Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011125 Camellia sinensis var. sinensis HOM05D006479 ORTHO05D008310 0.0e+00 1107.4 569 100.0
CSS0016000 Camellia sinensis var. sinensis HOM05D006479 ORTHO05D008310 0.0e+00 1107.4 569 100.0
Rhsim13G0200600 Rhododendron simsii HOM05D006479 ORTHO05D008310 1.5e-245 852.8 579 74.8
Actinidia07016 Actinidia chinensis HOM05D006479 ORTHO05D008310 1.5e-242 842.8 561 75.4
Hma1.2p1_0218F.1_g092540 Hydrangea macrophylla HOM05D006479 ORTHO05D008310 4.8e-236 821.2 570 74.0
TAR633G1538 Trochodendron aralioides HOM05D006479 ORTHO05D008310 4.8e-220 768.1 569 65.7
Duzib168G1317 Durio zibethinus HOM05D006479 ORTHO05D008310 1.6e-215 753.1 566 65.7
Duzib150G0338 Durio zibethinus HOM05D006479 ORTHO05D008310 4.7e-215 751.5 570 66.0
QL01p020440 Quercus lobata HOM05D006479 ORTHO05D008310 4.7e-215 751.5 527 69.3
Thecc.09G263400 Theobroma cacao HOM05D006479 ORTHO05D008310 6.7e-214 747.7 569 68.7
COL.COLO4_25288 Corchorus olitorius HOM05D006479 ORTHO05D008310 8.8e-214 747.3 569 65.2
TWI31G0851 Tripterygium wilfordii HOM05D006479 ORTHO05D008310 3.3e-213 745.3 569 66.4
CiPaw.14G092100 Carya illinoinensis HOM05D006479 ORTHO05D008310 4.4e-213 745.0 583 63.8
Cpa.g.sc103.78 Carica papaya HOM05D006479 ORTHO05D008310 3.7e-212 741.9 570 65.4
Gohir.A05G075300 Gossypium hirsutum HOM05D006479 ORTHO05D008310 2.0e-210 736.1 573 63.4
CANSAT54G0955 Cannabis sativa HOM05D006479 ORTHO05D008310 5.9e-210 734.6 578 64.7
Gorai.009G079600 Gossypium raimondii HOM05D006479 ORTHO05D008310 5.9e-210 734.6 573 63.7
Lj2C905T5 Lonicera japonica HOM05D006479 ORTHO05D008310 1.0e-209 733.8 556 66.7
Gohir.D05G078100 Gossypium hirsutum HOM05D006479 ORTHO05D008310 1.9e-208 729.6 573 63.2
PGSC0003DMG400027398 Solanum tuberosum HOM05D006479 ORTHO05D008310 4.2e-208 728.4 570 65.6
Potri.009G157900 Populus trichocarpa HOM05D006479 ORTHO05D008310 7.2e-208 727.6 569 64.5
Solyc11g072050.1 Solanum lycopersicum HOM05D006479 ORTHO05D008310 2.7e-207 725.7 569 64.1
Sopen11g029700 Solanum pennellii HOM05D006479 ORTHO05D008310 2.7e-207 725.7 569 64.1
Cc01_g07460 Coffea canephora HOM05D006479 ORTHO05D008310 8.0e-207 724.2 569 65.9
CAN.G280.16 Capsicum annuum HOM05D006479 ORTHO05D008310 1.0e-206 723.8 569 65.4
Manes.04G055500 Manihot esculenta HOM05D006479 ORTHO05D008310 5.2e-206 721.5 526 69.4
MSTRG.17656 Avicennia marina HOM05D006479 ORTHO05D008310 2.4e-203 712.6 569 62.4
RcHm_v2.0_Chr5g0049781 Rosa chinensis HOM05D006479 ORTHO05D008310 7.0e-203 711.1 576 62.8
