Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016607 Camellia sinensis var. sinensis HOM05D000782 ORTHO05D000571 2.8e-48 194.9 96 100.0
Actinidia32599 Actinidia chinensis HOM05D000782 ORTHO05D000571 8.9e-34 146.7 96 74.0
vmacro02905 Vaccinium macrocarpon HOM05D000782 ORTHO05D000571 2.6e-33 145.2 96 76.0
Rhsim13G0062600 Rhododendron simsii HOM05D000782 ORTHO05D000571 2.9e-32 141.7 96 70.8
Hma1.2p1_1421F.1_g282460 Hydrangea macrophylla HOM05D000782 ORTHO05D000571 3.5e-30 134.8 96 69.8
Cc01_g15010 Coffea canephora HOM05D000782 ORTHO05D000571 7.8e-30 133.7 96 65.6
Lj2A1095G46 Lonicera japonica HOM05D000782 ORTHO05D000571 2.3e-29 132.1 96 71.9
Lsat_1_v5_gn_8_108720 Lactuca sativa HOM05D000782 ORTHO05D000571 4.7e-27 124.4 95 69.5
SalBow2G3499 Salvia bowleyana HOM05D000782 ORTHO05D000571 2.3e-26 122.1 90 64.4
HanXRQChr11g0339921 Helianthus annuus HOM05D000782 ORTHO05D000571 3.1e-26 121.7 94 68.1
Oeu050028.1 Olea europaea HOM05D000782 ORTHO05D000571 3.1e-26 121.7 96 62.5
ECA236G0449 Erigeron canadensis HOM05D000782 ORTHO05D000571 2.0e-25 119.0 95 67.4
TAR369G0987 Trochodendron aralioides HOM05D000782 ORTHO05D000571 3.4e-25 118.2 92 66.3
CAN.G1095.28 Capsicum annuum HOM05D000782 ORTHO05D000571 4.9e-24 114.4 95 58.9
Migut.N00751 Erythranthe guttata HOM05D000782 ORTHO05D000571 4.9e-24 114.4 96 55.2
DCAR_023953 Daucus carota HOM05D000782 ORTHO05D000571 8.3e-24 113.6 95 60.0
GSVIVG01024611001 Vitis vinifera HOM05D000001 ORTHO05D012572 2.4e-23 112.1 93 64.5
MSTRG.12694 Avicennia marina HOM05D000782 ORTHO05D000571 3.2e-23 111.7 94 54.3
Manes.18G126600 Manihot esculenta HOM05D000782 ORTHO05D000571 1.2e-22 109.8 90 63.3
PGSC0003DMG400030460 Solanum tuberosum HOM05D000782 ORTHO05D000571 1.6e-22 109.4 96 55.2
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 3.5e-22 108.2 73 75.3
Sopen06g033770 Solanum pennellii HOM05D000782 ORTHO05D000571 4.6e-22 107.8 96 54.2
Nn2g11061 Nelumbo nucifera HOM05D000782 ORTHO05D000571 7.8e-22 107.1 86 62.8
Solyc06g082380.3 Solanum lycopersicum HOM05D000782 ORTHO05D000571 2.3e-21 105.5 96 53.1
QL04p095962 Quercus lobata HOM05D000782 ORTHO05D000571 3.9e-21 104.8 89 59.6
QL04p095983 Quercus lobata HOM05D000782 ORTHO05D000571 3.9e-21 104.8 89 59.6
Sed0021709 Sechium edule HOM05D000782 ORTHO05D000571 5.1e-21 104.4 91 61.5
ClCG03G000180 Citrullus lanatus HOM05D000782 ORTHO05D000571 8.6e-21 103.6 91 61.5
Ciclev10002580m.g Citrus clementina HOM05D000782 ORTHO05D000571 1.5e-20 102.8 89 59.6
CsaV3_7G022830 Cucumis sativus L. HOM05D000782 ORTHO05D000571 1.5e-20 102.8 91 60.4
Oeu050030.1 Olea europaea HOM05D000782 ORTHO05D000571 1.9e-20 102.4 70 70.0
