Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 3852.8 1990 100.0
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 3816.5 1990 99.0
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2892.1 2083 71.3
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2877.4 2074 71.2
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2853.5 2076 71.0
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2852.0 2054 71.7
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2578.5 2113 63.7
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2522.3 2081 63.1
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2499.5 2085 61.9
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2489.5 2084 62.2
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2468.3 2093 61.5
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2447.5 2072 61.0
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2443.7 2084 60.8
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2421.4 2074 60.4
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2419.8 2072 60.5
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2417.1 2079 60.9
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2412.1 2078 60.6
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2405.2 2076 60.5
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2402.1 2073 60.2
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2397.1 2071 59.8
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2390.1 2072 59.5
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2379.7 2076 58.9
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2377.4 2079 58.9
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2373.2 2079 59.0
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2365.9 2111 58.0
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2365.1 2111 57.9
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2360.9 2111 58.0
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2349.3 2111 57.7
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2340.8 2078 59.4
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2328.1 2075 57.7
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2324.3 2075 57.8
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2324.3 2075 57.9
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2313.9 2075 57.5
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2308.5 2074 57.8
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2304.2 2074 57.9
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2301.9 2075 58.3
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2298.9 2072 57.2
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2286.1 2075 57.1
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2283.1 2074 56.8
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2281.1 2078 57.7
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2279.6 1951 59.5
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2274.2 2061 57.2
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2273.4 2077 57.8
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2261.9 2083 56.7
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2261.5 1953 59.7
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2260.3 1960 59.2
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2256.9 1858 62.0
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2248.0 2077 57.1
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2244.5 1990 58.5
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2231.8 2072 56.6
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2227.2 2077 56.6
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2218.0 2108 56.8
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2211.8 2076 55.4
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2199.1 2103 56.4
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2196.4 1940 58.8
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2185.2 2070 55.4
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2175.6 2075 54.4
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2162.9 2109 54.1
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2156.3 2109 54.1
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2154.8 2082 54.8
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2139.8 1988 57.4
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2135.1 2072 54.7
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2125.9 1952 57.4
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2110.5 2067 54.4
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2110.1 2079 54.0
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2104.3 1744 62.7
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2097.8 2068 53.0
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2068.5 2070 53.1
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2063.9 2073 52.8
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2061.6 1952 55.3
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2055.0 2068 52.9
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2054.3 2084 52.1
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2050.8 1957 54.8
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2030.0 2073 52.6
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2028.1 2074 52.6
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2024.2 1948 55.0
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2021.1 1946 54.1
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2015.4 1973 54.4
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2015.4 2062 52.6
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2013.8 1959 53.4
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2009.2 2061 52.3
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2009.2 1977 53.9
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2002.3 2060 51.4
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 1998.4 2082 51.4
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 1996.9 2060 51.5
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 1956.0 1955 52.4
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 1954.5 2019 52.3
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1842.4 2037 49.7
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 1832.4 1887 52.6
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1806.6 2088 47.2
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1738.4 1527 58.6
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1694.9 1337 62.9
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1659.4 1938 47.3
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1647.5 1661 52.9
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1634.4 2009 46.1
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1592.8 1462 57.2
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1568.1 1391 58.6
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1491.5 1384 56.6
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1415.6 1426 55.0
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1326.2 1104 61.6
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1320.8 1104 61.5
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1318.5 1104 61.2
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1230.3 1048 60.0
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1085.5 1059 53.0
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 4.1e-282 976.1 1405 41.2
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 3.2e-242 843.6 2063 30.9
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 3.0e-240 837.0 2065 30.4
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 3.1e-237 827.0 1492 35.9
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 2.3e-232 810.8 803 53.5
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 1.1e-226 792.0 2068 28.8
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 9.0e-205 719.2 823 48.4
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 6.9e-189 666.4 810 45.6
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 1.3e-187 662.1 698 52.1
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 2.7e-177 627.9 651 50.4
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 7.7e-172 609.8 2095 25.4
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 1.8e-168 598.6 770 42.5
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 4.4e-143 514.2 541 50.6
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 4.0e-120 438.0 320 64.7
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 4.6e-108 397.9 267 71.5
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 5.1e-99 367.9 321 61.7
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 2.1e-97 362.5 327 54.1
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 9.0e-96 357.1 268 61.2
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.6e-81 309.7 426 41.8
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 2.8e-73 282.3 221 60.6
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.9e-59 235.3 391 38.9
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 2.6e-58 232.6 440 38.0
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 8.2e-57 227.6 150 72.0
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 1.3e-54 220.3 277 46.2
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 6.1e-52 211.5 202 60.4
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.7e-51 208.0 274 46.0
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 4.8e-49 201.8 122 80.3
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 3.5e-47 195.7 153 63.4
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 6.5e-46 191.4 195 54.4
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 9.4e-45 187.6 123 70.7
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 6.7e-43 181.4 191 57.1
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 2.4e-40 172.9 311 35.7
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 2.9e-38 166.0 122 70.5
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.0e-35 157.5 110 70.9
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.4e-32 146.4 276 34.4
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 4.5e-31 142.1 211 40.3
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 4.5e-31 142.1 98 70.4
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 1.3e-30 140.6 740 22.7
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.1e-28 133.3 101 62.4
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.1e-28 133.3 121 54.5
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 3.7e-25 122.5 140 45.7
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 4.1e-24 119.0 162 42.0
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 2.0e-23 116.7 198 37.4
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 7.8e-23 114.8 82 69.5
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 1.0e-22 114.4 194 39.7
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 1.1e-16 94.4 119 43.7
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 5.4e-16 92.0 76 56.6
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 1.3e-14 87.4 72 61.1
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.7e-14 87.0 217 27.6
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.6e-14 85.1 121 36.4
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.0e-11 75.9 72 50.0
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 6.8e-11 75.1 183 29.5
Psat0s2975g0040 Pisum sativum HOM05D000832 ORTHO05D000900 7.0e-08 65.1 49 63.3
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 7.0e-08 65.1 49 63.3
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 7.0e-08 65.1 49 63.3
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.6e-07 63.9 40 80.0
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 2.7e-07 63.2 42 76.2


User provided reference genes

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