Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016462 Camellia sinensis var. sinensis HOM05D001480 ORTHO05D001331 1.1e-68 263.1 127 100.0
Dinv32265 Davidia involucrata HOM05D001480 ORTHO05D001331 5.3e-26 121.3 72 84.7
Hma1.2p1_0286F.1_g114090 Hydrangea macrophylla HOM05D001480 ORTHO05D001331 1.5e-25 119.8 72 80.6
Actinidia19521 Actinidia chinensis HOM05D001480 ORTHO05D001331 2.0e-25 119.4 72 80.6
Rhsim02G0157000 Rhododendron simsii HOM05D001480 ORTHO05D001331 2.0e-25 119.4 74 77.0
Oeu052379.1 Olea europaea HOM05D001480 ORTHO05D001331 5.8e-25 117.9 72 76.4
vmacro10864 Vaccinium macrocarpon HOM05D001480 ORTHO05D001331 5.8e-25 117.9 72 77.8
MSTRG.7481 Avicennia marina HOM05D001480 ORTHO05D001331 4.9e-24 114.8 72 73.6
MSTRG.16237 Avicennia marina HOM05D001480 ORTHO05D001331 3.2e-23 112.1 71 73.2
TAR626G1672 Trochodendron aralioides HOM05D001480 ORTHO05D001331 1.2e-22 110.2 72 73.6
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 1.8e-21 106.3 72 66.7
Nitab4.5_0009607g0020 Nicotiana tabacum HOM05D001480 ORTHO05D001331 3.0e-21 105.5 72 63.9
CAN.G2602.1 Capsicum annuum HOM05D001480 ORTHO05D001331 3.9e-21 105.1 72 65.3
Solyc02g070550.3 Solanum lycopersicum HOM05D001480 ORTHO05D001331 3.9e-21 105.1 72 65.3
Sopen02g019640 Solanum pennellii HOM05D001480 ORTHO05D001331 3.9e-21 105.1 72 65.3
PGSC0003DMG400021160 Solanum tuberosum HOM05D001480 ORTHO05D001331 8.7e-21 104.0 72 63.9
Peaxi162Scf00214g01313 Petunia axillaris HOM05D001480 ORTHO05D001331 1.5e-20 103.2 72 63.9
Nitab4.5_0002275g0120 Nicotiana tabacum HOM05D001480 ORTHO05D001331 1.9e-20 102.8 72 63.9
SalBow8G5440 Salvia bowleyana HOM05D001480 ORTHO05D001331 2.5e-20 102.4 72 69.4
Manes.15G121100 Manihot esculenta HOM05D001480 ORTHO05D001331 3.3e-20 102.1 72 66.7
CiPaw.09G124800 Carya illinoinensis HOM05D001480 ORTHO05D001331 4.3e-20 101.7 72 69.4
DCAR_027920 Daucus carota HOM05D001480 ORTHO05D001331 4.3e-20 101.7 71 71.8
Migut.M00917 Erythranthe guttata HOM05D001480 ORTHO05D001331 5.7e-20 101.3 72 63.9
Nn3g20738 Nelumbo nucifera HOM05D001480 ORTHO05D001331 7.4e-20 100.9 72 66.7
Cc09_g09470 Coffea canephora HOM05D001480 ORTHO05D001331 9.7e-20 100.5 72 65.3
Atru.chr10.1252 Acer truncatum HOM05D001480 ORTHO05D001331 1.3e-19 100.1 72 69.4
Ciclev10015602m.g Citrus clementina HOM05D001480 ORTHO05D001331 2.2e-19 99.4 72 66.7
GSVIVG01021437001 Vitis vinifera HOM05D001480 ORTHO05D001331 2.2e-19 99.4 72 65.3
CANSAT35G0988 Cannabis sativa HOM05D001480 ORTHO05D001331 1.1e-18 97.1 72 66.7
Cpa.g.sc166.15 Carica papaya HOM05D001480 ORTHO05D001331 1.5e-17 93.2 70 65.7
Eucgr.D00299 Eucalyptus grandis HOM05D001480 ORTHO05D001331 1.5e-17 93.2 72 58.3
HanXRQChr04g0118591 Helianthus annuus HOM05D001480 ORTHO05D001331 1.5e-17 93.2 72 59.7
Potri.011G080700 Populus trichocarpa HOM05D001480 ORTHO05D001331 2.0e-17 92.8 72 63.9
Gohir.A06G197100 Gossypium hirsutum HOM05D001480 ORTHO05D001331 2.6e-17 92.4 72 62.5
Gorai.010G238700 Gossypium raimondii HOM05D001480 ORTHO05D001331 3.4e-17 92.0 72 62.5
Prupe.4G079700 Prunus persica HOM05D001480 ORTHO05D001331 4.5e-17 91.7 72 62.5