QL01p025713 Quercus lobata HOM05D000782 ORTHO05D000571 5.6e-20 100.9 89 58.4
Atru.chr1.2094 Acer truncatum HOM05D000782 ORTHO05D000571 7.3e-20 100.5 89 58.4
ClCG08G003160 Citrullus lanatus HOM05D000782 ORTHO05D000571 7.3e-20 100.5 91 58.2
MELO3C024977.2 Cucumis melo HOM05D000782 ORTHO05D000571 1.2e-19 99.8 91 58.2
MD11G1060400 Malus domestica HOM05D000782 ORTHO05D000571 1.2e-19 99.8 88 61.4
Sabra19G0130500 Salix brachista HOM05D000782 ORTHO05D000571 1.6e-19 99.4 91 58.2
Prupe.6G045600 Prunus persica HOM05D000782 ORTHO05D000571 3.6e-19 98.2 88 59.1
Sabra19G0124100 Salix brachista HOM05D000782 ORTHO05D000571 6.2e-19 97.4 91 56.0
Eucgr.K01367 Eucalyptus grandis HOM05D000782 ORTHO05D000571 1.4e-18 96.3 91 54.9
MD03G1058200 Malus domestica HOM05D000782 ORTHO05D000571 1.8e-18 95.9 88 58.0
Ah.08g215420 Amaranthus hybridus HOM05D000782 ORTHO05D000571 2.3e-18 95.5 92 50.0
Duzib168G2101 Durio zibethinus HOM05D000782 ORTHO05D000571 4.0e-18 94.7 87 58.6
Haze_24431 Corylus avellana HOM05D000782 ORTHO05D000571 6.8e-18 94.0 71 63.4
EL10Ac7g15871 Beta vulgaris HOM05D000782 ORTHO05D000571 8.9e-18 93.6 92 47.8
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 2.0e-17 92.4 97 47.4
RcHm_v2.0_Chr5g0071971 Rosa chinensis HOM05D000782 ORTHO05D000571 4.4e-17 91.3 88 58.0
MBI15_g20019_MAGBIO Magnolia biondii HOM05D000782 ORTHO05D000571 7.6e-17 90.5 90 53.3
Thecc.09G359700 Theobroma cacao HOM05D000782 ORTHO05D000571 7.6e-17 90.5 88 54.5
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 9.9e-17 90.1 92 45.7
COL.COLO4_11173 Corchorus olitorius HOM05D000782 ORTHO05D000571 1.3e-16 89.7 89 56.2
FAN21G0593 Fragaria x ananassa HOM05D000782 ORTHO05D000571 1.3e-16 89.7 89 58.4
THA.LOC104800764 Tarenaya hassleriana HOM05D000782 ORTHO05D000571 1.3e-16 89.7 91 51.6
FvH4_3g39960 Fragaria vesca HOM05D000782 ORTHO05D000571 1.7e-16 89.4 89 58.4
FAN16G3647 Fragaria x ananassa HOM05D000001 ORTHO05D012572 1.7e-16 89.4 89 58.4
Glyma.14G200600 Glycine max HOM05D000782 ORTHO05D000571 2.2e-16 89.0 92 51.1
CiPaw.13G067500 Carya illinoinensis HOM05D000782 ORTHO05D000571 3.7e-16 88.2 88 55.7
FAN25G1963 Fragaria x ananassa HOM05D000001 ORTHO05D012572 3.7e-16 88.2 89 57.3
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 4.9e-16 87.8 60 71.7
BcaC01g06019 Brassica carinata HOM05D000782 ORTHO05D000571 6.4e-16 87.4 90 50.0
C03p19910 Brassica napus HOM05D000782 ORTHO05D000571 6.4e-16 87.4 90 50.0
BolC3t14370H Brassica oleracea HOM05D000782 ORTHO05D000571 6.4e-16 87.4 90 50.0
A03p16910 Brassica napus HOM05D000782 ORTHO05D000571 8.3e-16 87.0 90 50.0
BraA03t10980Z Brassica rapa HOM05D000782 ORTHO05D000571 1.1e-15 86.7 90 50.0
