Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016374 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 5.0e-63 244.2 117 100.0
CSS0042843 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 9.7e-59 229.9 117 94.9
CSS0033752 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 1.8e-57 225.7 117 91.5
CSS0020082 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 2.5e-54 215.3 117 88.9
Rhsim02G0205300 Rhododendron simsii HOM05D003039 ORTHO05D008410 3.8e-47 191.4 111 77.5
TAR633G0505 Trochodendron aralioides HOM05D003039 ORTHO05D008410 5.5e-46 187.6 117 71.8
TAR633G1464 Trochodendron aralioides HOM05D003039 ORTHO05D008410 5.5e-46 187.6 117 71.8
Lj1P893G46 Lonicera japonica HOM05D003039 ORTHO05D008410 9.1e-41 170.2 109 71.6
Ca_04108_v3 Cicer arietinum L. HOM05D003039 ORTHO05D008410 7.7e-40 167.2 109 71.6
Ca_04117_v3 Cicer arietinum L. HOM05D003039 ORTHO05D008410 7.7e-40 167.2 109 71.6
VMungo0016G0002 Vigna mungo HOM05D003039 ORTHO05D008410 1.3e-39 166.4 111 68.5
AUR62020631 Chenopodium quinoa HOM05D000182 ORTHO05D000112 1.7e-39 166.0 110 67.3
AUR62038751 Chenopodium quinoa HOM05D003039 ORTHO05D008410 1.7e-39 166.0 110 67.3
Nn2g12485 Nelumbo nucifera HOM05D003039 ORTHO05D008410 2.9e-39 165.2 117 65.8
Lj1g0018465 Lotus japonicus HOM05D003039 ORTHO05D008410 5.0e-39 164.5 108 69.4
Glyma.19G010600 Glycine max HOM05D003039 ORTHO05D008410 1.1e-38 163.3 109 68.8
Hma1.2p1_0178F.1_g078560 Hydrangea macrophylla HOM05D003039 ORTHO05D008410 2.5e-38 162.2 104 71.2
TPR.G4337 Trifolium pratense HOM05D003039 ORTHO05D008410 5.5e-38 161.0 109 67.0
Psat3g196640 Pisum sativum HOM05D003039 ORTHO05D008410 1.6e-37 159.5 106 67.9
EL10Ac5g11611 Beta vulgaris HOM05D003039 ORTHO05D008410 2.8e-37 158.7 109 66.1
Sabra01G0100800 Salix brachista HOM05D003039 ORTHO05D008410 4.0e-36 154.8 105 67.6
Duzib235G1487 Durio zibethinus HOM05D003039 ORTHO05D008410 5.2e-36 154.5 108 63.0
Atru.chr4.952 Acer truncatum HOM05D003039 ORTHO05D008410 8.9e-36 153.7 117 62.4
CSS0033889 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 8.9e-36 153.7 77 92.2
PGR083G2073 Punica granatum HOM05D003039 ORTHO05D008410 8.9e-36 153.7 111 60.4
Potri.001G130400 Populus trichocarpa HOM05D003039 ORTHO05D008410 2.0e-35 152.5 105 67.6
MD11G1035500 Malus domestica HOM05D003039 ORTHO05D008410 2.6e-35 152.1 117 61.5
Thecc.06G053600 Theobroma cacao HOM05D003039 ORTHO05D008410 4.4e-35 151.4 108 63.0
MBI14_g08138_MAGBIO Magnolia biondii HOM05D003039 ORTHO05D008410 1.3e-34 149.8 109 61.5
Prupe.2G028200 Prunus persica HOM05D003039 ORTHO05D008410 1.3e-34 149.8 105 65.7
Lalb_Chr10g0093391 Lupinus albus HOM05D003039 ORTHO05D008410 2.2e-34 149.1 105 63.8
Aqoxy7G02983 Aquilegia oxysepala HOM05D003039 ORTHO05D008410 2.8e-34 148.7 111 61.3
Ciclev10019823m.g Citrus clementina HOM05D003039 ORTHO05D008410 2.8e-34 148.7 101 69.3