EL10Ac7g16227 Beta vulgaris HOM05D006479 ORTHO05D008310 2.7e-202 709.1 575 61.6
Oeu025955.1 Olea europaea HOM05D006479 ORTHO05D008310 8.6e-201 704.1 568 62.9
THA.LOC104810966 Tarenaya hassleriana HOM05D006479 ORTHO05D008310 2.5e-200 702.6 570 62.1
Prupe.6G152700 Prunus persica HOM05D006479 ORTHO05D008310 2.1e-199 699.5 574 61.8
DCAR_002128 Daucus carota HOM05D006479 ORTHO05D008310 8.0e-199 697.6 569 63.1
Ciclev10014249m.g Citrus clementina HOM05D006479 ORTHO05D008310 3.0e-198 695.7 517 67.9
TWI79G0137 Tripterygium wilfordii HOM05D006479 ORTHO05D008310 6.8e-198 694.5 510 68.2
FAN25G2741 Fragaria x ananassa HOM05D006479 ORTHO05D008310 3.4e-197 692.2 572 62.6
ClCG02G024250 Citrullus lanatus HOM05D006479 ORTHO05D008310 7.5e-197 691.0 520 69.8
Sabra09G0123500 Salix brachista HOM05D006479 ORTHO05D008310 1.3e-196 690.3 509 67.4
FAN16G0753 Fragaria x ananassa HOM05D006479 ORTHO05D008310 1.7e-196 689.9 572 62.1
MD00G1031900 Malus domestica HOM05D006479 ORTHO05D008310 3.7e-196 688.7 574 60.5
CsaV3_4G017380 Cucumis sativus L. HOM05D006479 ORTHO05D008310 1.8e-195 686.4 575 64.7
Thhalv10016076m.g Eutrema salsugineum HOM05D006479 ORTHO05D008310 2.4e-195 686.0 570 60.0
Nitab4.5_0006265g0010 Nicotiana tabacum HOM05D006479 ORTHO05D008310 2.4e-195 686.0 570 61.4
MELO3C014710.2 Cucumis melo HOM05D006479 ORTHO05D008310 3.1e-195 685.6 515 70.1
Sp6g23500 Schrenkiella parvula HOM05D006479 ORTHO05D008310 9.2e-195 684.1 570 59.8
MD11G1180000 Malus domestica HOM05D006479 ORTHO05D008310 2.7e-194 682.6 574 59.8
FvH4_3g27150 Fragaria vesca HOM05D006479 ORTHO05D008310 5.9e-194 681.4 571 62.5
FAN11G0648 Fragaria x ananassa HOM05D006479 ORTHO05D008310 1.3e-193 680.2 571 62.2
Sc21g0006530 Simmondsia chinensis HOM05D006479 ORTHO05D008310 3.8e-193 678.7 572 60.3
PGSC0003DMG400005946 Solanum tuberosum HOM05D006479 ORTHO05D008310 3.8e-193 678.7 543 62.8
PGR119G2537 Punica granatum HOM05D006479 ORTHO05D008310 6.6e-193 677.9 582 60.8
Glyma.14G044300 Glycine max HOM05D006479 ORTHO05D008310 8.6e-193 677.6 580 61.0
Atru.chr3.2921 Acer truncatum HOM05D006479 ORTHO05D008310 1.1e-192 677.2 569 61.7
arahy.Tifrunner.gnm1.ann1.Y6PBB0 Arachis hypogaea HOM05D006479 ORTHO05D008310 1.5e-192 676.8 526 64.8
FAN21G3675 Fragaria x ananassa HOM05D006479 ORTHO05D008310 1.5e-192 676.8 512 65.6
LjContig00564g0006585 Lotus japonicus HOM05D006479 ORTHO05D008310 2.5e-192 676.0 585 60.7
AUR62020174 Chenopodium quinoa HOM05D006479 ORTHO05D008310 9.5e-192 674.1 576 58.7
Migut.N02413 Erythranthe guttata HOM05D006479 ORTHO05D008310 9.5e-192 674.1 569 60.6
