Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015538 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 8.6e-30 132.9 62 100.0
CSS0005745 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 9.5e-29 129.4 62 96.8
CSS0022322 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 6.1e-28 126.7 62 96.8
CSS0018434 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 3.4e-26 120.9 59 94.9
CSS0008706 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 2.9e-25 117.9 59 93.2
Dinv11213 Davidia involucrata HOM05D000050 ORTHO05D006639 1.3e-22 109.0 59 83.1
Dinv23194 Davidia involucrata HOM05D000050 ORTHO05D006639 6.6e-22 106.7 59 83.1
Rhsim12G0178500 Rhododendron simsii HOM05D000050 ORTHO05D006639 9.5e-21 102.8 61 82.0
Actinidia08894 Actinidia chinensis HOM05D000050 ORTHO05D006639 2.8e-20 101.3 59 78.0
Lj5A91T48 Lonicera japonica HOM05D000050 ORTHO05D006639 2.8e-20 101.3 59 76.3
Hund02480 Selenicereus undatus HOM05D000050 ORTHO05D006639 6.2e-20 100.1 59 76.3
AUR62029535 Chenopodium quinoa HOM05D000050 ORTHO05D006639 1.0e-19 99.4 59 72.9
AUR62034792 Chenopodium quinoa HOM05D000050 ORTHO05D006639 1.0e-19 99.4 59 72.9
ECA232G2135 Erigeron canadensis HOM05D000050 ORTHO05D006639 1.4e-19 99.0 60 75.0
Ah.11g046520 Amaranthus hybridus HOM05D000050 ORTHO05D006639 1.8e-19 98.6 59 72.9
EL10Ac5g11339 Beta vulgaris HOM05D000050 ORTHO05D006639 1.8e-19 98.6 59 74.6
DCAR_016360 Daucus carota HOM05D000050 ORTHO05D006639 2.3e-19 98.2 60 78.3
vmacro16743 Vaccinium macrocarpon HOM05D000050 ORTHO05D006639 3.1e-19 97.8 62 77.4
Lsat_1_v5_gn_4_83541 Lactuca sativa HOM05D000050 ORTHO05D006639 4.0e-19 97.4 59 74.6
Lj9A483T63 Lonicera japonica HOM05D000050 ORTHO05D006639 4.0e-19 97.4 59 74.6
Sc10g0010690 Simmondsia chinensis HOM05D000050 ORTHO05D006639 4.0e-19 97.4 59 74.6
Sc10g0010780 Simmondsia chinensis HOM05D000050 ORTHO05D006639 4.0e-19 97.4 59 74.6
CSS0046810 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 6.8e-19 96.7 62 79.0
ClCG06G018200 Citrullus lanatus HOM05D000050 ORTHO05D006639 8.9e-19 96.3 59 71.2
Cc04_g09520 Coffea canephora HOM05D000050 ORTHO05D006639 8.9e-19 96.3 59 74.6
Gohir.D12G194800 Gossypium hirsutum HOM05D000050 ORTHO05D006639 8.9e-19 96.3 59 71.2
THA.LOC104825033 Tarenaya hassleriana HOM05D000050 ORTHO05D006639 8.9e-19 96.3 59 71.2
MELO3C026177.2 Cucumis melo HOM05D000050 ORTHO05D006639 1.2e-18 95.9 59 71.2
Thhalv10014747m.g Eutrema salsugineum HOM05D000050 ORTHO05D006639 1.5e-18 95.5 59 69.5
PGR044G0139 Punica granatum HOM05D000050 ORTHO05D006639 1.5e-18 95.5 59 72.9
Duzib068G1461 Durio zibethinus HOM05D000050 ORTHO05D006639 2.0e-18 95.1 59 69.5
Thecc.03G136900 Theobroma cacao HOM05D000050 ORTHO05D006639 2.6e-18 94.7 59 69.5
Carub.0008s1086 Capsella rubella HOM05D000050 ORTHO05D006639 3.4e-18 94.4 59 66.1
COL.COLO4_16678 Corchorus olitorius HOM05D000050 ORTHO05D006639 3.4e-18 94.4 59 71.2
Gohir.A12G192700 Gossypium hirsutum HOM05D000050 ORTHO05D006639 3.4e-18 94.4 59 69.5
