Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015426 Camellia sinensis var. sinensis HOM05D005735 ORTHO05D006547 7.9e-73 276.9 133 100.0
CSS0004316 Camellia sinensis var. sinensis HOM05D005735 ORTHO05D006547 2.8e-54 215.3 109 95.4
Dinv35555 Davidia involucrata HOM05D005735 ORTHO05D006547 7.2e-50 200.7 138 71.7
Dinv37132 Davidia involucrata HOM05D005735 ORTHO05D006547 1.2e-49 199.9 138 71.0
Glyma.03G069600 Glycine max HOM05D005735 ORTHO05D006547 1.2e-49 199.9 137 71.5
Actinidia29177 Actinidia chinensis HOM05D005735 ORTHO05D006547 4.7e-49 198.0 138 70.3
arahy.Tifrunner.gnm1.ann1.879M1U Arachis hypogaea HOM05D005735 ORTHO05D006547 6.1e-49 197.6 138 69.6
arahy.Tifrunner.gnm1.ann1.ECZP7J Arachis hypogaea HOM05D005735 ORTHO05D006547 6.1e-49 197.6 138 69.6
vmacro08634 Vaccinium macrocarpon HOM05D005735 ORTHO05D006547 6.1e-49 197.6 138 71.0
Lj3g0007667 Lotus japonicus HOM05D005735 ORTHO05D006547 7.9e-49 197.2 137 71.5
Rhsim04G0162200 Rhododendron simsii HOM05D005735 ORTHO05D006547 1.4e-48 196.4 138 70.3
Hma1.2p1_0766F.1_g215130 Hydrangea macrophylla HOM05D005735 ORTHO05D006547 3.0e-48 195.3 138 70.3
Phvul.010G015300 Phaseolus vulgaris HOM05D005735 ORTHO05D006547 3.0e-48 195.3 137 69.3
Nn2g13495 Nelumbo nucifera HOM05D005735 ORTHO05D006547 2.0e-47 192.6 138 67.4
MD04G1136300 Malus domestica HOM05D005735 ORTHO05D006547 2.6e-47 192.2 109 80.7
RcHm_v2.0_Chr3g0465081 Rosa chinensis HOM05D005735 ORTHO05D006547 3.3e-47 191.8 109 80.7
TWI77G0204 Tripterygium wilfordii HOM05D005735 ORTHO05D006547 3.3e-47 191.8 136 68.4
Glyma.01G099700 Glycine max HOM05D005735 ORTHO05D006547 4.4e-47 191.4 131 71.0
HanXRQChr06g0177411 Helianthus annuus HOM05D005735 ORTHO05D006547 5.7e-47 191.0 133 69.9
MD12G1150800 Malus domestica HOM05D005735 ORTHO05D006547 5.7e-47 191.0 109 79.8
PGR031G0186 Punica granatum HOM05D005735 ORTHO05D006547 5.7e-47 191.0 138 67.4
Cfa017317 Carpinus fangiana HOM05D005735 ORTHO05D006547 7.4e-47 190.7 138 68.1
Nn2g13496 Nelumbo nucifera HOM05D005735 ORTHO05D006547 7.4e-47 190.7 109 78.9
TAR636G0229 Trochodendron aralioides HOM05D005735 ORTHO05D006547 7.4e-47 190.7 138 69.6
Actinidia13829 Actinidia chinensis HOM05D005735 ORTHO05D006547 9.7e-47 190.3 138 68.1
ECA236G4371 Erigeron canadensis HOM05D005735 ORTHO05D006547 9.7e-47 190.3 133 69.9
QL07p028744 Quercus lobata HOM05D005735 ORTHO05D006547 9.7e-47 190.3 128 72.7
Lsat_1_v5_gn_8_84641 Lactuca sativa HOM05D005735 ORTHO05D006547 1.3e-46 189.9 138 66.7
FvH4_6g12970 Fragaria vesca HOM05D005735 ORTHO05D006547 1.7e-46 189.5 109 78.9
COL.COLO4_14723 Corchorus olitorius HOM05D005735 ORTHO05D006547 2.2e-46 189.1 109 78.9
Duzib093G1348 Durio zibethinus HOM05D005735 ORTHO05D006547 2.2e-46 189.1 109 79.8
Gohir.D09G149000 Gossypium hirsutum HOM05D005735 ORTHO05D006547 2.2e-46 189.1 109 78.9
Gorai.006G170200 Gossypium raimondii HOM05D005735 ORTHO05D006547 2.2e-46 189.1 109 78.9
CiPaw.09G199400 Carya illinoinensis HOM05D005735 ORTHO05D006547 2.8e-46 188.7 128 73.4
Gohir.A09G153300 Gossypium hirsutum HOM05D005735 ORTHO05D006547 2.8e-46 188.7 109 78.0