Haze_05584 Corylus avellana HOM05D001480 ORTHO05D001331 5.9e-17 91.3 72 62.5
Gohir.D10G041000 Gossypium hirsutum HOM05D001480 ORTHO05D001331 5.9e-17 91.3 71 63.4
Gorai.011G043200 Gossypium raimondii HOM05D001480 ORTHO05D001331 5.9e-17 91.3 71 63.4
QL05p058511 Quercus lobata HOM05D001480 ORTHO05D001331 5.9e-17 91.3 72 61.1
Gohir.A10G040100 Gossypium hirsutum HOM05D001480 ORTHO05D001331 7.6e-17 90.9 71 63.4
Gohir.D06G204600 Gossypium hirsutum HOM05D001480 ORTHO05D001331 1.0e-16 90.5 72 59.7
Sabra11G0067400 Salix brachista HOM05D001480 ORTHO05D001331 1.0e-16 90.5 72 61.1
Sc05g0006240 Simmondsia chinensis HOM05D001480 ORTHO05D001331 1.3e-16 90.1 72 59.7
Lsat_1_v5_gn_7_29840 Lactuca sativa HOM05D001480 ORTHO05D001331 2.2e-16 89.4 72 56.9
Thecc.06G151700 Theobroma cacao HOM05D001480 ORTHO05D001331 2.9e-16 89.0 72 62.5
ECA236G0367 Erigeron canadensis HOM05D001480 ORTHO05D001331 5.0e-16 88.2 72 55.6
MBI10_g02214_MAGBIO Magnolia biondii HOM05D001480 ORTHO05D001331 5.0e-16 88.2 72 59.7
Sabra11G0069600 Salix brachista HOM05D001480 ORTHO05D001331 5.0e-16 88.2 72 59.7
Duzib192G0031 Durio zibethinus HOM05D001480 ORTHO05D001331 1.9e-15 86.3 72 56.9
Aqoxy1G01715 Aquilegia oxysepala HOM05D001480 ORTHO05D001331 3.2e-15 85.5 72 52.8
MD10G1263100 Malus domestica HOM05D001480 ORTHO05D001331 4.2e-15 85.1 72 58.3
ClCG01G024560 Citrullus lanatus HOM05D001480 ORTHO05D001331 5.5e-15 84.7 72 55.6
unitig_578.g15991 Utricularia gibba HOM05D001480 ORTHO05D001331 5.5e-15 84.7 71 57.7
TWI73G0878 Tripterygium wilfordii HOM05D001480 ORTHO05D001331 2.1e-14 82.8 68 60.3
TWI53G0992 Tripterygium wilfordii HOM05D001480 ORTHO05D001331 3.6e-14 82.0 68 60.3
CsaV3_6G051680 Cucumis sativus L. HOM05D001480 ORTHO05D001331 1.0e-13 80.5 72 54.2
FvH4_3g05711 Fragaria vesca HOM05D001480 ORTHO05D001331 1.4e-13 80.1 72 55.6
AL8G12200 Arabidopsis lyrata HOM05D001480 ORTHO05D001331 1.8e-13 79.7 69 58.0
MD05G1284700 Malus domestica HOM05D001480 ORTHO05D001331 3.0e-13 79.0 72 55.6
MELO3C007139.2 Cucumis melo HOM05D001480 ORTHO05D001331 3.9e-13 78.6 72 54.2
BraA09t37825Z Brassica rapa HOM05D001480 ORTHO05D001331 5.1e-13 78.2 69 56.5
PGR083G0332 Punica granatum HOM05D001480 ORTHO05D001331 5.1e-13 78.2 61 62.3
Thhalv10000879m.g Eutrema salsugineum HOM05D001480 ORTHO05D001331 6.7e-13 77.8 101 44.6
RcHm_v2.0_Chr5g0013961 Rosa chinensis HOM05D001480 ORTHO05D001331 6.7e-13 77.8 72 55.6
VMungo0540G0492 Vigna mungo HOM05D001480 ORTHO05D001331 6.7e-13 77.8 72 58.3
Glyma.15G094800 Glycine max HOM05D001480 ORTHO05D001331 8.8e-13 77.4 72 56.9
PSO675G6419 Papaver somniferum HOM05D001480 ORTHO05D001331 8.8e-13 77.4 73 56.2
PSO541G4614 Papaver somniferum HOM05D001480 ORTHO05D001331 1.1e-12 77.0 73 56.2
CARHR175530 Cardamine hirsuta HOM05D001480 ORTHO05D001331 1.5e-12 76.6 97 42.3
FAN21G3410 Fragaria x ananassa HOM05D001480 ORTHO05D001331 1.5e-12 76.6 72 55.6
FAN25G1775 Fragaria x ananassa HOM05D001480 ORTHO05D001331 1.5e-12 76.6 72 55.6
Carub.0008s0165 Capsella rubella HOM05D001480 ORTHO05D001331 1.9e-12 76.3 69 56.5