Gorai.008G209500 Gossypium raimondii HOM05D000050 ORTHO05D006639 3.4e-18 94.4 59 69.5
CiPaw.12G001900 Carya illinoinensis HOM05D000050 ORTHO05D006639 4.4e-18 94.0 59 71.2
Duzib084G0345 Durio zibethinus HOM05D000050 ORTHO05D006639 4.4e-18 94.0 59 69.5
Eucgr.K02668 Eucalyptus grandis HOM05D000050 ORTHO05D006639 4.4e-18 94.0 59 69.5
CsaV3_1G000230 Cucumis sativus L. HOM05D000050 ORTHO05D006639 5.8e-18 93.6 59 69.5
HanXRQChr16g0498781 Helianthus annuus HOM05D000050 ORTHO05D006639 5.8e-18 93.6 59 72.9
TWI14G0127 Tripterygium wilfordii HOM05D000050 ORTHO05D006639 5.8e-18 93.6 59 71.2
Ciclev10032815m.g Citrus clementina HOM05D000050 ORTHO05D006639 7.5e-18 93.2 59 67.8
Potri.012G104100 Populus trichocarpa HOM05D000050 ORTHO05D006639 7.5e-18 93.2 59 67.8
Duzib205G0344 Durio zibethinus HOM05D000050 ORTHO05D006639 9.8e-18 92.8 59 67.8
Potri.015G103400 Populus trichocarpa HOM05D000050 ORTHO05D006639 9.8e-18 92.8 59 69.5
CiPaw.11G002500 Carya illinoinensis HOM05D000050 ORTHO05D006639 1.3e-17 92.4 59 69.5
Oeu058110.1 Olea europaea HOM05D000050 ORTHO05D006639 1.3e-17 92.4 60 73.3
BcaC01g06058 Brassica carinata HOM05D000050 ORTHO05D006639 1.7e-17 92.0 59 67.8
A03p16530 Brassica napus HOM05D000050 ORTHO05D006639 1.7e-17 92.0 59 67.8
C03p19460 Brassica napus HOM05D000050 ORTHO05D006639 1.7e-17 92.0 59 67.8
BolC3t14327H Brassica oleracea HOM05D000050 ORTHO05D006639 1.7e-17 92.0 59 67.8
BraA03t10940Z Brassica rapa HOM05D000050 ORTHO05D006639 1.7e-17 92.0 59 67.8
Sabra15G0122700 Salix brachista HOM05D000050 ORTHO05D006639 1.7e-17 92.0 59 69.5
Nitab4.5_0000033g0120 Nicotiana tabacum HOM05D000050 ORTHO05D006639 2.2e-17 91.7 58 74.1
AL8G25050 Arabidopsis lyrata HOM05D000050 ORTHO05D006639 2.9e-17 91.3 59 66.1
MSTRG.4623 Avicennia marina HOM05D000050 ORTHO05D006639 2.9e-17 91.3 60 70.0
CAN.G65.109 Capsicum annuum HOM05D000050 ORTHO05D006639 2.9e-17 91.3 58 72.4
Cpa.g.sc4.125 Carica papaya HOM05D000050 ORTHO05D006639 2.9e-17 91.3 59 67.8
Ca_16073_v3 Cicer arietinum L. HOM05D000050 ORTHO05D006639 2.9e-17 91.3 59 69.5
SalBow1G8711 Salvia bowleyana HOM05D000050 ORTHO05D006639 2.9e-17 91.3 60 73.3
Aa31LG3G7350 Aethionema arabicum HOM05D000050 ORTHO05D006639 3.7e-17 90.9 58 67.2
AT5G50870 Arabidopsis thaliana HOM05D000050 ORTHO05D006639 3.7e-17 90.9 59 64.4
FAN04G2695 Fragaria x ananassa HOM05D000050 ORTHO05D006639 3.7e-17 90.9 60 71.7
HanXRQChr09g0273641 Helianthus annuus HOM05D000050 ORTHO05D006639 3.7e-17 90.9 59 71.2
Peaxi162Scf01064g00237 Petunia axillaris HOM05D000050 ORTHO05D006639 3.7e-17 90.9 58 74.1
Haze_07125 Corylus avellana HOM05D000050 ORTHO05D006639 4.9e-17 90.5 59 69.5
Migut.O00353 Erythranthe guttata HOM05D000050 ORTHO05D006639 4.9e-17 90.5 60 71.7
Oeu043134.1 Olea europaea HOM05D000050 ORTHO05D006639 4.9e-17 90.5 60 71.7
Sp6g13010 Schrenkiella parvula HOM05D000050 ORTHO05D006639 4.9e-17 90.5 59 66.1
Sed0004769 Sechium edule HOM05D000050 ORTHO05D006639 4.9e-17 90.5 59 69.5
Manes.06G124300 Manihot esculenta HOM05D000050 ORTHO05D006639 6.4e-17 90.1 59 66.1
