Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015267 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D009221 4.9e-88 327.8 168 100.0
CSS0005673 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D009221 6.5e-56 221.1 211 63.5
Actinidia34334 Actinidia chinensis HOM05D002933 ORTHO05D009221 3.7e-27 125.6 152 50.7
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 5.9e-25 118.2 148 48.6
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 4.2e-23 112.1 152 44.7
Actinidia34349 Actinidia chinensis HOM05D002933 ORTHO05D009221 5.5e-23 111.7 69 76.8
Cpa.g.sc1.348 Carica papaya HOM05D002933 ORTHO05D009221 1.2e-22 110.5 152 44.7
Nn3g20127 Nelumbo nucifera HOM05D002933 ORTHO05D009221 2.1e-22 109.8 147 44.2
Thecc.10G052300 Theobroma cacao HOM05D002933 ORTHO05D009221 2.7e-22 109.4 152 44.1
Gohir.D04G061800 Gossypium hirsutum HOM05D002933 ORTHO05D009221 8.0e-22 107.8 152 44.1
Gorai.012G069100 Gossypium raimondii HOM05D002933 ORTHO05D009221 8.0e-22 107.8 152 44.1
Hma1.2p1_0402F.1_g144930 Hydrangea macrophylla HOM05D002933 ORTHO05D009221 1.0e-21 107.5 148 46.6
Peaxi162Scf00681g00436 Petunia axillaris HOM05D002933 ORTHO05D009221 1.4e-21 107.1 130 47.7
Oeu038794.2 Olea europaea HOM05D002933 ORTHO05D009221 3.0e-21 105.9 162 42.6
CAN.G104.6 Capsicum annuum HOM05D002933 ORTHO05D009221 5.2e-21 105.1 147 44.2
HanXRQChr07g0200961 Helianthus annuus HOM05D002933 ORTHO05D009221 1.2e-20 104.0 69 73.9
ECA238G2744 Erigeron canadensis HOM05D002933 ORTHO05D009221 2.6e-20 102.8 69 71.0
Gohir.A05G350800 Gossypium hirsutum HOM05D002933 ORTHO05D009221 2.6e-20 102.8 152 42.8
Lsat_1_v5_gn_2_115981 Lactuca sativa HOM05D002933 ORTHO05D009221 2.6e-20 102.8 69 72.5
Nitab4.5_0001719g0060 Nicotiana tabacum HOM05D002933 ORTHO05D009221 1.7e-19 100.1 69 69.6
Aqoxy4G03026 Aquilegia oxysepala HOM05D002933 ORTHO05D009221 2.8e-19 99.4 149 43.6
Cc02_g08380 Coffea canephora HOM05D002933 ORTHO05D009221 3.7e-19 99.0 150 41.3
PGSC0003DMG400026667 Solanum tuberosum HOM05D002933 ORTHO05D009221 3.7e-19 99.0 147 41.5
RcHm_v2.0_Chr1g0365771 Rosa chinensis HOM05D002933 ORTHO05D009221 4.9e-19 98.6 152 40.8
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 6.3e-19 98.2 152 38.2
COL.COLO4_14921 Corchorus olitorius HOM05D002933 ORTHO05D009221 6.3e-19 98.2 152 41.4
Solyc10g054420.2 Solanum lycopersicum HOM05D002933 ORTHO05D009221 8.3e-19 97.8 69 66.7
Sopen10g024330 Solanum pennellii HOM05D002933 ORTHO05D009221 8.3e-19 97.8 69 66.7
vmacro07148 Vaccinium macrocarpon HOM05D002933 ORTHO05D009221 8.3e-19 97.8 57 77.2
DCAR_015210 Daucus carota HOM05D002933 ORTHO05D009221 1.4e-18 97.1 150 41.3
PSO206G0047 Papaver somniferum HOM05D002933 ORTHO05D009221 1.4e-18 97.1 69 65.2
PSO339G0478 Papaver somniferum HOM05D002933 ORTHO05D009221 1.4e-18 97.1 69 65.2
Migut.F01519 Erythranthe guttata HOM05D002933 ORTHO05D009221 1.8e-18 96.7 148 40.5
Duzib114G0802 Durio zibethinus HOM05D002933 ORTHO05D009221 4.1e-18 95.5 148 40.5
Haze_17014 Corylus avellana HOM05D002933 ORTHO05D009221 7.0e-18 94.7 154 39.6
FAN03G0743 Fragaria x ananassa HOM05D002933 ORTHO05D009221 7.0e-18 94.7 148 40.5
FAN06G0728 Fragaria x ananassa HOM05D002933 ORTHO05D009221 7.0e-18 94.7 148 40.5
Lj5g0017951 Lotus japonicus HOM05D002933 ORTHO05D009221 7.0e-18 94.7 152 38.2
QL08p058687 Quercus lobata HOM05D002933 ORTHO05D009221 7.0e-18 94.7 152 39.5
