Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.7e-149 532.7 280 100.0
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.7e-149 532.7 280 100.0
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 7.7e-94 347.8 252 70.6
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 2.5e-92 342.8 204 79.4
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.0e-90 337.4 242 70.7
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 8.2e-88 327.8 206 75.7
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 5.3e-87 325.1 256 64.5
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 6.9e-87 324.7 233 69.1
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 9.1e-87 324.3 247 66.4
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 9.1e-87 324.3 247 66.4
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.0e-85 320.9 205 76.1
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.8e-85 318.9 239 65.3
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 2.1e-83 313.2 205 72.7
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 6.7e-82 308.1 240 66.2
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 8.8e-82 307.8 199 71.9
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 2.0e-81 306.6 252 63.9
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 5.7e-81 305.1 199 72.4
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.3e-80 303.9 201 72.1
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 2.8e-80 302.8 254 60.6
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 2.8e-80 302.8 237 65.4
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 3.7e-80 302.4 194 73.7
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 4.8e-80 302.0 239 62.8
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 6.3e-80 301.6 194 73.7
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 8.2e-80 301.2 202 71.3
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 8.2e-80 301.2 205 71.2
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 1.4e-79 300.4 201 71.1
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.8e-79 300.1 201 71.1
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 9.1e-79 297.7 194 73.2
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 9.1e-79 297.7 197 74.1
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 9.1e-79 297.7 191 74.3
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.5e-78 297.0 200 72.5
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.5e-78 295.8 194 71.6
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 7.7e-78 294.7 278 56.5
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 2.9e-77 292.7 194 71.6
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.8e-77 292.4 263 58.6
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.8e-77 292.4 263 58.6
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 5.0e-77 292.0 201 70.6
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 6.5e-77 291.6 204 69.6
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 8.5e-77 291.2 194 71.6
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.1e-76 290.8 200 70.0
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 1.5e-76 290.4 194 71.1
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 1.5e-76 290.4 194 71.1
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 4.2e-76 288.9 194 70.6
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 5.5e-76 288.5 207 64.7
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 7.2e-76 288.1 194 70.6
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 8.8e-74 281.2 211 67.8
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 2.0e-73 280.0 193 66.8
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 7.4e-73 278.1 202 64.9
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 8.2e-72 274.6 194 66.0
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 1.4e-71 273.9 174 71.8
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.8e-71 273.5 238 57.6
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 2.0e-70 270.0 194 64.9
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 2.6e-70 269.6 200 63.5
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 4.5e-70 268.9 194 64.9
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 4.5e-70 268.9 194 64.9
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 4.5e-70 268.9 192 66.7
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 7.7e-70 268.1 194 64.4
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.3e-69 267.3 190 65.3
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.7e-69 266.9 196 64.8
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.2e-69 266.5 194 64.9
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 3.8e-69 265.8 194 64.4
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.9e-68 263.5 198 64.6
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.5e-68 263.1 194 64.9
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.2e-68 262.7 181 69.6
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 4.2e-68 262.3 171 71.9
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 4.2e-68 262.3 193 62.7
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 1.6e-67 260.4 194 62.9
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 1.6e-67 260.4 194 62.9
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 6.1e-67 258.5 193 64.2
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.8e-66 256.9 196 63.3
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 1.8e-66 256.9 181 65.7
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.2e-65 254.2 182 69.8
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 3.4e-65 252.7 209 55.5
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 5.4e-63 245.4 207 60.4
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 7.7e-62 241.5 198 58.1
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 4.2e-60 235.7 179 65.4
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 7.2e-60 235.0 160 66.2
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 1.2e-59 234.2 199 55.3
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 2.7e-59 233.0 206 55.3
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 2.7e-59 233.0 199 55.3
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 3.0e-58 229.6 137 75.9
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 5.2e-58 228.8 198 53.0
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.5e-57 227.3 204 57.4