CDE02G3954 Ceratophyllum demersum HOM05D000050 ORTHO05D006639 1.1e-16 89.4 60 63.3
FAN08G2874 Fragaria x ananassa HOM05D000050 ORTHO05D006639 1.1e-16 89.4 60 70.0
FAN13G1099 Fragaria x ananassa HOM05D000050 ORTHO05D006639 1.1e-16 89.4 60 70.0
Manes.14G047100 Manihot esculenta HOM05D000050 ORTHO05D006639 1.1e-16 89.4 59 66.1
Solyc06g072570.4 Solanum lycopersicum HOM05D000050 ORTHO05D006639 1.1e-16 89.4 58 70.7
PGSC0003DMG400027041 Solanum tuberosum HOM05D000050 ORTHO05D006639 1.1e-16 89.4 58 70.7
CARHR257380 Cardamine hirsuta HOM05D000050 ORTHO05D006639 1.4e-16 89.0 59 64.4
CDE09G0996 Ceratophyllum demersum HOM05D000050 ORTHO05D006639 1.4e-16 89.0 60 63.3
Atru.chr6.1890 Acer truncatum HOM05D000050 ORTHO05D006639 2.4e-16 88.2 59 64.4
FvH4_5g09050 Fragaria vesca HOM05D000050 ORTHO05D006639 2.4e-16 88.2 60 70.0
FAN18G0611 Fragaria x ananassa HOM05D000050 ORTHO05D006639 2.4e-16 88.2 60 70.0
Aqoxy3G01724 Aquilegia oxysepala HOM05D000050 ORTHO05D006639 3.2e-16 87.8 61 65.6
arahy.Tifrunner.gnm1.ann1.Q7T1PG Arachis hypogaea HOM05D000050 ORTHO05D006639 3.2e-16 87.8 59 67.8
arahy.Tifrunner.gnm1.ann1.Z2A8SP Arachis hypogaea HOM05D000050 ORTHO05D006639 3.2e-16 87.8 59 67.8
Phvul.009G163400 Phaseolus vulgaris HOM05D000050 ORTHO05D006639 3.2e-16 87.8 59 66.1
Prupe.5G145200 Prunus persica HOM05D000050 ORTHO05D006639 3.2e-16 87.8 60 70.0
Lalb_Chr11g0069331 Lupinus albus HOM05D000050 ORTHO05D006639 4.1e-16 87.4 59 64.4
Lalb_Chr23g0272971 Lupinus albus HOM05D000050 ORTHO05D006639 4.1e-16 87.4 59 66.1
RcHm_v2.0_Chr7g0189161 Rosa chinensis HOM05D000050 ORTHO05D006639 9.2e-16 86.3 60 70.0
VMungo1309G1070 Vigna mungo HOM05D000050 ORTHO05D006639 9.2e-16 86.3 59 64.4
TAR622G0592 Trochodendron aralioides HOM05D000050 ORTHO05D006639 1.2e-15 85.9 59 66.1
Glyma.06G166300 Glycine max HOM05D000050 ORTHO05D006639 1.6e-15 85.5 59 66.1
TPR.G21583 Trifolium pratense HOM05D000050 ORTHO05D006639 1.6e-15 85.5 59 67.8
Nitab4.5_0006857g0010 Nicotiana tabacum HOM05D000050 ORTHO05D006639 2.0e-15 85.1 61 68.9
Nn3g16340 Nelumbo nucifera HOM05D000050 ORTHO05D006639 2.7e-15 84.7 59 64.4
CANSAT80G2273 Cannabis sativa HOM05D000050 ORTHO05D006639 3.5e-15 84.3 60 66.7
Glyma.04G199200 Glycine max HOM05D000050 ORTHO05D006639 3.5e-15 84.3 59 66.1
MD06G1134200 Malus domestica HOM05D000050 ORTHO05D006639 4.6e-15 84.0 60 66.7
PSO017G1401 Papaver somniferum HOM05D000050 ORTHO05D006639 4.6e-15 84.0 60 63.3
PSO478G4241 Papaver somniferum HOM05D000050 ORTHO05D006639 4.6e-15 84.0 60 63.3
Psat5g053600 Pisum sativum HOM05D000050 ORTHO05D006639 6.0e-15 83.6 59 62.7
MD14G1150500 Malus domestica HOM05D000050 ORTHO05D006639 7.8e-15 83.2 60 66.7
Lj1g0020356 Lotus japonicus HOM05D000050 ORTHO05D006639 1.0e-14 82.8 60 66.7
Medtr3g098780 Medicago truncatula HOM05D000050 ORTHO05D006639 1.3e-14 82.4 59 64.4
unitig_22.g5343 Utricularia gibba HOM05D000050 ORTHO05D006639 1.7e-14 82.0 59 66.1
Zm00001eb363890 Zea mays HOM05D000050 ORTHO05D006639 1.5e-13 79.0 61 62.3
