Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 0.0e+00 1734.9 885 100.0
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1184.9 934 69.2
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 0.0e+00 1083.9 801 72.7
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 3.8e-296 1021.5 805 69.9
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 4.3e-268 928.3 937 56.8
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 3.2e-263 912.1 939 56.9
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 4.2e-263 911.8 935 57.3
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 7.7e-257 891.0 933 55.0
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 1.1e-255 887.1 879 57.3
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 2.6e-252 875.9 932 53.8
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 2.9e-248 862.4 794 60.5
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 1.4e-245 853.6 926 53.9
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 1.4e-237 827.0 927 53.0
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 3.7e-235 818.9 850 55.6
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 8.3e-235 817.8 934 51.4
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 2.7e-233 812.8 900 52.9
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 3.5e-233 812.4 922 51.8
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 3.8e-232 808.9 806 57.9
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 2.1e-230 803.1 907 50.9
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 6.8e-229 798.1 791 58.2
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 2.6e-228 796.2 751 58.5
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 1.1e-226 790.8 936 50.1
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 3.1e-226 789.3 921 49.8
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 5.9e-225 785.0 814 55.9
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 1.0e-224 784.3 948 49.3
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 9.5e-223 777.7 871 50.1
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 4.9e-219 765.4 949 48.5
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 3.2e-218 762.7 768 56.5
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 3.2e-218 762.7 933 48.9
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 5.0e-216 755.4 942 48.3
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.5e-215 753.1 749 56.9
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 2.5e-215 753.1 788 55.8
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 7.3e-215 751.5 811 53.8
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 1.6e-214 750.4 949 47.6
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.7e-214 748.8 768 55.6
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.5e-212 743.8 941 48.1
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 2.0e-212 743.4 795 54.1
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 1.7e-211 740.3 948 47.4
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 1.9e-210 736.9 943 47.0
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 3.2e-210 736.1 934 47.8
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 9.2e-210 734.6 832 52.0
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 1.6e-209 733.8 943 47.0
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 2.7e-209 733.0 930 47.5
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 8.6e-208 728.0 940 46.1
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 7.3e-207 724.9 785 54.4
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 7.3e-207 724.9 938 46.7
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 4.0e-205 719.2 931 46.4
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 4.4e-204 715.7 922 46.7
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 1.9e-202 710.3 736 55.4
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 2.4e-202 709.9 799 52.7
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.6e-201 707.2 736 56.0
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 1.5e-199 700.7 926 46.1
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 3.6e-198 696.0 869 47.1
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 1.2e-196 691.0 927 46.0
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 6.4e-195 685.3 831 46.9
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 7.1e-194 681.8 921 46.0
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 1.2e-188 664.5 945 44.9
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 2.6e-188 663.3 891 45.2
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 1.7e-187 660.6 849 48.6
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 2.4e-186 656.8 819 48.2
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 1.0e-184 651.4 757 51.8
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 1.3e-179 634.4 957 42.1
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.9e-175 620.5 754 47.7
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 5.6e-175 619.0 795 47.4
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 2.1e-174 617.1 761 46.9
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 4.5e-172 609.4 949 42.3
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 6.4e-171 605.5 814 46.6
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 1.4e-170 604.4 758 46.3
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.3e-168 597.8 714 48.6
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.3e-166 591.3 832 44.0
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 3.7e-166 589.7 811 44.9
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 6.5e-163 578.9 725 48.3
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.8e-160 570.9 750 47.3
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 2.0e-156 557.4 747 47.3
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 7.6e-156 555.4 775 43.2
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 5.5e-154 549.3 763 45.2
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 1.2e-153 548.1 770 43.1
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 3.5e-153 546.6 769 43.4
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 1.5e-151 541.2 752 44.1
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 3.7e-150 536.6 758 43.1
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 4.8e-150 536.2 757 43.1
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 6.3e-150 535.8 758 43.1
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 4.1e-149 533.1 743 43.3
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 4.1e-149 533.1 761 43.1
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.7e-147 527.7 636 50.6
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 1.4e-144 518.1 771 41.4
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 3.3e-143 513.5 716 42.0
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.2e-129 468.4 773 39.3
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 5.2e-128 463.0 1015 34.9
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 7.5e-95 352.8 713 33.9
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 2.9e-78 297.7 310 54.5
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 6.4e-78 296.6 453 39.3
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.3e-75 288.9 362 47.2
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.9e-75 287.3 344 51.5
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 2.8e-73 281.2 350 47.4
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 3.4e-71 274.2 434 43.5
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 6.4e-62 243.4 860 26.7
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 1.1e-56 226.1 681 27.9
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 5.3e-48 197.2 431 36.4
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 2.1e-41 175.3 235 42.6
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 3.6e-36 157.9 154 48.1
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 4.6e-36 157.5 212 42.0
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 7.9e-36 156.8 345 33.3
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 4.3e-34 151.0 550 28.0
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.3e-33 149.4 925 21.7
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 3.8e-30 137.9 859 23.5
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 3.8e-30 137.9 276 35.9
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 1.2e-28 132.9 170 44.1
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 2.2e-17 95.5 85 52.9
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 4.8e-17 94.4 77 53.2
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 6.3e-17 94.0 96 52.1
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 8.2e-17 93.6 85 52.9
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 8.2e-17 93.6 77 53.2
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 1.1e-16 93.2 74 54.1
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.1e-16 91.7 124 49.2
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 9.1e-16 90.1 100 50.0
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 1.0e-14 86.7 186 37.1
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 5.0e-14 84.3 173 34.1
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 1.3e-09 69.7 87 41.4
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 4.8e-09 67.8 63 54.0
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 1.8e-08 65.9 51 56.9
CDE08G0044 Ceratophyllum demersum HOM05D002300 ORTHO05D002340 3.5e-07 61.6 175 26.9
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 3.5e-07 61.6 65 46.2
BcaC02g12397 Brassica carinata HOM05D002300 ORTHO05D002340 5.9e-07 60.8 113 28.3
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 5.9e-07 60.8 70 45.7
C04p04460 Brassica napus HOM05D002300 ORTHO05D002340 7.7e-07 60.5 113 27.4
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 1.7e-06 59.3 61 52.5
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 1.7e-06 59.3 152 23.7
AL4G14580 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 3.8e-06 58.2 73 52.1
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 5.0e-06 57.8 58 48.3
AT2G43410 Arabidopsis thaliana HOM05D002300 ORTHO05D002340 6.5e-06 57.4 113 24.8
Sp4g25510 Schrenkiella parvula HOM05D002300 ORTHO05D002340 8.5e-06 57.0 113 26.5


User provided reference genes

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