AUR62009715 Chenopodium quinoa HOM05D000782 ORTHO05D000571 1.1e-15 86.7 85 48.2
Lalb_Chr10g0103661 Lupinus albus HOM05D000782 ORTHO05D000571 1.1e-15 86.7 92 53.3
Aa31LG5G6450 Aethionema arabicum HOM05D002411 ORTHO05D002564 1.4e-15 86.3 94 47.9
Thhalv10017277m.g Eutrema salsugineum HOM05D000782 ORTHO05D000571 1.9e-15 85.9 93 48.4
Psat0s2794g0120 Pisum sativum HOM05D000782 ORTHO05D000571 1.9e-15 85.9 85 52.9
Sp4g12850 Schrenkiella parvula HOM05D000782 ORTHO05D000571 1.9e-15 85.9 88 51.1
Cpa.g.sc2.336 Carica papaya HOM05D000782 ORTHO05D000571 2.4e-15 85.5 88 55.7
TPR.G25342 Trifolium pratense HOM05D000782 ORTHO05D000571 2.4e-15 85.5 92 50.0
PSO017G2384 Papaver somniferum HOM05D000782 ORTHO05D000571 4.1e-15 84.7 76 57.9
PSO170G6702 Papaver somniferum HOM05D000782 ORTHO05D000571 4.1e-15 84.7 71 60.6
AL4G25120 Arabidopsis lyrata HOM05D000782 ORTHO05D000571 1.2e-14 83.2 89 49.4
AT2G30270 Arabidopsis thaliana HOM05D000782 ORTHO05D000571 1.2e-14 83.2 86 51.2
CARHR123590 Cardamine hirsuta HOM05D000782 ORTHO05D000571 2.7e-14 82.0 86 50.0
LjContig00141g0026997 Lotus japonicus HOM05D000782 ORTHO05D000571 2.7e-14 82.0 92 47.8
Carub.0004s1143 Capsella rubella HOM05D000782 ORTHO05D000571 3.5e-14 81.6 86 50.0
Gohir.D08G221000 Gossypium hirsutum HOM05D000782 ORTHO05D000571 3.5e-14 81.6 87 52.9
Gorai.004G234700 Gossypium raimondii HOM05D000782 ORTHO05D000571 3.5e-14 81.6 87 52.9
VMungo0647G1733 Vigna mungo HOM05D000782 ORTHO05D000571 3.5e-14 81.6 88 50.0
Medtr5g074550 Medicago truncatula HOM05D000782 ORTHO05D000571 4.6e-14 81.3 93 46.2
CiPaw.14G053200 Carya illinoinensis HOM05D000782 ORTHO05D000571 6.0e-14 80.9 73 56.2
Phvul.008G250800 Phaseolus vulgaris HOM05D000782 ORTHO05D000571 6.0e-14 80.9 88 50.0
SHI19227 Sapria himalayana HOM05D000782 ORTHO05D000571 6.0e-14 80.9 93 50.5
Gohir.D03G143800 Gossypium hirsutum HOM05D000782 ORTHO05D000571 1.3e-13 79.7 95 51.6
arahy.Tifrunner.gnm1.ann1.NRMQ9K Arachis hypogaea HOM05D000782 ORTHO05D000571 3.0e-13 78.6 92 51.1
Medtr5g074560 Medicago truncatula HOM05D000782 ORTHO05D000571 3.9e-13 78.2 92 46.7
Gorai.003G151100 Gossypium raimondii HOM05D000782 ORTHO05D000571 1.5e-12 76.3 95 50.5
TWI79G1409 Tripterygium wilfordii HOM05D000782 ORTHO05D000571 1.2e-11 73.2 93 49.5
Dinv12248 Davidia involucrata HOM05D000782 ORTHO05D000571 4.0e-10 68.2 47 70.2
Nitab4.5_0002768g0070 Nicotiana tabacum HOM05D000782 ORTHO05D000571 1.5e-09 66.2 50 62.0
TAR623G1242 Trochodendron aralioides HOM05D000782 ORTHO05D000571 3.4e-09 65.1 47 68.1
Zm00001eb286650 Zea mays HOM05D000782 ORTHO05D000571 3.4e-09 65.1 70 47.1
TAR623G0287 Trochodendron aralioides HOM05D000782 ORTHO05D000571 7.6e-09 63.9 51 62.7