Os01g0925800 Oryza sativa ssp. japonica HOM05D000050 ORTHO05D006639 2.5e-13 78.2 61 62.3
ATR0582G280 Amborella trichopoda HOM05D000050 ORTHO05D006639 3.3e-13 77.8 59 59.3
Gohir.D11G040950 Gossypium hirsutum HOM05D000050 ORTHO05D006639 4.3e-13 77.4 60 60.0
Gohir.A11G037700 Gossypium hirsutum HOM05D000050 ORTHO05D006639 5.6e-13 77.0 60 60.0
Gorai.007G044100 Gossypium raimondii HOM05D000050 ORTHO05D006639 2.8e-12 74.7 55 61.8
HPP92_003184 Vanilla planifolia HOM05D000050 ORTHO05D006639 4.0e-11 70.9 60 60.0
AagrBONN_evm.TU.Sc2ySwM_344.919 Anthoceros agrestis HOM05D000050 ORTHO05D006639 5.2e-11 70.5 59 50.8
HanXRQChr06g0175201 Helianthus annuus HOM05D000050 ORTHO05D006639 6.8e-11 70.1 59 49.2
SEGI_04180 Sequoiadendron giganteum HOM05D000050 ORTHO05D006639 6.8e-11 70.1 61 59.0
HPP92_025291 Vanilla planifolia HOM05D000050 ORTHO05D006639 2.0e-10 68.6 63 58.7
SMO111G0206 Selaginella moellendorffii HOM05D000050 ORTHO05D006639 2.6e-10 68.2 59 52.5
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 3.4e-10 67.8 58 55.2
Mapoly0127s0049 Marchantia polymorpha HOM05D000050 ORTHO05D006639 4.4e-10 67.4 59 52.5
Hma1.2p1_1524F.1_g288830 Hydrangea macrophylla HOM05D000050 ORTHO05D006639 1.7e-09 65.5 61 55.7
Pp3c24_12210 Physcomitrium patens HOM05D000050 ORTHO05D006639 2.9e-09 64.7 59 52.5
Lsat_1_v5_gn_3_31580 Lactuca sativa HOM05D000050 ORTHO05D006639 6.4e-09 63.5 59 44.1
Cre01.g046850 Chlamydomonas reinhardtii HOM05D000050 ORTHO05D006639 1.4e-08 62.4 57 49.1
SEGI_30300 Sequoiadendron giganteum HOM05D000050 ORTHO05D006639 1.4e-08 62.4 60 50.0
MCO05G358 Micromonas commoda HOM05D000050 ORTHO05D006639 1.0e-06 56.2 57 45.6
Sp3g11760 Schrenkiella parvula HOM05D000050 ORTHO05D009008 1.0e-06 56.2 54 53.7
Aa31LG8G750 Aethionema arabicum HOM05D000050 ORTHO05D009008 1.3e-06 55.8 54 51.9
Cfa024518 Carpinus fangiana HOM05D000050 ORTHO05D006639 1.7e-06 55.5 56 44.6
ECA246G4432 Erigeron canadensis HOM05D000050 ORTHO05D006639 2.3e-06 55.1 54 44.4
MELO3C014684.2 Cucumis melo HOM05D000050 ORTHO05D009008 3.0e-06 54.7 54 53.7
CsaV3_4G023310 Cucumis sativus L. HOM05D000050 ORTHO05D009008 3.0e-06 54.7 54 53.7
ClCG02G024020 Citrullus lanatus HOM05D000050 ORTHO05D009008 3.9e-06 54.3 54 53.7
PRCOL_00005472 Prasinoderma coloniale HOM05D000050 ORTHO05D006639 3.9e-06 54.3 60 45.0
AL3G25460 Arabidopsis lyrata HOM05D000050 ORTHO05D009008 5.1e-06 53.9 54 51.9
Carub.0003s1303 Capsella rubella HOM05D000050 ORTHO05D009008 5.1e-06 53.9 54 51.9
GSVIVG01025431001 Vitis vinifera HOM05D000050 ORTHO05D009008 5.1e-06 53.9 54 50.0
AT3G13550 Arabidopsis thaliana HOM05D000050 ORTHO05D009008 6.6e-06 53.5 54 51.9
Os07g0577400 Oryza sativa ssp. japonica HOM05D000050 ORTHO05D009008 6.6e-06 53.5 54 50.0
THA.LOC104815666 Tarenaya hassleriana HOM05D000050 ORTHO05D009008 6.6e-06 53.5 54 51.9
Actinidia30428 Actinidia chinensis HOM05D000050 ORTHO05D009008 8.6e-06 53.1 54 50.0
SGA_v2.0_scaffold3G01662 Striga asiatica HOM05D000050 ORTHO05D009008 8.6e-06 53.1 54 51.9


User provided reference genes

Program Settings