Sed0015161 Sechium edule HOM05D005735 ORTHO05D006547 2.8e-46 188.7 109 79.8
Ciclev10012178m.g Citrus clementina HOM05D005735 ORTHO05D006547 4.8e-46 188.0 109 78.0
Medtr4g020090 Medicago truncatula HOM05D005735 ORTHO05D006547 4.8e-46 188.0 109 79.8
TPR.G17885 Trifolium pratense HOM05D005735 ORTHO05D006547 4.8e-46 188.0 137 67.9
Aqoxy2G02353 Aquilegia oxysepala HOM05D005735 ORTHO05D006547 6.3e-46 187.6 137 68.6
MBI14_g09010_MAGBIO Magnolia biondii HOM05D005735 ORTHO05D006547 6.3e-46 187.6 108 81.5
Nitab4.5_0000362g0060 Nicotiana tabacum HOM05D005735 ORTHO05D006547 8.2e-46 187.2 127 72.4
Psat7g240200 Pisum sativum HOM05D005735 ORTHO05D006547 8.2e-46 187.2 132 70.5
Cc06_g02200 Coffea canephora HOM05D005735 ORTHO05D006547 1.1e-45 186.8 133 69.9
Lalb_Chr22g0358651 Lupinus albus HOM05D005735 ORTHO05D006547 1.1e-45 186.8 110 79.1
GSVIVG01034092001 Vitis vinifera HOM05D005735 ORTHO05D006547 1.1e-45 186.8 134 68.7
CAN.G229.30 Capsicum annuum HOM05D005735 ORTHO05D006547 1.4e-45 186.4 127 74.0
Potri.006G091000 Populus trichocarpa HOM05D005735 ORTHO05D006547 1.4e-45 186.4 139 69.1
Solyc09g011300.3 Solanum lycopersicum HOM05D005735 ORTHO05D006547 1.4e-45 186.4 127 71.7
Manes.09G096300 Manihot esculenta HOM05D005735 ORTHO05D006547 1.8e-45 186.0 138 67.4
Prupe.6G262400 Prunus persica HOM05D005735 ORTHO05D006547 1.8e-45 186.0 107 76.6
Haze_20854 Corylus avellana HOM05D005735 ORTHO05D006547 2.4e-45 185.7 138 65.9
Haze_20857 Corylus avellana HOM05D005735 ORTHO05D006547 2.4e-45 185.7 138 65.9
Lalb_Chr24g0401021 Lupinus albus HOM05D005735 ORTHO05D006547 2.4e-45 185.7 138 66.7
PGSC0003DMG400008888 Solanum tuberosum HOM05D005735 ORTHO05D006547 3.1e-45 185.3 98 86.7
Thecc.05G031800 Theobroma cacao HOM05D005735 ORTHO05D006547 3.1e-45 185.3 109 76.1
Sopen09g006020 Solanum pennellii HOM05D005735 ORTHO05D006547 5.3e-45 184.5 127 70.9
CsaV3_4G025430 Cucumis sativus L. HOM05D005735 ORTHO05D006547 7.0e-45 184.1 98 84.7
MELO3C003165.2 Cucumis melo HOM05D005735 ORTHO05D006547 9.1e-45 183.7 98 84.7
Lj2A88G66 Lonicera japonica HOM05D005735 ORTHO05D006547 9.1e-45 183.7 108 83.3
CiPaw.10G148500 Carya illinoinensis HOM05D005735 ORTHO05D006547 1.2e-44 183.3 138 63.8
FAN05G2836 Fragaria x ananassa HOM05D005735 ORTHO05D006547 2.0e-44 182.6 115 74.8
Atru.chr8.2067 Acer truncatum HOM05D005735 ORTHO05D006547 2.6e-44 182.2 138 65.9
THA.LOC104805616 Tarenaya hassleriana HOM05D005735 ORTHO05D006547 2.6e-44 182.2 124 70.2
Eucgr.B02718 Eucalyptus grandis HOM05D005735 ORTHO05D006547 3.5e-44 181.8 131 67.9
VMungo0331G1562 Vigna mungo HOM05D005735 ORTHO05D006547 4.5e-44 181.4 131 67.9
SGA_v2.0_scaffold75G24970 Striga asiatica HOM05D005735 ORTHO05D006547 5.9e-44 181.0 136 64.0
ATR0559G328 Amborella trichopoda HOM05D005735 ORTHO05D006547 7.7e-44 180.6 138 62.3
Cpa.g.sc56.31 Carica papaya HOM05D005735 ORTHO05D006547 1.3e-43 179.9 99 81.8
Aa31sc27G110 Aethionema arabicum HOM05D005735 ORTHO05D006547 1.7e-43 179.5 137 62.0
Migut.J00281 Erythranthe guttata HOM05D005735 ORTHO05D006547 2.2e-43 179.1 138 63.8