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.3e-56 224.2 198 55.1
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.1e-55 221.1 197 52.3
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 5.4e-55 218.8 195 53.3
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.6e-54 217.2 196 53.1
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.9e-53 213.0 191 58.1
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 3.8e-53 212.6 192 52.1
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 5.0e-53 212.2 157 61.8
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 5.0e-53 212.2 192 57.3
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 2.5e-52 209.9 192 51.6
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 7.2e-52 208.4 196 52.0
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 3.6e-51 206.1 145 67.6
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 3.6e-51 206.1 144 68.1
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 2.3e-50 203.4 138 71.7
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 2.0e-49 200.3 199 47.7
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 4.4e-49 199.1 199 49.7
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 5.7e-49 198.7 193 52.3
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 5.7e-49 198.7 224 44.6
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 2.2e-48 196.8 218 44.5
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 2.9e-48 196.4 203 47.3
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 1.1e-47 194.5 138 67.4
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 3.5e-46 189.5 195 43.1
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 4.6e-46 189.1 201 46.3
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 5.9e-46 188.7 203 46.3
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 7.8e-46 188.3 195 43.1
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 1.0e-45 188.0 197 46.2
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 1.0e-45 188.0 232 42.2
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.7e-45 187.2 200 46.0
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 3.9e-45 186.0 201 45.3
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 1.9e-44 183.7 174 50.6
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 9.5e-44 181.4 224 40.6
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.2e-43 181.0 197 48.2
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.8e-42 177.2 186 45.7
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.8e-42 177.2 191 45.5
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.8e-42 177.2 206 44.2
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 5.2e-42 175.6 196 46.9
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 1.5e-41 174.1 192 44.3
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 2.6e-41 173.3 201 43.3
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 5.8e-41 172.2 207 39.1
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 2.9e-40 169.9 198 41.9
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.7e-40 169.5 268 37.3
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 6.4e-40 168.7 251 38.6
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 8.3e-40 168.3 196 41.8
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 8.3e-40 168.3 195 43.1
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.0e-39 165.2 196 41.8
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.6e-38 164.1 236 39.0
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.5e-38 162.9 107 70.1
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 6.0e-38 162.2 178 43.3
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 1.7e-37 160.6 164 50.6
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 2.3e-37 160.2 193 44.6
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 2.3e-37 160.2 181 43.6
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 1.5e-36 157.5 148 49.3
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.9e-36 157.1 164 52.4
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 4.3e-36 156.0 197 39.6
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 9.5e-36 154.8 185 40.5
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 9.5e-36 154.8 201 41.8
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.2e-35 154.5 251 36.7
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 2.8e-35 153.3 203 38.4
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 1.4e-34 151.0 213 39.9
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 2.0e-33 147.1 194 39.2
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.9e-31 140.6 215 38.6
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.3e-29 134.4 196 39.3
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 3.9e-29 132.9 172 40.7
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 7.3e-28 128.6 195 36.9
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 7.3e-28 128.6 109 55.0
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 9.5e-28 128.3 109 55.0
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 1.6e-27 127.5 196 36.7
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 2.1e-27 127.1 82 70.7
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.2e-22 111.3 105 49.5
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 1.3e-21 107.8 115 43.5
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 6.8e-18 95.5 176 29.0
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 1.7e-16 90.9 192 34.4
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 2.9e-16 90.1 200 28.5
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 2.4e-15 87.0 56 78.6
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 7.1e-15 85.5 50 80.0
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-14 84.3 74 55.4
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 2.7e-14 83.6 83 54.2
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 4.6e-14 82.8 68 58.8
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 6.0e-14 82.4 192 29.2
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 3.3e-12 76.6 73 57.5
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 5.3e-10 69.3 177 24.9
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 3.4e-09 66.6 121 32.2
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 1.7e-08 64.3 65 53.8
Os10g0580600 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 8.4e-08 62.0 43 67.4


User provided reference genes

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