Glyma.02G273700 Glycine max HOM05D006479 ORTHO05D008310 2.1e-191 672.9 578 61.1
arahy.Tifrunner.gnm1.ann1.K8UYYD Arachis hypogaea HOM05D006479 ORTHO05D008310 3.6e-191 672.2 525 64.6
Sopen06g030060 Solanum pennellii HOM05D006479 ORTHO05D008310 6.1e-191 671.4 543 62.2
AUR62001606 Chenopodium quinoa HOM05D006479 ORTHO05D008310 2.3e-190 669.5 576 58.7
Solyc06g073650.1 Solanum lycopersicum HOM05D006479 ORTHO05D008310 2.3e-190 669.5 543 62.2
VMungo0647G2395 Vigna mungo HOM05D006479 ORTHO05D008310 3.0e-190 669.1 500 66.0
AL6G32590 Arabidopsis lyrata HOM05D006479 ORTHO05D008310 4.0e-190 668.7 554 60.5
Lalb_Chr10g0105871 Lupinus albus HOM05D006479 ORTHO05D008310 1.5e-189 666.8 577 60.1
Oeu032070.1 Olea europaea HOM05D006479 ORTHO05D008310 4.4e-189 665.2 563 60.6
AT5G21040 Arabidopsis thaliana HOM05D006479 ORTHO05D008310 1.7e-188 663.3 533 61.9
HanXRQChr16g0509731 Helianthus annuus HOM05D006479 ORTHO05D008310 1.7e-188 663.3 538 66.7
Ca_06149_v3 Cicer arietinum L. HOM05D006479 ORTHO05D008310 1.4e-187 660.2 554 61.4
Carub.0006s1934 Capsella rubella HOM05D006479 ORTHO05D008310 3.2e-187 659.1 544 60.5
TPR.G11782 Trifolium pratense HOM05D006479 ORTHO05D008310 4.1e-187 658.7 497 65.6
BolC9t58367H Brassica oleracea HOM05D006479 ORTHO05D008310 7.0e-187 657.9 513 63.4
C09p55040 Brassica napus HOM05D006479 ORTHO05D008310 2.0e-186 656.4 513 63.2
BraA10t43981Z Brassica rapa HOM05D006479 ORTHO05D008310 3.5e-186 655.6 513 63.4
Aa31LG1G13720 Aethionema arabicum HOM05D006479 ORTHO05D008310 4.6e-186 655.2 570 58.6
Aqoxy1G00109 Aquilegia oxysepala HOM05D006479 ORTHO05D008310 7.8e-186 654.4 577 62.4
A10p19030 Brassica napus HOM05D006479 ORTHO05D008310 7.8e-186 654.4 513 63.0
CARHR191830 Cardamine hirsuta HOM05D006479 ORTHO05D008310 1.3e-185 653.7 569 57.8
Medtr5g087680 Medicago truncatula HOM05D006479 ORTHO05D008310 3.0e-185 652.5 585 57.6
Psat2g023000 Pisum sativum HOM05D006479 ORTHO05D008310 3.3e-184 649.0 559 59.0
Eucgr.J00620 Eucalyptus grandis HOM05D006479 ORTHO05D008310 1.6e-183 646.7 537 59.8
ECA236G3846 Erigeron canadensis HOM05D006479 ORTHO05D008310 3.6e-183 645.6 502 65.9
Ah.08g222720 Amaranthus hybridus HOM05D006479 ORTHO05D008310 1.6e-178 630.2 574 56.1
Migut.D00711 Erythranthe guttata HOM05D006479 ORTHO05D008310 4.9e-172 608.6 478 61.5
Lsat_1_v5_gn_8_104041 Lactuca sativa HOM05D006479 ORTHO05D008310 4.9e-172 608.6 582 54.3
PSO339G5772 Papaver somniferum HOM05D006479 ORTHO05D008310 5.8e-165 585.1 571 54.3
PSO384G3454 Papaver somniferum HOM05D006479 ORTHO05D008310 1.9e-163 580.1 573 54.5