Thhalv10010595m.g Eutrema salsugineum HOM05D005735 ORTHO05D006547 2.2e-43 179.1 137 63.5
Sc01g0004650 Simmondsia chinensis HOM05D005735 ORTHO05D006547 2.2e-43 179.1 109 72.5
BraA09t40153Z Brassica rapa HOM05D005735 ORTHO05D006547 2.9e-43 178.7 139 62.6
CANSAT35G1842 Cannabis sativa HOM05D005735 ORTHO05D006547 2.9e-43 178.7 137 65.0
PSO339G4903 Papaver somniferum HOM05D005735 ORTHO05D006547 2.9e-43 178.7 105 78.1
PSO513G0055 Papaver somniferum HOM05D005735 ORTHO05D006547 2.9e-43 178.7 105 78.1
Peaxi162Scf00318g00510 Petunia axillaris HOM05D005735 ORTHO05D006547 3.8e-43 178.3 118 73.7
CARHR163810 Cardamine hirsuta HOM05D005735 ORTHO05D006547 5.0e-43 177.9 139 64.7
AT3G53900 Arabidopsis thaliana HOM05D005735 ORTHO05D006547 6.5e-43 177.6 110 76.4
A09p46850 Brassica napus HOM05D005735 ORTHO05D006547 8.5e-43 177.2 139 61.9
BcaB02g07762 Brassica carinata HOM05D005735 ORTHO05D006547 1.4e-42 176.4 137 62.0
BcaC08g44651 Brassica carinata HOM05D005735 ORTHO05D006547 1.4e-42 176.4 137 62.0
A07p21840 Brassica napus HOM05D005735 ORTHO05D006547 1.4e-42 176.4 137 62.0
C06p21670 Brassica napus HOM05D005735 ORTHO05D006547 1.4e-42 176.4 137 62.0
BolC6t37356H Brassica oleracea HOM05D005735 ORTHO05D006547 1.4e-42 176.4 137 62.0
BraA07t29866Z Brassica rapa HOM05D005735 ORTHO05D006547 1.4e-42 176.4 137 62.0
Hund16974 Selenicereus undatus HOM05D005735 ORTHO05D006547 1.4e-42 176.4 140 60.7
HPP92_027961 Vanilla planifolia HOM05D005735 ORTHO05D006547 1.4e-42 176.4 108 75.9
AL5G34880 Arabidopsis lyrata HOM05D005735 ORTHO05D006547 2.5e-42 175.6 108 74.1
BcaB01g00229 Brassica carinata HOM05D005735 ORTHO05D006547 2.5e-42 175.6 137 62.0
FAN02G2999 Fragaria x ananassa HOM05D005735 ORTHO05D006547 3.2e-42 175.3 95 84.2
EL10Ac1g00952 Beta vulgaris HOM05D005735 ORTHO05D006547 4.2e-42 174.9 132 63.6
Ca_20080_v3 Cicer arietinum L. HOM05D005735 ORTHO05D006547 4.2e-42 174.9 118 71.2
Sp5g08500 Schrenkiella parvula HOM05D005735 ORTHO05D006547 9.4e-42 173.7 137 62.8
BcaC07g39745 Brassica carinata HOM05D000012 ORTHO05D002345 1.2e-41 173.3 137 61.3
BolC8t50518H Brassica oleracea HOM05D005735 ORTHO05D006547 1.2e-41 173.3 137 61.3
DCAR_028771 Daucus carota HOM05D005735 ORTHO05D006547 1.2e-41 173.3 136 59.6
Carub.0005s2048 Capsella rubella HOM05D005735 ORTHO05D006547 1.6e-41 172.9 130 65.4
C08p29170 Brassica napus HOM05D005735 ORTHO05D006547 2.1e-41 172.6 137 61.3
AUR62004273 Chenopodium quinoa HOM05D005735 ORTHO05D006547 2.7e-41 172.2 139 59.7
HanXRQChr04g0124581 Helianthus annuus HOM05D005735 ORTHO05D006547 1.4e-40 169.9 133 63.2
CDE04G2966 Ceratophyllum demersum HOM05D005735 ORTHO05D006547 1.8e-40 169.5 135 61.5
Os05g0455700 Oryza sativa ssp. japonica HOM05D005735 ORTHO05D006547 1.8e-40 169.5 124 67.7
CSS0042696 Camellia sinensis var. sinensis HOM05D005735 ORTHO05D006547 2.3e-40 169.1 91 86.8
Duzib128G0016 Durio zibethinus HOM05D005735 ORTHO05D006547 3.0e-40 168.7 89 86.5
Oeu001404.1 Olea europaea HOM05D005735 ORTHO05D006547 3.9e-40 168.3 101 75.2
Zm00001eb289550 Zea mays HOM05D005735 ORTHO05D006547 1.5e-39 166.4 124 66.9
