Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 4.4e-305 1050.4 519 100.0
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.3e-283 979.2 519 92.9
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 1.3e-283 979.2 520 92.9
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 1.1e-282 976.1 519 92.7
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 1.2e-281 972.6 523 91.0
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 2.2e-280 968.4 522 90.8
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 2.9e-280 968.0 525 90.1
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 6.5e-280 966.8 526 90.1
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 2.5e-279 964.9 519 90.4
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 3.2e-279 964.5 519 90.8
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 6.0e-278 960.3 532 88.2
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 7.9e-278 959.9 520 90.0
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.8e-277 958.7 526 89.7
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 8.7e-277 956.4 525 89.1
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.1e-276 956.1 519 90.9
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.1e-276 956.1 518 90.2
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.5e-276 955.7 531 88.3
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 3.3e-276 954.5 521 89.8
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 5.7e-276 953.7 519 89.4
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 9.6e-276 953.0 521 89.6
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 1.3e-275 952.6 530 87.9
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.1e-275 951.8 524 89.1
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.1e-275 951.8 524 89.1
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 2.8e-275 951.4 525 88.4
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 3.7e-275 951.0 521 89.3
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 3.7e-275 951.0 517 90.3
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 4.8e-275 950.7 517 89.9
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.1e-274 949.5 521 89.6
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 1.4e-274 949.1 521 89.3
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 1.4e-274 949.1 521 89.4
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 1.8e-274 948.7 565 84.1
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 4.0e-274 947.6 521 89.4
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 5.3e-274 947.2 530 87.5
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 9.0e-274 946.4 517 89.4
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 1.5e-273 945.7 517 89.6
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.5e-273 945.7 521 88.9
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.5e-273 945.7 520 88.8
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 2.0e-273 945.3 521 88.9
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 3.4e-273 944.5 517 89.6
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.5e-273 944.1 521 89.3
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 7.6e-273 943.3 526 87.3
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 7.6e-273 943.3 526 87.5
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 2.2e-272 941.8 517 88.6
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 2.2e-272 941.8 518 88.8
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 2.2e-272 941.8 525 88.0
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 6.5e-272 940.3 527 87.7
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.1e-271 939.5 522 87.7
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 1.9e-271 938.7 528 87.3
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 2.5e-271 938.3 555 84.7
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 3.2e-271 937.9 519 87.9
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 5.5e-271 937.2 528 87.1
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 7.1e-271 936.8 521 87.9
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 9.3e-271 936.4 519 89.4
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 2.1e-270 935.3 519 87.3
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.7e-270 934.9 528 86.7
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 3.5e-270 934.5 519 87.3
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 4.6e-270 934.1 519 87.3
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 4.6e-270 934.1 519 87.3
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 6.1e-270 933.7 509 89.0
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 3.0e-269 931.4 503 90.1
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.9e-269 931.0 519 88.6
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 6.7e-269 930.2 503 90.5
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.9e-268 928.7 523 87.4
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.9e-268 928.7 523 87.4
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 9.7e-268 926.4 528 85.6
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.3e-267 926.0 518 87.5
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.6e-267 925.6 528 85.8
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 2.2e-267 925.2 525 85.5
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 3.7e-267 924.5 524 86.3
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.7e-267 924.5 546 83.9
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 4.8e-267 924.1 527 85.4
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 6.3e-267 923.7 524 86.1
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 6.3e-267 923.7 519 86.5
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 1.1e-266 922.9 529 85.8
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.4e-266 922.5 520 86.7
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 1.8e-266 922.2 528 85.2
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.1e-266 921.0 523 87.0
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 5.3e-266 920.6 526 85.7
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 5.3e-266 920.6 524 85.3
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 9.0e-266 919.8 523 86.6
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 1.2e-265 919.5 524 85.5
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 1.2e-265 919.5 524 85.5
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.5e-265 919.1 525 87.0
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 4.5e-265 917.5 524 85.5
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 4.5e-265 917.5 515 87.8
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 4.5e-265 917.5 522 85.8
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 5.9e-265 917.1 524 85.5
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 5.9e-265 917.1 524 85.5
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 7.7e-265 916.8 500 88.8
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 1.3e-264 916.0 502 88.4
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 8.5e-264 913.3 532 84.4
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 1.1e-263 912.9 522 85.1
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 9.4e-263 909.8 522 84.1
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 4.6e-262 907.5 521 84.6
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 3.3e-260 901.4 519 85.4
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 4.3e-260 901.0 522 83.3
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 9.7e-260 899.8 535 83.6
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 2.8e-259 898.3 511 84.1
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 6.3e-259 897.1 516 82.6
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.5e-257 892.5 522 82.6
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 4.5e-257 891.0 498 85.5
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 2.3e-253 878.6 514 80.7
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 5.1e-253 877.5 520 82.3
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 5.1e-253 877.5 520 82.3
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 5.3e-250 867.5 528 78.0
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 1.5e-247 859.4 519 80.9
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 2.2e-243 845.5 521 80.8
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.1e-242 843.2 528 76.5
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 2.0e-241 839.0 564 74.6
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 4.8e-235 817.8 521 75.2
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 7.0e-234 813.9 473 86.9
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 2.0e-233 812.4 521 75.2
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 8.8e-229 797.0 500 75.4
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.5e-228 796.2 506 73.1
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 6.6e-224 780.8 520 70.6
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.3e-223 778.5 495 73.1
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.0e-221 771.9 495 71.9
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 3.2e-218 761.9 520 68.7
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.5e-215 753.1 524 74.0
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 2.1e-214 749.2 512 70.5
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 8.0e-214 747.3 525 73.7
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 3.4e-212 741.9 520 74.4
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.3e-211 740.0 412 87.1
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.7e-208 729.6 522 73.0
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 2.1e-206 722.6 492 68.5
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 2.4e-202 709.1 379 92.3
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 1.7e-187 659.8 535 59.4
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 8.4e-187 657.5 495 65.1
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 4.2e-186 655.2 344 94.5
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.2e-185 653.7 419 80.2
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 3.9e-184 648.7 346 92.5
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.0e-160 570.9 518 58.9
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 5.9e-156 555.1 355 78.9
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 3.2e-154 549.3 491 53.8
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 2.3e-152 543.1 290 89.3
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 3.1e-149 532.7 288 88.2
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 1.6e-145 520.4 275 94.5
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.1e-137 493.4 356 72.2
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 3.3e-135 486.1 510 49.8
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 2.9e-131 473.0 502 49.8
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 3.2e-122 443.0 285 79.3
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 3.3e-98 363.2 192 89.1
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 2.5e-82 310.5 409 39.9
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 2.4e-64 250.8 325 45.8
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 2.0e-63 247.7 359 43.7
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.1e-44 184.5 120 72.5
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 6.3e-41 172.9 93 87.1
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 3.1e-32 144.1 79 84.8
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.1e-26 125.6 93 63.4
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 9.7e-26 122.5 68 80.9
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 2.3e-19 101.3 76 65.8
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 7.7e-15 86.3 72 62.5
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 9.4e-13 79.3 125 42.4
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 1.4e-11 75.5 48 68.8
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.8e-08 65.1 35 82.9


User provided reference genes

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