Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016280 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.0e-60 236.5 116 100.0
CSS0016684 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 6.7e-60 233.8 116 99.1
CSS0024207 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 6.7e-60 233.8 116 99.1
CSS0032900 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 6.7e-60 233.8 116 99.1
CSS0016202 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.9e-59 232.3 116 98.3
CSS0018094 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 5.6e-59 230.7 116 98.3
CSS0017200 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 9.6e-59 229.9 116 97.4
CSS0002700 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 4.6e-45 184.5 116 82.8
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 1.5e-22 109.8 69 79.7
TAR628G0231 Trochodendron aralioides HOM05D004017 ORTHO05D004612 5.5e-22 107.8 65 78.5
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 7.2e-22 107.5 64 79.7
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 8.0e-21 104.0 66 80.3
Dinv28321 Davidia involucrata HOM05D004017 ORTHO05D004612 1.0e-20 103.6 64 76.6
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 2.3e-20 102.4 91 57.1
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 3.0e-20 102.1 69 68.1
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 8.8e-20 100.5 69 66.7
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 1.2e-19 100.1 69 71.0
Atru.chr3.129 Acer truncatum HOM05D004017 ORTHO05D004612 3.4e-19 98.6 66 68.2
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 4.4e-19 98.2 80 63.8
Lj2A500T36 Lonicera japonica HOM05D004017 ORTHO05D004612 5.7e-19 97.8 67 74.6
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 5.7e-19 97.8 65 69.2
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 2.2e-18 95.9 101 50.5
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 2.8e-18 95.5 60 70.0
arahy.Tifrunner.gnm1.ann1.IMTK78 Arachis hypogaea HOM05D004017 ORTHO05D004612 3.7e-18 95.1 69 62.3
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 8.3e-18 94.0 64 68.8
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 8.3e-18 94.0 59 74.6
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 1.4e-17 93.2 63 66.7
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 1.4e-17 93.2 69 65.2
Lalb_Chr16g0380061 Lupinus albus HOM05D004017 ORTHO05D004612 1.4e-17 93.2 66 65.2
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 1.8e-17 92.8 87 55.2
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 1.8e-17 92.8 86 55.8
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 3.1e-17 92.0 61 72.1
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 3.1e-17 92.0 63 73.0
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 7.0e-17 90.9 71 63.4
Nn6g31689 Nelumbo nucifera HOM05D004017 ORTHO05D004612 7.0e-17 90.9 64 67.2
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 7.0e-17 90.9 60 71.7
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 1.2e-16 90.1 86 54.7
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 2.0e-16 89.4 69 59.4
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 2.7e-16 89.0 60 71.7
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 2.7e-16 89.0 66 66.7
CsaV3_3G000200 Cucumis sativus L. HOM05D004017 ORTHO05D004612 3.5e-16 88.6 91 52.7
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 4.5e-16 88.2 60 70.0
Lsat_1_v5_gn_2_73681 Lactuca sativa HOM05D004017 ORTHO05D004612 5.9e-16 87.8 59 74.6
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 7.7e-16 87.4 66 65.2
Lsat_1_v5_gn_5_57160 Lactuca sativa HOM05D004017 ORTHO05D004612 7.7e-16 87.4 66 66.7
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 7.7e-16 87.4 69 56.5
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 7.7e-16 87.4 87 55.2
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 1.0e-15 87.0 57 73.7
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 1.0e-15 87.0 56 69.6
Nitab4.5_0004608g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 1.3e-15 86.7 65 66.2
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 1.3e-15 86.7 65 66.2
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.7e-15 86.3 62 64.5
Oeu045735.2 Olea europaea HOM05D004017 ORTHO05D004612 1.7e-15 86.3 65 66.2