Os04g0619700 Oryza sativa ssp. japonica HOM05D006479 ORTHO05D008310 3.9e-161 572.4 497 56.5
CDE02G1192 Ceratophyllum demersum HOM05D006479 ORTHO05D008310 7.3e-160 568.2 481 57.4
SHI25344 Sapria himalayana HOM05D006479 ORTHO05D008310 1.4e-158 563.9 483 62.3
CDE08G0797 Ceratophyllum demersum HOM05D006479 ORTHO05D008310 4.0e-158 562.4 476 56.7
BcaC04g19499 Brassica carinata HOM05D006479 ORTHO05D008310 8.4e-156 554.7 513 57.3
MBI13_g00570_MAGBIO Magnolia biondii HOM05D006479 ORTHO05D008310 8.4e-156 554.7 445 60.0
Zm00001eb431140 Zea mays HOM05D006479 ORTHO05D008310 1.4e-155 553.9 583 50.3
Nn3g20864 Nelumbo nucifera HOM05D006479 ORTHO05D008310 3.0e-153 546.2 374 71.1
Phvul.008G208228 Phaseolus vulgaris HOM05D006479 ORTHO05D008310 2.6e-149 533.1 398 67.1
ATR0068G008 Amborella trichopoda HOM05D006479 ORTHO05D008310 5.8e-149 531.9 580 48.1
GSVIVG01037436001 Vitis vinifera HOM05D006479 ORTHO05D008310 7.6e-149 531.6 374 73.3
Cfa010250 Carpinus fangiana HOM05D006479 ORTHO05D008310 3.2e-139 499.6 482 53.9
SEGI_01115 Sequoiadendron giganteum HOM05D006479 ORTHO05D008310 1.2e-138 497.7 495 51.7
HPP92_021206 Vanilla planifolia HOM05D006479 ORTHO05D008310 4.6e-138 495.7 482 52.1
TAR636G1386 Trochodendron aralioides HOM05D006479 ORTHO05D008310 6.0e-138 495.4 342 69.6
FAN21G1997 Fragaria x ananassa HOM05D006479 ORTHO05D008310 8.7e-129 464.9 350 65.7
Haze_23643 Corylus avellana HOM05D006479 ORTHO05D008310 1.6e-114 417.5 457 49.5
Mapoly0060s0027 Marchantia polymorpha HOM05D006479 ORTHO05D008310 1.2e-106 391.3 469 43.1
SEGI_34026 Sequoiadendron giganteum HOM05D006479 ORTHO05D008310 2.1e-106 390.6 480 43.3
Pp3c4_8230 Physcomitrium patens HOM05D006479 ORTHO05D008310 3.8e-100 369.8 450 42.4
SMO358G0705 Selaginella moellendorffii HOM05D006479 ORTHO05D008310 1.8e-97 360.9 451 45.7
SGA_v2.0_scaffold16G07575 Striga asiatica HOM05D006479 ORTHO05D008310 2.0e-85 320.9 448 42.2
Nitab4.5_0008289g0040 Nicotiana tabacum HOM05D006479 ORTHO05D008310 2.5e-75 287.3 353 45.3
Nitab4.5_0000205g0010 Nicotiana tabacum HOM05D006479 ORTHO05D008310 1.4e-73 281.6 354 44.1
Peaxi162Scf00978g00216 Petunia axillaris HOM05D006479 ORTHO05D008310 3.7e-63 246.9 348 41.7
Sed0023099 Sechium edule HOM05D006479 ORTHO05D010107 7.6e-48 196.1 380 35.0
CAN.G65.211 Capsicum annuum HOM05D006479 ORTHO05D008310 9.0e-33 146.0 146 53.4
MSTRG.12413 Avicennia marina HOM05D006479 ORTHO05D008310 1.9e-30 138.3 104 68.3
Nitab4.5_0000271g0260 Nicotiana tabacum HOM05D006479 ORTHO05D008310 2.4e-30 137.9 76 75.0
