Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 6.1e-155 550.8 285 100.0
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 5.0e-125 451.4 289 83.7
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 3.0e-122 442.2 283 83.0
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 2.5e-116 422.5 289 78.5
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.5e-116 421.4 305 75.1
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 3.0e-114 415.6 287 78.7
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 8.3e-112 407.5 287 76.0
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.6e-110 403.3 282 78.4
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.0e-109 400.6 287 76.7
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.3e-109 400.2 324 69.1
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 2.9e-109 399.1 288 75.0
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 2.9e-109 399.1 293 75.8
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 3.8e-109 398.7 288 75.0
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 5.0e-109 398.3 287 75.3
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.1e-108 397.1 271 78.2
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.1e-108 397.1 287 73.9
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 1.5e-108 396.7 224 87.5
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 3.3e-108 395.6 289 75.4
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 5.6e-108 394.8 286 75.9
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 9.5e-108 394.0 289 75.1
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 1.2e-107 393.7 288 73.6
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 1.6e-107 393.3 223 88.3
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.8e-107 392.5 268 77.6
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.8e-107 392.5 289 73.0
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 3.6e-107 392.1 271 78.2
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 3.6e-107 392.1 290 75.2
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 3.6e-107 392.1 285 75.1
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.4e-106 390.2 275 75.3
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 1.8e-106 389.8 250 80.4
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 2.3e-106 389.4 271 74.5
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 3.0e-106 389.0 286 71.3
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 5.2e-106 388.3 287 73.2
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 8.9e-106 387.5 276 74.3
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 1.5e-105 386.7 293 71.7
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 1.5e-105 386.7 286 73.1
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 3.4e-105 385.6 281 75.1
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 3.4e-105 385.6 295 71.2
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 3.4e-105 385.6 288 70.8
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 3.4e-105 385.6 292 72.9
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 4.4e-105 385.2 285 73.7
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 7.5e-105 384.4 289 74.0
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 7.5e-105 384.4 286 73.1
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 9.8e-105 384.0 271 75.6
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 1.7e-104 383.3 289 73.4
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.7e-104 383.3 287 73.5
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 1.7e-104 383.3 291 71.8
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 3.7e-104 382.1 289 73.0
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 3.7e-104 382.1 288 72.9
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 6.4e-104 381.3 268 75.0
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 8.3e-104 380.9 285 72.6
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 1.1e-103 380.6 267 75.3
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 2.4e-103 379.4 292 71.9
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 2.4e-103 379.4 223 85.7
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 4.1e-103 378.6 285 73.7
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 5.4e-103 378.3 286 73.8
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 5.4e-103 378.3 286 71.3
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 7.0e-103 377.9 292 71.9
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 9.2e-103 377.5 286 71.7
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 2.7e-102 375.9 292 70.9
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 6.0e-102 374.8 213 87.8
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 7.8e-102 374.4 231 83.1
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 1.0e-101 374.0 289 71.6
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 1.0e-101 374.0 287 72.5
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 1.3e-101 373.6 198 93.4
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.3e-101 373.6 287 70.0
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.7e-101 373.2 238 79.0
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 6.6e-101 371.3 288 69.8
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 8.6e-101 370.9 276 74.3
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 1.1e-100 370.5 258 75.2
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.1e-100 370.5 241 80.1
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 1.1e-100 370.5 286 70.3
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.5e-100 370.2 210 86.7
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.5e-100 370.2 222 83.3
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 1.5e-100 370.2 213 86.9
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 3.3e-100 369.0 289 69.9
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 3.3e-100 369.0 283 71.7
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 3.3e-100 369.0 275 73.1
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 4.3e-100 368.6 289 69.9
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 5.6e-100 368.2 290 70.0
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 5.6e-100 368.2 279 73.5
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 7.3e-100 367.9 288 69.8
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.1e-99 366.3 226 82.3
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 2.1e-99 366.3 211 86.7
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 2.1e-99 366.3 284 71.5
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 2.8e-99 365.9 289 70.6
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 3.6e-99 365.5 235 78.3
