Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.5e-255 884.4 431 100.0
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 5.9e-202 707.6 431 84.0
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 9.4e-184 647.1 457 73.5
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 3.6e-183 645.2 455 74.1
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 1.0e-182 643.7 457 72.9
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.8e-182 642.9 457 73.1
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 4.5e-178 628.2 457 72.6
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 4.5e-178 628.2 456 71.9
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.8e-177 625.2 454 72.5
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 1.2e-173 613.6 457 70.2
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 4.4e-173 611.7 457 70.0
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 9.7e-173 610.5 457 68.9
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 8.3e-172 607.4 456 68.6
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 1.2e-170 603.6 457 68.1
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 5.0e-169 598.2 457 68.3
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 3.2e-168 595.5 457 67.8
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 7.2e-168 594.3 458 68.3
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 9.4e-168 594.0 458 68.6
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 9.4e-168 594.0 457 67.8
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 2.1e-167 592.8 465 67.3
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 8.0e-167 590.9 457 67.8
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 1.8e-166 589.7 457 67.0
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 1.8e-166 589.7 456 66.7
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 6.8e-166 587.8 457 67.2
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 1.5e-165 586.6 454 66.7
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 2.0e-165 586.3 456 67.5
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 3.4e-165 585.5 457 67.2
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 5.7e-165 584.7 456 67.1
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 7.5e-165 584.3 456 66.4
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 3.7e-164 582.0 458 66.8
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 3.1e-163 578.9 477 63.9
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 4.1e-163 578.6 458 66.8
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 3.5e-162 575.5 456 65.4
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 7.7e-162 574.3 451 67.0
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 1.3e-161 573.5 456 65.4
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 2.1e-159 566.2 455 64.8
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 2.1e-159 566.2 457 64.6
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 1.5e-157 560.1 458 63.3
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 3.4e-157 558.9 457 63.0
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 4.4e-157 558.5 424 70.0
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 2.8e-156 555.8 456 64.0
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 6.3e-156 554.7 456 62.7
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 1.4e-155 553.5 421 68.2
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 1.6e-154 550.1 458 62.4
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 2.0e-154 549.7 457 63.2
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 7.8e-154 547.7 455 64.2
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 2.3e-153 546.2 475 61.3
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 8.6e-153 544.3 479 61.2
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 1.1e-152 543.9 455 61.8
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 2.5e-152 542.7 456 61.8
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 3.3e-152 542.3 456 61.6
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 9.5e-152 540.8 464 61.2
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 1.2e-151 540.4 464 61.2
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 3.6e-151 538.9 440 63.6
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.4e-150 537.0 464 60.8
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 1.2e-149 533.9 437 62.5
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 1.5e-149 533.5 508 57.3
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.6e-149 532.7 419 67.1
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 5.8e-149 531.6 456 61.2
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 7.5e-149 531.2 469 61.0
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 1.2e-146 523.9 460 61.7
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 1.2e-146 523.9 457 60.4
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 6.0e-146 521.5 439 61.5
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 2.3e-145 519.6 457 60.8
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 3.9e-145 518.8 453 59.8
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 6.6e-145 518.1 456 60.5
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 1.1e-144 517.3 454 60.1
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 1.1e-144 517.3 456 59.2
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 5.6e-144 515.0 459 59.0
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 2.1e-143 513.1 456 59.6
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 8.0e-143 511.1 456 59.4
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 8.0e-143 511.1 456 59.4
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 5.2e-142 508.4 424 63.7
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 5.2e-142 508.4 496 56.2
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 4.4e-141 505.4 456 59.6
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 7.5e-141 504.6 459 58.2
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 2.2e-140 503.1 456 59.0
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 8.3e-140 501.1 450 59.1
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 1.2e-138 497.3 462 56.7
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.1e-138 496.5 423 60.8
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.5e-136 489.6 438 60.7
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 7.3e-136 488.0 400 65.2
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 2.1e-135 486.5 457 56.7
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 3.6e-135 485.7 426 59.9
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 8.1e-135 484.6 457 56.9
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 1.2e-133 480.7 456 57.0
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 2.0e-133 479.9 458 55.7
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 2.2e-132 476.5 457 56.2
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 4.9e-132 475.3 456 55.7
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 1.4e-131 473.8 458 55.7
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 3.0e-129 466.1 518 51.5
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 2.1e-127 459.9 409 61.1
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 3.6e-127 459.1 410 59.8
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 1.5e-125 453.8 440 57.3
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 8.4e-124 448.0 449 55.9
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 1.6e-122 443.7 375 62.7
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 1.1e-118 431.0 449 49.2
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 2.9e-116 422.9 455 49.5
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 2.5e-112 409.8 426 54.0
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 2.6e-109 399.8 331 62.5
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 2.9e-108 396.4 430 52.8
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 1.9e-107 393.7 429 50.3
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 2.5e-104 383.3 384 54.2
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 3.7e-103 379.4 429 48.7
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 3.4e-101 372.9 440 49.5
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 4.3e-96 355.9 431 47.6
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 1.6e-95 354.0 467 45.6
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 2.2e-92 343.6 439 44.4
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 1.8e-86 323.9 318 56.0
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 1.3e-84 317.8 318 55.7
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 1.7e-84 317.4 318 55.7
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 1.8e-81 307.4 465 39.8
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 6.7e-81 305.4 276 56.2
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 9.1e-78 295.0 654 33.6
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 9.4e-75 285.0 265 55.8
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 1.4e-70 271.2 462 37.7
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 2.2e-63 247.3 338 43.8
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 3.1e-62 243.4 295 50.5
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 4.5e-61 239.6 213 58.7
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 5.9e-45 186.0 167 61.7
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 5.9e-45 186.0 135 66.7
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 1.7e-44 184.5 121 68.6
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 5.2e-41 172.9 106 73.6
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 2.2e-39 167.5 193 50.8
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 1.4e-38 164.9 349 35.2
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 1.1e-30 138.7 299 33.8
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 3.2e-30 137.1 299 33.8
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 6.2e-26 122.9 152 44.1
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.4e-24 117.1 69 84.1
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 1.7e-23 114.8 108 57.4
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 8.3e-23 112.5 90 66.7
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 1.1e-22 112.1 85 57.6
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 9.2e-14 82.4 70 62.9
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.7e-13 80.9 67 64.2
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 8.6e-12 75.9 56 51.8
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 1.7e-07 61.6 171 29.2


User provided reference genes

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