TAR623G0969 Trochodendron aralioides HOM05D000782 ORTHO05D000571 3.8e-08 61.6 49 61.2
ATR0681G158 Amborella trichopoda HOM05D000782 ORTHO05D000571 2.4e-07 58.9 76 46.1
Lj3A943G21 Lonicera japonica HOM05D000782 ORTHO05D000571 3.2e-07 58.5 73 39.7
GSVIVG01030235001 Vitis vinifera HOM05D000782 ORTHO05D000571 4.2e-07 58.2 70 44.3
Cc06_g00620 Coffea canephora HOM05D000782 ORTHO05D000571 5.4e-07 57.8 73 39.7
MD12G1182900 Malus domestica HOM05D000782 ORTHO05D000571 5.4e-07 57.8 73 39.7
AL6G10280 Arabidopsis lyrata HOM05D000782 ORTHO05D000571 1.2e-06 56.6 78 39.7
MD17G1185800 Malus domestica HOM05D000782 ORTHO05D000571 1.2e-06 56.6 47 57.4
Potri.019G126300 Populus trichocarpa HOM05D000782 ORTHO05D000571 1.2e-06 56.6 91 40.7
Prupe.6G287500 Prunus persica HOM05D000782 ORTHO05D000571 1.2e-06 56.6 73 39.7
Aa31LG1G23390 Aethionema arabicum HOM05D000782 ORTHO05D000571 1.6e-06 56.2 78 43.6
AT5G01750 Arabidopsis thaliana HOM05D000782 ORTHO05D000571 1.6e-06 56.2 76 35.5
BcaB01g06118 Brassica carinata HOM05D000782 ORTHO05D000571 1.6e-06 56.2 76 35.5
C03p00260 Brassica napus HOM05D000782 ORTHO05D000571 1.6e-06 56.2 76 35.5
BolC3t12602H Brassica oleracea HOM05D000782 ORTHO05D000571 1.6e-06 56.2 76 35.5
Carub.0006s0008 Capsella rubella HOM05D000782 ORTHO05D000571 1.6e-06 56.2 76 35.5
Thecc.09G364400 Theobroma cacao HOM05D000782 ORTHO05D000571 1.6e-06 56.2 73 37.0
GSVIVG01030237001 Vitis vinifera HOM05D000782 ORTHO05D000571 1.6e-06 56.2 70 42.9
DCAR_028905 Daucus carota HOM05D000782 ORTHO05D000571 2.1e-06 55.8 73 38.4
Thhalv10014621m.g Eutrema salsugineum HOM05D000782 ORTHO05D000571 2.1e-06 55.8 77 37.7
FvH4_6g10350 Fragaria vesca HOM05D000782 ORTHO05D000571 2.1e-06 55.8 73 39.7
FAN09G0140 Fragaria x ananassa HOM05D000782 ORTHO05D000571 2.1e-06 55.8 73 39.7
FAN14G2230 Fragaria x ananassa HOM05D000782 ORTHO05D000571 2.1e-06 55.8 73 39.7
Lj2A64T52 Lonicera japonica HOM05D000782 ORTHO05D000571 2.1e-06 55.8 73 41.1
Lalb_Chr03g0043661 Lupinus albus HOM05D000782 ORTHO05D000571 2.1e-06 55.8 75 42.7
DCAR_028903 Daucus carota HOM05D000782 ORTHO05D000571 2.7e-06 55.5 73 41.1
Duzib128G2058 Durio zibethinus HOM05D000782 ORTHO05D000571 2.7e-06 55.5 73 35.6
Lsat_1_v5_gn_9_38141 Lactuca sativa HOM05D000782 ORTHO05D000571 2.7e-06 55.5 76 36.8
Medtr7g072140 Medicago truncatula HOM05D000782 ORTHO05D000571 2.7e-06 55.5 75 44.0
Sp6g41010 Schrenkiella parvula HOM05D000782 ORTHO05D000571 2.7e-06 55.5 76 35.5
VMungo0331G0810 Vigna mungo HOM05D000782 ORTHO05D000571 2.7e-06 55.5 71 39.4
arahy.Tifrunner.gnm1.ann1.E54J1V Arachis hypogaea HOM05D000782 ORTHO05D000571 3.5e-06 55.1 73 41.1