Sabra06G0068800 Salix brachista HOM05D005735 ORTHO05D006547 2.0e-39 166.0 100 78.0
AUR62033384 Chenopodium quinoa HOM05D005735 ORTHO05D006547 1.3e-38 163.3 150 55.3
Mapoly0035s0109 Marchantia polymorpha HOM05D005735 ORTHO05D006547 2.0e-36 156.0 138 52.9
Pp3c9_24300 Physcomitrium patens HOM05D005735 ORTHO05D006547 1.1e-34 150.2 131 55.7
AagrBONN_evm.TU.Sc2ySwM_228.3184 Anthoceros agrestis HOM05D005735 ORTHO05D006547 4.2e-34 148.3 93 68.8
Hund27335 Selenicereus undatus HOM05D005735 ORTHO05D006547 4.2e-34 148.3 90 72.2
DCAR_012131 Daucus carota HOM05D005735 ORTHO05D006547 7.2e-34 147.5 85 74.1
SMO147G0009 Selaginella moellendorffii HOM05D005735 ORTHO05D006547 1.6e-33 146.4 118 57.6
Migut.J00280 Erythranthe guttata HOM05D005735 ORTHO05D006547 1.4e-32 143.3 89 73.0
ClCG04G007800 Citrullus lanatus HOM05D005735 ORTHO05D006547 4.4e-31 138.3 109 62.4
CBR_g17719 Chara braunii HOM05D005735 ORTHO05D006547 3.7e-30 135.2 124 50.8
MCO15G321 Micromonas commoda HOM05D005735 ORTHO05D006547 1.7e-27 126.3 120 49.2
Nitab4.5_0006535g0030 Nicotiana tabacum HOM05D005735 ORTHO05D006547 8.5e-27 124.0 127 55.1
Ah.05g175740 Amaranthus hybridus HOM05D005735 ORTHO05D006547 4.2e-26 121.7 140 46.4
Zm00001eb412190 Zea mays HOM05D005735 ORTHO05D006547 1.6e-25 119.8 97 56.7
FAN14G2901 Fragaria x ananassa HOM05D005735 ORTHO05D006547 1.5e-23 113.2 60 88.3
CANSAT35G0868 Cannabis sativa HOM05D005735 ORTHO05D006547 7.5e-23 110.9 89 62.9
Cre11.g467778 Chlamydomonas reinhardtii HOM05D005735 ORTHO05D006547 2.8e-22 109.0 128 41.4
PRCOL_00001881 Prasinoderma coloniale HOM05D005735 ORTHO05D006547 8.3e-22 107.5 111 45.0
unitig_578.g15880 Utricularia gibba HOM05D005735 ORTHO05D006547 8.3e-22 107.5 60 81.7
Lsat_1_v5_gn_9_19861 Lactuca sativa HOM05D005735 ORTHO05D006547 1.6e-20 103.2 60 80.0
BraA05t19030Z Brassica rapa HOM05D011067 ORTHO05D028343 4.7e-17 91.7 95 48.4
Solyc03g063860.1 Solanum lycopersicum HOM05D005735 ORTHO05D006547 4.7e-17 91.7 101 48.5
BraA09t38956Z Brassica rapa HOM05D011067 ORTHO05D028343 1.8e-16 89.7 95 47.4
Cpa.g.sc56.35 Carica papaya HOM05D005735 ORTHO05D006547 9.5e-10 67.4 46 56.5
C03p64990 Brassica napus HOM05D011067 ORTHO05D014965 1.6e-09 66.6 54 55.6
BcaC05g28138 Brassica carinata HOM05D011067 ORTHO05D014965 2.1e-09 66.2 49 59.2
A03p21220 Brassica napus HOM05D011067 ORTHO05D014965 2.8e-09 65.9 54 55.6
C01p21930 Brassica napus HOM05D011067 ORTHO05D014965 2.8e-09 65.9 54 55.6
BcaC03g14360 Brassica carinata HOM05D011067 ORTHO05D014965 4.7e-09 65.1 54 55.6
BolC3t18757H Brassica oleracea HOM05D011067 ORTHO05D028343 1.0e-08 63.9 80 42.5
BcaC04g22813 Brassica carinata HOM05D011067 ORTHO05D014965 8.9e-08 60.8 54 53.7
C09p15120 Brassica napus HOM05D011067 ORTHO05D014965 8.9e-08 60.8 54 53.7
BolC9t54418H Brassica oleracea HOM05D011067 ORTHO05D028343 5.8e-07 58.2 80 41.2
BcaB02g08502 Brassica carinata HOM05D001257 ORTHO05D009517 7.5e-07 57.8 102 36.3
MSTRG.5635 Avicennia marina HOM05D005735 ORTHO05D006547 8.3e-06 54.3 89 42.7


User provided reference genes

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