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 4.7e-99 365.2 214 86.9
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 4.7e-99 365.2 223 82.1
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 6.2e-99 364.8 276 73.6
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 6.2e-99 364.8 281 72.6
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 8.0e-99 364.4 220 84.1
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.4e-98 363.6 285 69.8
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 1.8e-98 363.2 289 67.1
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.1e-98 362.5 286 70.3
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.0e-98 362.1 242 78.1
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 5.2e-98 361.7 224 81.2
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 1.2e-97 360.5 198 89.4
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 1.5e-97 360.1 212 85.4
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 5.8e-97 358.2 299 67.6
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.3e-96 357.1 278 69.4
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 1.7e-96 356.7 225 80.0
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.2e-96 356.3 278 69.4
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.7e-96 355.5 276 69.6
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.9e-96 355.1 276 69.6
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 1.4e-95 353.6 214 82.7
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.9e-95 353.2 289 69.9
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 3.2e-95 352.4 214 82.2
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 1.6e-94 350.1 280 67.5
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 4.6e-94 348.6 214 81.3
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 6.0e-94 348.2 214 82.2
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 6.0e-94 348.2 279 66.3
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 6.0e-94 348.2 210 84.8
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 1.7e-93 346.7 214 80.8
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.1e-92 344.0 321 62.3
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 9.5e-92 340.9 198 83.8
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.2e-91 338.2 291 67.4
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 2.3e-90 336.3 198 83.3
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 5.2e-90 335.1 276 68.5
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 6.8e-90 334.7 266 68.0
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 2.6e-89 332.8 289 66.8
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.6e-89 332.8 303 63.4
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 3.4e-89 332.4 276 68.1
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 3.7e-88 328.9 233 78.5
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.4e-87 327.0 317 61.5
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 2.3e-85 319.7 196 81.1
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 1.2e-83 313.9 166 92.2
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.1e-82 310.8 284 63.7
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.4e-82 309.7 194 80.4
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 8.9e-82 307.8 282 63.8
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 2.4e-79 299.7 210 71.4
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 3.2e-79 299.3 218 70.2
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 2.7e-78 296.2 166 88.0
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 4.6e-78 295.4 240 67.5
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 6.0e-78 295.0 240 67.9
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 1.5e-76 290.4 156 89.1
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 1.1e-74 284.3 167 81.4
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 4.0e-74 282.3 192 76.0
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 1.2e-70 270.8 148 87.8
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.3e-69 267.3 198 70.2
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 9.6e-68 261.2 234 62.0
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.8e-66 256.9 159 81.8
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 6.9e-66 255.0 208 68.3
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 3.4e-65 252.7 240 62.1
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.1e-62 243.4 149 81.9
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 2.1e-62 243.4 210 65.2
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 3.3e-60 236.1 167 74.3
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 2.6e-57 226.5 202 51.5
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 4.5e-57 225.7 194 67.5
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 3.8e-56 222.6 133 77.4
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 8.7e-53 211.5 178 64.6
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 5.8e-49 198.7 135 77.0
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 1.9e-47 193.7 352 39.8
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 2.6e-41 173.3 145 63.4
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 2.3e-37 160.2 188 44.1
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 1.7e-35 154.1 200 42.0
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 4.1e-34 149.4 225 40.0
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.9e-32 143.3 83 84.3
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 7.9e-30 135.2 158 56.3
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 1.3e-24 117.9 143 54.5
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.7e-24 117.5 82 70.7
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 1.6e-22 110.9 62 85.5
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 8.0e-22 108.6 62 83.9
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 1.8e-18 97.4 59 83.1
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 7.5e-12 75.5 41 87.8
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 3.7e-11 73.2 56 73.2
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.1e-10 71.6 36 91.7
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.4e-10 71.2 40 82.5
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 1.8e-10 70.9 118 39.0
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 3.8e-08 63.2 32 90.6
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 8.5e-08 62.0 42 71.4
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.2e-07 59.7 34 82.4
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 3.6e-06 56.6 135 31.1


User provided reference genes

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