FvH4_3g05700 Fragaria vesca HOM05D001480 ORTHO05D001331 1.9e-12 76.3 72 54.2
FAN11G3853 Fragaria x ananassa HOM05D001480 ORTHO05D001331 1.9e-12 76.3 72 54.2
AT5G46250 Arabidopsis thaliana HOM05D001480 ORTHO05D001331 2.5e-12 75.9 61 59.0
THA.LOC104827722 Tarenaya hassleriana HOM05D001480 ORTHO05D001331 2.5e-12 75.9 70 55.7
Lj6g0010522 Lotus japonicus HOM05D001480 ORTHO05D001331 3.3e-12 75.5 72 55.6
BcaB07g30845 Brassica carinata HOM05D001480 ORTHO05D001331 4.3e-12 75.1 69 53.6
Glyma.13G217600 Glycine max HOM05D001480 ORTHO05D001331 4.3e-12 75.1 73 57.5
Phvul.006G164000 Phaseolus vulgaris HOM05D001480 ORTHO05D001331 4.3e-12 75.1 72 56.9
A09p22210 Brassica napus HOM05D001480 ORTHO05D001331 5.7e-12 74.7 69 52.2
Sed0002812 Sechium edule HOM05D001480 ORTHO05D001331 5.7e-12 74.7 72 50.0
BcaC04g21712 Brassica carinata HOM05D001480 ORTHO05D001331 9.7e-12 73.9 69 53.6
C09p28370 Brassica napus HOM05D001480 ORTHO05D001331 9.7e-12 73.9 69 53.6
BolC9t55713H Brassica oleracea HOM05D001480 ORTHO05D001331 9.7e-12 73.9 69 53.6
Sp2g11120 Schrenkiella parvula HOM05D001480 ORTHO05D001331 1.3e-11 73.6 69 53.6
BolC7t43498H Brassica oleracea HOM05D001480 ORTHO05D001331 2.2e-11 72.8 69 53.6
BraA06t27468Z Brassica rapa HOM05D001480 ORTHO05D001331 2.2e-11 72.8 69 53.6
BcaC06g31486 Brassica carinata HOM05D001480 ORTHO05D001331 2.8e-11 72.4 69 53.6
A06p46040 Brassica napus HOM05D001480 ORTHO05D001331 2.8e-11 72.4 69 52.2
Lalb_Chr18g0055511 Lupinus albus HOM05D001480 ORTHO05D001331 2.8e-11 72.4 64 57.8
TPR.G28612 Trifolium pratense HOM05D001480 ORTHO05D001331 2.8e-11 72.4 72 52.8
HPP92_009662 Vanilla planifolia HOM05D001480 ORTHO05D001331 2.8e-11 72.4 67 52.2
Aa31LG9G6620 Aethionema arabicum HOM05D001480 ORTHO05D001331 3.7e-11 72.0 69 55.1
Ah.09g232640 Amaranthus hybridus HOM05D001480 ORTHO05D001331 4.8e-11 71.6 72 45.8
Psat1g190760 Pisum sativum HOM05D001480 ORTHO05D001331 4.8e-11 71.6 72 50.0
C07p29490 Brassica napus HOM05D001480 ORTHO05D001331 6.3e-11 71.2 69 52.2
arahy.Tifrunner.gnm1.ann1.1W7KJJ Arachis hypogaea HOM05D001480 ORTHO05D001331 8.2e-11 70.9 61 59.0
arahy.Tifrunner.gnm1.ann1.LTDM4B Arachis hypogaea HOM05D001480 ORTHO05D001331 8.2e-11 70.9 61 59.0
Hund17807 Selenicereus undatus HOM05D001480 ORTHO05D001331 3.1e-10 68.9 101 38.6
Medtr2g019620 Medicago truncatula HOM05D001480 ORTHO05D001331 4.1e-10 68.6 72 50.0
AUR62030210 Chenopodium quinoa HOM05D001480 ORTHO05D001331 5.3e-10 68.2 81 45.7
Ca_00550_v3 Cicer arietinum L. HOM05D001480 ORTHO05D001331 5.3e-10 68.2 72 50.0
ATR0044G025 Amborella trichopoda HOM05D001480 ORTHO05D001331 3.8e-08 62.0 53 50.9
Zm00001eb152790 Zea mays HOM05D001480 ORTHO05D001331 4.2e-07 58.5 58 51.7
CDE02G2405 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 5.5e-07 58.2 72 45.8
Gohir.D13G036000 Gossypium hirsutum HOM05D001480 ORTHO05D001331 1.2e-06 57.0 94 36.2
Ciclev10028506m.g Citrus clementina HOM05D001480 ORTHO05D001331 2.1e-06 56.2 85 37.6
PGR042G2114 Punica granatum HOM05D001480 ORTHO05D001331 7.9e-06 54.3 53 50.9


User provided reference genes

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