Nitab4.5_0000271g0270 Nicotiana tabacum HOM05D006479 ORTHO05D008310 1.3e-26 125.6 165 46.7
Cre07.g355750 Chlamydomonas reinhardtii HOM05D006479 ORTHO05D008310 3.4e-24 117.5 480 25.4
SGA_v2.0_scaffold92G28170 Striga asiatica HOM05D006479 ORTHO05D008310 2.5e-14 84.7 137 37.2
HPP92_006712 Vanilla planifolia HOM05D000453 ORTHO05D000387 3.3e-11 74.3 183 31.1
arahy.Tifrunner.gnm1.ann1.ITY2T4 Arachis hypogaea HOM05D001335 ORTHO05D001184 6.3e-10 70.1 171 31.0
arahy.Tifrunner.gnm1.ann1.GQT8P7 Arachis hypogaea HOM05D001335 ORTHO05D001184 1.4e-09 68.9 171 30.4
MD07G1027800 Malus domestica HOM05D000453 ORTHO05D000387 5.3e-09 67.0 183 31.1
Solyc03g111780.1 Solanum lycopersicum HOM05D000453 ORTHO05D000387 1.2e-08 65.9 159 27.7
Oeu044595.1 Olea europaea HOM05D000453 ORTHO05D000387 2.0e-08 65.1 231 23.4
Atru.chr10.1113 Acer truncatum HOM05D001335 ORTHO05D001184 2.6e-08 64.7 150 32.7
Rhsim07G0022000 Rhododendron simsii HOM05D001335 ORTHO05D001184 2.6e-08 64.7 162 29.6
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 3.4e-08 64.3 179 30.7
Rhsim07G0021900 Rhododendron simsii HOM05D001335 ORTHO05D001184 4.5e-08 63.9 162 29.6
arahy.Tifrunner.gnm1.ann1.Q95WBF Arachis hypogaea HOM05D001335 ORTHO05D001184 5.9e-08 63.5 173 30.1
Lj5P133T72 Lonicera japonica HOM05D000453 ORTHO05D000387 1.0e-07 62.8 163 30.1
VMungo1215G1002 Vigna mungo HOM05D000453 ORTHO05D000387 1.3e-07 62.4 159 32.1
arahy.Tifrunner.gnm1.ann1.C4VQXX Arachis hypogaea HOM05D001335 ORTHO05D001184 1.7e-07 62.0 173 29.5
arahy.Tifrunner.gnm1.ann1.MCR2FH Arachis hypogaea HOM05D001335 ORTHO05D001184 1.7e-07 62.0 173 29.5
Eucgr.K02772 Eucalyptus grandis HOM05D000453 ORTHO05D000387 1.7e-07 62.0 140 30.0
arahy.Tifrunner.gnm1.ann1.85MML8 Arachis hypogaea HOM05D001335 ORTHO05D001184 2.9e-07 61.2 176 30.1
Carub.0001s2558 Capsella rubella HOM05D000453 ORTHO05D000387 2.9e-07 61.2 125 31.2
Phvul.003G207000 Phaseolus vulgaris HOM05D000453 ORTHO05D000387 2.9e-07 61.2 236 28.4
TWI74G0367 Tripterygium wilfordii HOM05D001335 ORTHO05D001184 3.8e-07 60.8 244 24.2
arahy.Tifrunner.gnm1.ann1.DD99A7 Arachis hypogaea HOM05D001335 ORTHO05D001184 5.0e-07 60.5 173 29.5
arahy.Tifrunner.gnm1.ann1.LEPX0K Arachis hypogaea HOM05D001335 ORTHO05D001184 5.0e-07 60.5 173 30.1
Rhsim04G0223900 Rhododendron simsii HOM05D002223 ORTHO05D009240 5.0e-07 60.5 246 24.8
arahy.Tifrunner.gnm1.ann1.WU4XQ7 Arachis hypogaea HOM05D001335 ORTHO05D001184 6.5e-07 60.1 173 30.1
TPR.G20243 Trifolium pratense HOM05D000453 ORTHO05D000387 6.5e-07 60.1 236 25.8