AL7G15650 Arabidopsis lyrata HOM05D004017 ORTHO05D004612 2.9e-15 85.5 66 63.6
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 2.9e-15 85.5 57 71.9
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 2.9e-15 85.5 62 69.4
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 2.9e-15 85.5 62 64.5
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 3.8e-15 85.1 70 62.9
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 8.5e-15 84.0 64 64.1
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 8.5e-15 84.0 62 62.9
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 8.5e-15 84.0 62 62.9
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 1.1e-14 83.6 66 65.2
AUR62003744 Chenopodium quinoa HOM05D004017 ORTHO05D004612 1.5e-14 83.2 65 63.1
MELO3C013715.2 Cucumis melo HOM05D004017 ORTHO05D004612 1.5e-14 83.2 91 49.5
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 1.5e-14 83.2 66 63.6
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.9e-14 82.8 62 62.9
Hund03598 Selenicereus undatus HOM05D004017 ORTHO05D004612 1.9e-14 82.8 65 61.5
Nitab4.5_0001467g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 2.5e-14 82.4 66 63.6
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 3.2e-14 82.0 62 66.1
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 3.2e-14 82.0 62 66.1
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 3.2e-14 82.0 57 70.2
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 3.2e-14 82.0 69 59.4
AT4G35520 Arabidopsis thaliana HOM05D004017 ORTHO05D004612 4.2e-14 81.6 62 64.5
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 4.2e-14 81.6 62 64.5
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 4.2e-14 81.6 62 64.5
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 4.2e-14 81.6 57 64.9
Thhalv10024245m.g Eutrema salsugineum HOM05D004017 ORTHO05D004612 5.5e-14 81.3 62 64.5
Sp7g33300 Schrenkiella parvula HOM05D004017 ORTHO05D004612 5.5e-14 81.3 62 64.5
Carub.0007s0480 Capsella rubella HOM05D004017 ORTHO05D004612 7.2e-14 80.9 62 62.9
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 7.2e-14 80.9 61 60.7
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 1.2e-13 80.1 62 64.5
ATR0807G175 Amborella trichopoda HOM05D004017 ORTHO05D004612 1.6e-13 79.7 76 53.9
CARHR243850 Cardamine hirsuta HOM05D004017 ORTHO05D004612 1.6e-13 79.7 62 62.9
COL.COLO4_22554 Corchorus olitorius HOM05D004017 ORTHO05D004612 3.6e-13 78.6 50 76.0
SGA_v2.0_scaffold61G21182 Striga asiatica HOM05D004017 ORTHO05D004612 1.4e-12 76.6 65 58.5
AUR62002051 Chenopodium quinoa HOM05D004017 ORTHO05D004612 2.3e-12 75.9 65 60.0
Sopen01g052810 Solanum pennellii HOM05D004017 ORTHO05D004612 2.3e-12 75.9 88 51.1
Sc03g0003980 Simmondsia chinensis HOM05D004017 ORTHO05D004612 6.8e-12 74.3 64 57.8
HPP92_020507 Vanilla planifolia HOM05D004017 ORTHO05D004612 8.8e-12 73.9 62 61.3
Solyc01g110640.2 Solanum lycopersicum HOM05D004017 ORTHO05D013629 1.5e-11 73.2 69 55.1
Aa31LG6G12480 Aethionema arabicum HOM05D004017 ORTHO05D004612 3.4e-11 72.0 62 58.1
arahy.Tifrunner.gnm1.ann1.0EHY87 Arachis hypogaea HOM05D004017 ORTHO05D004612 3.4e-11 72.0 70 54.3
MD15G1230600 Malus domestica HOM05D004017 ORTHO05D004612 3.4e-11 72.0 50 66.0
SHI29523 Sapria himalayana HOM05D004017 ORTHO05D004612 2.8e-10 68.9 53 62.3
CDE06G0086 Ceratophyllum demersum HOM05D004017 ORTHO05D004612 3.7e-10 68.6 57 57.9
Ah.03g142840 Amaranthus hybridus HOM05D004017 ORTHO05D004612 4.8e-10 68.2 65 49.2
Zm00001eb104330 Zea mays HOM05D004017 ORTHO05D004612 8.3e-10 67.4 74 41.9
Zm00001eb104360 Zea mays HOM05D004017 ORTHO05D004612 8.3e-10 67.4 74 41.9
Mapoly0006s0222 Marchantia polymorpha HOM05D004017 ORTHO05D004612 3.1e-09 65.5 56 60.7
Os09g0551900 Oryza sativa ssp. japonica HOM05D004017 ORTHO05D004612 4.1e-09 65.1 57 50.9
Sopen02g027370 Solanum pennellii HOM05D004017 ORTHO05D004612 7.0e-09 64.3 50 62.0
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 2.0e-08 62.8 65 53.8
unitig_747.g21784 Utricularia gibba HOM05D004017 ORTHO05D004612 2.0e-08 62.8 70 48.6
Migut.L00851 Erythranthe guttata HOM05D004017 ORTHO05D004612 2.7e-08 62.4 60 58.3
Sopen02g033710 Solanum pennellii HOM05D004017 ORTHO05D004612 1.3e-07 60.1 53 50.9
Zm00001eb104340 Zea mays HOM05D004017 ORTHO05D004612 1.5e-06 56.6 59 40.7


User provided reference genes

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