Atru.chr12.545 Acer truncatum HOM05D002933 ORTHO05D009221 1.6e-17 93.6 148 40.5
CiPaw.02G180900 Carya illinoinensis HOM05D002933 ORTHO05D009221 1.6e-17 93.6 152 36.8
PGR142G1118 Punica granatum HOM05D002933 ORTHO05D009221 1.6e-17 93.6 184 34.8
SalBow6G6093 Salvia bowleyana HOM05D002933 ORTHO05D009221 1.6e-17 93.6 153 39.2
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 1.6e-17 93.6 148 39.2
Cfa001527 Carpinus fangiana HOM05D002933 ORTHO05D009221 5.9e-17 91.7 154 38.3
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 1.0e-16 90.9 69 65.2
Glyma.20G239700 Glycine max HOM05D002933 ORTHO05D009221 1.3e-16 90.5 152 36.8
Potri.010G210000 Populus trichocarpa HOM05D002933 ORTHO05D009221 1.3e-16 90.5 152 36.8
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 2.3e-16 89.7 153 37.3
FAN06G0750 Fragaria x ananassa HOM05D002933 ORTHO05D009221 2.9e-16 89.4 69 59.4
Ah.16g107480 Amaranthus hybridus HOM05D002933 ORTHO05D009221 3.8e-16 89.0 135 43.0
Sabra10G0162300 Salix brachista HOM05D002933 ORTHO05D009221 5.0e-16 88.6 148 37.2
arahy.Tifrunner.gnm1.ann1.I4CVDG Arachis hypogaea HOM05D002933 ORTHO05D009221 6.6e-16 88.2 149 36.9
arahy.Tifrunner.gnm1.ann1.PIZC5V Arachis hypogaea HOM05D002933 ORTHO05D009221 6.6e-16 88.2 149 36.9
MELO3C025467.2 Cucumis melo HOM05D002933 ORTHO05D009221 6.6e-16 88.2 152 40.1
Ca_11296_v3 Cicer arietinum L. HOM05D002933 ORTHO05D009221 1.1e-15 87.4 148 37.8
Eucgr.G02907 Eucalyptus grandis HOM05D002933 ORTHO05D009221 1.1e-15 87.4 152 36.8
Glyma.10G290700 Glycine max HOM05D002933 ORTHO05D009221 1.5e-15 87.0 69 60.9
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 1.5e-15 87.0 152 36.8
Glyma.20G098500 Glycine max HOM05D002933 ORTHO05D009221 1.9e-15 86.7 69 59.4
Medtr1g115410 Medicago truncatula HOM05D002933 ORTHO05D009221 1.9e-15 86.7 148 36.5
Prupe.2G229200 Prunus persica HOM05D002933 ORTHO05D009221 3.3e-15 85.9 152 37.5
Sed0025549 Sechium edule HOM05D002933 ORTHO05D009221 3.3e-15 85.9 152 38.2
THA.LOC104824260 Tarenaya hassleriana HOM05D002933 ORTHO05D009221 4.3e-15 85.5 150 34.0
AT2G39470 Arabidopsis thaliana HOM05D002933 ORTHO05D009221 7.3e-15 84.7 182 31.9
Manes.10G034800 Manihot esculenta HOM05D002933 ORTHO05D009221 9.5e-15 84.3 151 35.8
unitig_26.g10020 Utricularia gibba HOM05D002933 ORTHO05D009221 9.5e-15 84.3 69 60.9
ClCG09G020180 Citrullus lanatus HOM05D002933 ORTHO05D009221 1.6e-14 83.6 69 58.0
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 1.6e-14 83.6 152 36.2
CsaV3_5G026270 Cucumis sativus L. HOM05D002933 ORTHO05D009221 2.1e-14 83.2 152 38.8
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 2.8e-14 82.8 149 35.6
AL463U10010 Arabidopsis lyrata HOM05D002933 ORTHO05D009221 4.7e-14 82.0 181 31.5
FAN01G2733 Fragaria x ananassa HOM05D002933 ORTHO05D009221 1.0e-13 80.9 124 42.7
AL4G36860 Arabidopsis lyrata HOM05D002933 ORTHO05D009221 1.4e-13 80.5 181 30.9
VMungo0720G1641 Vigna mungo HOM05D002933 ORTHO05D009221 1.8e-13 80.1 69 55.1
Zm00001eb012750 Zea mays HOM05D002933 ORTHO05D009221 1.8e-13 80.1 69 52.2
Lalb_Chr21g0307341 Lupinus albus HOM05D002933 ORTHO05D009221 2.3e-13 79.7 152 32.2
Phvul.007G010700 Phaseolus vulgaris HOM05D002933 ORTHO05D009221 2.3e-13 79.7 69 55.1
BraA05t19656Z Brassica rapa HOM05D002933 ORTHO05D009221 5.2e-13 78.6 188 30.3
AUR62022518 Chenopodium quinoa HOM05D002933 ORTHO05D009221 5.2e-13 78.6 69 53.6