arahy.Tifrunner.gnm1.ann1.W4V2BL Arachis hypogaea HOM05D001335 ORTHO05D001184 8.5e-07 59.7 173 30.1
SMO356G0594 Selaginella moellendorffii HOM05D007272 ORTHO05D009305 8.5e-07 59.7 255 23.9
Haze_07633 Corylus avellana HOM05D000453 ORTHO05D000387 1.1e-06 59.3 167 29.3
Psat4g061960 Pisum sativum HOM05D000453 ORTHO05D000387 1.1e-06 59.3 162 29.0
GSVIVG01007589001 Vitis vinifera HOM05D000453 ORTHO05D000387 1.1e-06 59.3 159 27.7
Gorai.002G188800 Gossypium raimondii HOM05D000453 ORTHO05D000387 1.9e-06 58.5 120 30.0
arahy.Tifrunner.gnm1.ann1.G0UD5H Arachis hypogaea HOM05D001335 ORTHO05D001184 2.5e-06 58.2 176 30.1
arahy.Tifrunner.gnm1.ann1.Z9IP40 Arachis hypogaea HOM05D001335 ORTHO05D001184 2.5e-06 58.2 176 30.1
Glyma.15G175400 Glycine max HOM05D001335 ORTHO05D001184 2.5e-06 58.2 169 27.8
Gohir.A05G332900 Gossypium hirsutum HOM05D000453 ORTHO05D000387 2.5e-06 58.2 163 27.0
AL1G40410 Arabidopsis lyrata HOM05D000453 ORTHO05D000387 3.2e-06 57.8 120 30.8
A04p07360 Brassica napus HOM05D000453 ORTHO05D000387 3.2e-06 57.8 141 31.9
BraA04t16432Z Brassica rapa HOM05D000453 ORTHO05D000387 3.2e-06 57.8 141 31.9
Thhalv10010951m.g Eutrema salsugineum HOM05D000453 ORTHO05D000387 3.2e-06 57.8 146 28.8
QL10p005908 Quercus lobata HOM05D000453 ORTHO05D000387 3.2e-06 57.8 243 25.5
AT1G24530 Arabidopsis thaliana HOM05D000453 ORTHO05D000387 4.2e-06 57.4 120 30.8
Carub.0005s1828 Capsella rubella HOM05D000453 ORTHO05D000387 4.2e-06 57.4 145 28.3
AUR62024219 Chenopodium quinoa HOM05D000453 ORTHO05D000387 4.2e-06 57.4 122 33.6
Nn2g15057 Nelumbo nucifera HOM05D000453 ORTHO05D000387 4.2e-06 57.4 51 52.9
Sp5g10340 Schrenkiella parvula HOM05D000453 ORTHO05D000387 4.2e-06 57.4 146 28.1
CiPaw.05G145700 Carya illinoinensis HOM05D000453 ORTHO05D000387 5.5e-06 57.0 166 25.9
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 5.5e-06 57.0 83 33.7
Ah.02g115340 Amaranthus hybridus HOM05D003769 ORTHO05D004521 7.2e-06 56.6 324 20.7
CANSAT80G1588 Cannabis sativa HOM05D000453 ORTHO05D000387 7.2e-06 56.6 170 27.6
Glyma.17G126000 Glycine max HOM05D000453 ORTHO05D000387 7.2e-06 56.6 231 29.0
QL10p012364 Quercus lobata HOM05D000453 ORTHO05D000387 7.2e-06 56.6 179 28.5
Gorai.012G080600 Gossypium raimondii HOM05D000453 ORTHO05D000387 9.4e-06 56.2 132 28.8
Oeu027347.1 Olea europaea HOM05D000453 ORTHO05D000387 9.4e-06 56.2 61 45.9
Pp3c3_19940 Physcomitrium patens HOM05D001335 ORTHO05D001184 9.4e-06 56.2 167 24.0
TPR.G15737 Trifolium pratense HOM05D000453 ORTHO05D000387 9.4e-06 56.2 124 32.3


User provided reference genes

Program Settings