Eucgr.D00236 Eucalyptus grandis HOM05D003039 ORTHO05D008410 9.2e-33 143.7 104 63.5
MD03G1030500 Malus domestica HOM05D003039 ORTHO05D008410 9.2e-33 143.7 105 61.0
FvH4_7g04300 Fragaria vesca HOM05D003039 ORTHO05D008410 2.7e-32 142.1 99 66.7
FAN06G2480 Fragaria x ananassa HOM05D003039 ORTHO05D008410 2.7e-32 142.1 99 66.7
FAN10G1410 Fragaria x ananassa HOM05D003039 ORTHO05D008410 2.7e-32 142.1 99 66.7
RcHm_v2.0_Chr1g0329261 Rosa chinensis HOM05D003039 ORTHO05D008410 5.9e-32 141.0 99 66.7
COL.COLO4_07473 Corchorus olitorius HOM05D003039 ORTHO05D008410 5.0e-31 137.9 104 58.7
CANSAT78G1923 Cannabis sativa HOM05D003039 ORTHO05D008410 1.9e-30 136.0 101 60.4
Gohir.D13G119800 Gossypium hirsutum HOM05D003039 ORTHO05D008410 5.6e-30 134.4 102 58.8
Gorai.013G134200 Gossypium raimondii HOM05D003039 ORTHO05D008410 5.6e-30 134.4 102 58.8
CsaV3_5G005760 Cucumis sativus L. HOM05D003039 ORTHO05D008410 7.3e-30 134.0 103 57.3
Migut.C01014 Erythranthe guttata HOM05D003039 ORTHO05D008410 8.0e-29 130.6 103 62.1
Gohir.A13G116700 Gossypium hirsutum HOM05D003039 ORTHO05D008410 1.0e-28 130.2 100 59.0
MELO3C005377.2 Cucumis melo HOM05D003039 ORTHO05D008410 5.2e-28 127.9 100 57.0
Aa31LG9G15670 Aethionema arabicum HOM05D003039 ORTHO05D008410 4.9e-26 121.3 100 55.0
BcaC07g40632 Brassica carinata HOM05D003039 ORTHO05D008410 4.9e-26 121.3 101 54.5
A09p53410 Brassica napus HOM05D003039 ORTHO05D008410 4.9e-26 121.3 101 54.5
C08p36220 Brassica napus HOM05D003039 ORTHO05D008410 4.9e-26 121.3 101 54.5
BolC8t51204H Brassica oleracea HOM05D003039 ORTHO05D008410 4.9e-26 121.3 101 54.5
BraA09t40767Z Brassica rapa HOM05D003039 ORTHO05D008410 6.4e-26 120.9 101 53.5
CSS0038737 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 1.4e-25 119.8 77 80.5
Carub.0005s2803 Capsella rubella HOM05D003039 ORTHO05D008410 3.2e-25 118.6 105 52.4
CARHR171700 Cardamine hirsuta HOM05D003039 ORTHO05D008410 7.0e-25 117.5 101 53.5
AT3G61360 Arabidopsis thaliana HOM05D003039 ORTHO05D008410 1.2e-24 116.7 101 53.5
Cfa006303 Carpinus fangiana HOM05D003039 ORTHO05D008410 1.5e-22 109.8 74 71.6
Haze_04486 Corylus avellana HOM05D003039 ORTHO05D008410 7.3e-22 107.5 79 67.1
Phvul.004G017900 Phaseolus vulgaris HOM05D003039 ORTHO05D008410 9.5e-22 107.1 73 69.9
ATR0580G194 Amborella trichopoda HOM05D003039 ORTHO05D008410 2.1e-21 105.9 108 48.1
Manes.03G196200 Manihot esculenta HOM05D003039 ORTHO05D008410 8.0e-21 104.0 106 50.0
Os06g0694600 Oryza sativa ssp. japonica HOM05D003039 ORTHO05D008410 1.2e-19 100.1 96 50.0
VMungo1383G1437 Vigna mungo HOM05D003039 ORTHO05D008410 1.5e-19 99.8 108 46.3
CiPaw.16G103800 Carya illinoinensis HOM05D003039 ORTHO05D008410 4.9e-18 94.7 69 65.2
GSVIVG01012782001 Vitis vinifera HOM05D003039 ORTHO05D008410 4.9e-18 94.7 70 64.3
Zm00001eb226310 Zea mays HOM05D003039 ORTHO05D008410 1.4e-17 93.2 96 46.9
QL07p027161 Quercus lobata HOM05D003039 ORTHO05D008410 2.4e-17 92.4 65 67.7