arahy.Tifrunner.gnm1.ann1.S8EST8 Arachis hypogaea HOM05D000782 ORTHO05D000571 3.5e-06 55.1 73 41.1
C02p00070 Brassica napus HOM05D000782 ORTHO05D000571 3.5e-06 55.1 76 35.5
BraA02t04679Z Brassica rapa HOM05D000782 ORTHO05D000571 3.5e-06 55.1 76 35.5
CANSAT35G0618 Cannabis sativa HOM05D000782 ORTHO05D000571 3.5e-06 55.1 76 36.8
Ciclev10013687m.g Citrus clementina HOM05D000782 ORTHO05D000571 3.5e-06 55.1 73 38.4
DCAR_015455 Daucus carota HOM05D000782 ORTHO05D000571 3.5e-06 55.1 73 38.4
Dinv25291 Davidia involucrata HOM05D000782 ORTHO05D000571 3.5e-06 55.1 68 41.2
ECA247G3886 Erigeron canadensis HOM05D000782 ORTHO05D000571 3.5e-06 55.1 73 38.4
BcaB01g06251 Brassica carinata HOM05D000782 ORTHO05D000571 4.6e-06 54.7 71 35.2
BolC2t06005H Brassica oleracea HOM05D000782 ORTHO05D000571 4.6e-06 54.7 76 35.5
FvH4_6g10370 Fragaria vesca HOM05D000782 ORTHO05D000571 4.6e-06 54.7 84 40.5
Glyma.03G040900 Glycine max HOM05D000782 ORTHO05D000571 4.6e-06 54.7 71 36.6
SalBow5G2396 Salvia bowleyana HOM05D000782 ORTHO05D000571 4.6e-06 54.7 72 43.1
Sp3g28980 Schrenkiella parvula HOM05D000782 ORTHO05D000571 4.6e-06 54.7 76 35.5
CAN.G738.2 Capsicum annuum HOM05D000782 ORTHO05D000571 6.0e-06 54.3 73 37.0
Dinv35438 Davidia involucrata HOM05D000782 ORTHO05D000571 6.0e-06 54.3 73 39.7
Lalb_Chr12g0207501 Lupinus albus HOM05D000782 ORTHO05D000571 6.0e-06 54.3 71 36.6
Os05g0339200 Oryza sativa ssp. japonica HOM05D000782 ORTHO05D000571 6.0e-06 54.3 72 40.3
Peaxi162Scf00744g00120 Petunia axillaris HOM05D000782 ORTHO05D000571 6.0e-06 54.3 70 42.9
Actinidia29056 Actinidia chinensis HOM05D000782 ORTHO05D000571 7.8e-06 53.9 70 40.0
BcaC03g13089 Brassica carinata HOM05D000782 ORTHO05D000571 7.8e-06 53.9 76 34.2
A03p00110 Brassica napus HOM05D000782 ORTHO05D000571 7.8e-06 53.9 76 34.2
BraA03t09400Z Brassica rapa HOM05D000782 ORTHO05D000571 7.8e-06 53.9 76 34.2
CARHR212110 Cardamine hirsuta HOM05D000782 ORTHO05D000571 7.8e-06 53.9 76 34.2
Cpa.g.sc49.69 Carica papaya HOM05D000782 ORTHO05D000571 7.8e-06 53.9 76 38.2
CDE06G0912 Ceratophyllum demersum HOM05D000782 ORTHO05D000571 7.8e-06 53.9 63 50.8
FAN14G3537 Fragaria x ananassa HOM05D000782 ORTHO05D000571 7.8e-06 53.9 84 40.5
Gohir.D08G090100 Gossypium hirsutum HOM05D000782 ORTHO05D000571 7.8e-06 53.9 72 43.1
Gorai.004G095100 Gossypium raimondii HOM05D000782 ORTHO05D000571 7.8e-06 53.9 72 43.1
SEGI_38654 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 7.8e-06 53.9 78 43.6
SGA_v2.0_scaffold373G50167 Striga asiatica HOM05D000782 ORTHO05D000571 7.8e-06 53.9 72 43.1


User provided reference genes

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