 59.3
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 1.8e-54 216.9 182 56.6
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 6.9e-51 204.9 131 71.0
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 4.3e-45 185.7 104 84.6
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 7.4e-45 184.9 127 67.7
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 1.4e-43 180.6 104 80.8
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 2.4e-43 179.9 123 73.2
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 6.5e-25 118.6 77 68.8
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 5.5e-24 115.5 166 40.4
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 2.1e-23 113.6 224 29.9
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 8.0e-23 111.7 239 27.2
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 1.2e-21 107.8 180 28.3
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 1.2e-21 107.8 183 29.5
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 2.6e-21 106.7 182 28.0
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 4.4e-21 105.9 61 82.0
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 1.3e-20 104.4 201 29.4
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 1.7e-20 104.0 180 30.0
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 2.8e-20 103.2 177 29.4
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 3.7e-20 102.8 181 26.5
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 1.1e-19 101.3 221 29.4
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 1.8e-19 100.5 181 29.8
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 3.1e-19 99.8 183 27.9
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 4.1e-19 99.4 164 29.9
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 4.1e-19 99.4 184 27.7
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 7.7e-18 95.1 178 26.4
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 1.0e-17 94.7 178 26.4
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 1.3e-17 94.4 178 26.4
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 1.7e-17 94.0 178 27.0
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 5.0e-17 92.4 178 25.8
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 1.1e-16 91.3 185 28.6
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 1.9e-16 90.5 181 27.1
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 2.5e-16 90.1 190 26.8
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 2.5e-16 90.1 178 25.3
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 7.2e-16 88.6 183 25.1
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 1.2e-15 87.8 179 25.7
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 2.1e-15 87.0 178 25.3
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 3.6e-15 86.3 183 25.1
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 6.1e-15 85.5 178 24.7
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 8.0e-15 85.1 184 27.7
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 1.8e-14 84.0 178 24.2
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 1.8e-14 84.0 178 24.2
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 2.3e-14 83.6 165 28.5
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 8.8e-14 81.6 176 23.9
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 8.8e-14 81.6 176 23.9
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 2.0e-13 80.5 178 26.4
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 2.6e-13 80.1 179 24.6
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 3.4e-13 79.7 240 27.1
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 5.7e-13 79.0 233 25.3
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 2.8e-12 76.6 182 26.9
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 3.7e-12 76.3 179 22.9
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 4.9e-12 75.9 184 27.2
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 4.1e-11 72.8 184 26.1
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 9.2e-11 71.6 178 25.3
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 2.9e-09 66.6 37 78.4
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 8.0e-07 58.5 40 72.5


User provided reference genes

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