Hma1.2p1_0178F.1_g078570 Hydrangea macrophylla HOM05D003039 ORTHO05D008410 5.4e-17 91.3 73 63.0
TWI09G0319 Tripterygium wilfordii HOM05D003039 ORTHO05D008410 1.2e-16 90.1 61 67.2
CDE07G0739 Ceratophyllum demersum HOM05D003039 ORTHO05D008410 3.0e-15 85.5 104 41.3
DCAR_013250 Daucus carota HOM05D003039 ORTHO05D008410 6.6e-15 84.3 65 61.5
Peaxi162Scf00765g00014 Petunia axillaris HOM05D003039 ORTHO05D008410 8.6e-15 84.0 63 63.5
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 4.3e-14 81.6 101 40.6
AL1G53570 Arabidopsis lyrata HOM05D003039 ORTHO05D017397 1.6e-13 79.7 101 40.6
Dinv06600 Davidia involucrata HOM05D003039 ORTHO05D008410 1.6e-13 79.7 103 43.7
ClCG01G005530 Citrullus lanatus HOM05D003039 ORTHO05D008410 4.7e-13 78.2 69 55.1
Nitab4.5_0000201g0210 Nicotiana tabacum HOM05D003039 ORTHO05D008410 6.2e-13 77.8 67 58.2
PGSC0003DMG400008615 Solanum tuberosum HOM05D003039 ORTHO05D008410 1.8e-12 76.3 55 67.3
Nitab4.5_0010112g0050 Nicotiana tabacum HOM05D003039 ORTHO05D008410 3.1e-12 75.5 66 57.6
SGA_v2.0_scaffold48G17965 Striga asiatica HOM05D003039 ORTHO05D008410 3.1e-12 75.5 103 41.7
Actinidia13220 Actinidia chinensis HOM05D003039 ORTHO05D008410 4.0e-12 75.1 47 80.9
Solyc04g071280.3 Solanum lycopersicum HOM05D003039 ORTHO05D008410 4.0e-12 75.1 55 65.5
Sopen04g027230 Solanum pennellii HOM05D003039 ORTHO05D008410 4.0e-12 75.1 55 65.5
vmacro21895 Vaccinium macrocarpon HOM05D003039 ORTHO05D008410 4.0e-12 75.1 50 74.0
CAN.G175.21 Capsicum annuum HOM05D003039 ORTHO05D008410 8.9e-12 73.9 64 57.8
Cpa.g.sc33.110 Carica papaya HOM05D003039 ORTHO05D008410 1.5e-11 73.2 55 63.6
THA.LOC104812722 Tarenaya hassleriana HOM05D003039 ORTHO05D008410 4.4e-11 71.6 104 35.6
A04p01150 Brassica napus HOM05D003039 ORTHO05D017397 9.9e-11 70.5 86 43.0
BraA04t15832Z Brassica rapa HOM05D003039 ORTHO05D008410 9.9e-11 70.5 86 43.0
SalBow7G2460 Salvia bowleyana HOM05D003039 ORTHO05D008410 6.4e-10 67.8 52 65.4
Lsat_1_v5_gn_9_88941 Lactuca sativa HOM05D003039 ORTHO05D008410 1.4e-09 66.6 59 52.5
Sc07g0006310 Simmondsia chinensis HOM05D003039 ORTHO05D008410 1.4e-09 66.6 50 62.0
HanXRQChr03g0080361 Helianthus annuus HOM05D003039 ORTHO05D008410 2.4e-09 65.9 59 50.8
Sed0027709 Sechium edule HOM05D003039 ORTHO05D008410 5.4e-09 64.7 69 50.7
Dinv21315 Davidia involucrata HOM05D003039 ORTHO05D008410 2.1e-08 62.8 42 69.0
ECA240G2382 Erigeron canadensis HOM05D003039 ORTHO05D008410 2.1e-08 62.8 49 57.1
Ah.11g043940 Amaranthus hybridus HOM05D003039 ORTHO05D008410 7.8e-08 60.8 56 50.0
MELO3C010658.2 Cucumis melo HOM05D000424 ORTHO05D000355 1.3e-07 60.1 88 30.7
Cc10_g14690 Coffea canephora HOM05D003039 ORTHO05D008410 1.5e-06 56.6 45 60.0
Sc10g0008050 Simmondsia chinensis HOM05D000424 ORTHO05D000355 4.3e-06 55.1 88 28.4
Rhsim01G0292600 Rhododendron simsii HOM05D003039 ORTHO05D009478 9.5e-06 53.9 87 34.5


User provided reference genes

Program Settings