AUR62035952 Chenopodium quinoa HOM05D002933 ORTHO05D009221 5.2e-13 78.6 69 53.6
Carub.0004s2154 Capsella rubella HOM05D002933 ORTHO05D009221 6.8e-13 78.2 68 48.5
Thhalv10017187m.g Eutrema salsugineum HOM05D002933 ORTHO05D009221 8.9e-13 77.8 153 32.7
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 3.4e-12 75.9 148 34.5
BcaB02g09116 Brassica carinata HOM05D002933 ORTHO05D009221 5.7e-12 75.1 149 32.2
BolC4t22428H Brassica oleracea HOM05D002933 ORTHO05D009221 5.7e-12 75.1 68 47.1
CARHR134340 Cardamine hirsuta HOM05D002933 ORTHO05D009221 7.5e-12 74.7 68 45.6
Sp4g21770 Schrenkiella parvula HOM05D002933 ORTHO05D009221 9.8e-12 74.3 68 45.6
FAN10G0024 Fragaria x ananassa HOM05D002933 ORTHO05D009221 1.3e-11 73.9 105 46.7
TWI63G1829 Tripterygium wilfordii HOM05D002933 ORTHO05D009221 1.7e-11 73.6 126 40.5
A05p06910 Brassica napus HOM05D002933 ORTHO05D009221 2.2e-11 73.2 68 45.6
C04p08180 Brassica napus HOM05D002933 ORTHO05D009221 4.9e-11 72.0 68 45.6
arahy.Tifrunner.gnm1.ann1.9UB46P Arachis hypogaea HOM05D002933 ORTHO05D009221 1.1e-10 70.9 52 57.7
arahy.Tifrunner.gnm1.ann1.J6K3RH Arachis hypogaea HOM05D002933 ORTHO05D009221 4.1e-10 68.9 55 58.2
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 9.2e-10 67.8 69 44.9
HanXRQChr05g0154341 Helianthus annuus HOM05D002933 ORTHO05D007742 2.0e-09 66.6 69 46.4
arahy.Tifrunner.gnm1.ann1.WB08RS Arachis hypogaea HOM05D002933 ORTHO05D009221 2.7e-09 66.2 48 58.3
Nitab4.5_0000225g0040 Nicotiana tabacum HOM05D002933 ORTHO05D009221 2.7e-09 66.2 61 59.0
MD01G1121300 Malus domestica HOM05D002933 ORTHO05D007742 3.5e-09 65.9 69 44.9
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.7e-08 63.5 69 43.5
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.7e-08 63.5 69 43.5
unitig_52.g17502 Utricularia gibba HOM05D002933 ORTHO05D007742 1.7e-08 63.5 69 43.5
Prupe.2G229000 Prunus persica HOM05D002933 ORTHO05D007742 2.3e-08 63.2 69 43.5
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 2.3e-08 63.2 69 40.6
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 3.0e-08 62.8 69 37.7
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 3.9e-08 62.4 69 36.2
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 3.9e-08 62.4 69 36.2
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 5.0e-08 62.0 69 40.6
FAN03G0329 Fragaria x ananassa HOM05D002933 ORTHO05D007742 5.0e-08 62.0 69 40.6
PSO384G2709 Papaver somniferum HOM05D002933 ORTHO05D007742 5.0e-08 62.0 69 42.0
RcHm_v2.0_Chr1g0365751 Rosa chinensis HOM05D002933 ORTHO05D007742 5.0e-08 62.0 69 40.6
EL10Ac2g03451 Beta vulgaris HOM05D002933 ORTHO05D009221 6.6e-08 61.6 57 49.1
Lj9A439T48 Lonicera japonica HOM05D002933 ORTHO05D007742 6.6e-08 61.6 69 40.6
Manes.10G038112 Manihot esculenta HOM05D002933 ORTHO05D007742 6.6e-08 61.6 69 39.1
PSO135G0212 Papaver somniferum HOM05D002933 ORTHO05D007742 6.6e-08 61.6 69 42.0
ATR0033G026 Amborella trichopoda HOM05D002933 ORTHO05D007742 8.6e-08 61.2 69 39.1
arahy.Tifrunner.gnm1.ann1.55TXVJ Arachis hypogaea HOM05D002933 ORTHO05D007742 8.6e-08 61.2 69 40.6
arahy.Tifrunner.gnm1.ann1.XEQF22 Arachis hypogaea HOM05D002933 ORTHO05D007742 8.6e-08 61.2 69 40.6
MSTRG.22954 Avicennia marina HOM05D002933 ORTHO05D007742 8.6e-08 61.2 69 39.1
FvH4_7g21370 Fragaria vesca HOM05D002933 ORTHO05D007742 8.6e-08 61.2 69 40.6
FAN01G1038 Fragaria x ananassa HOM05D002933 ORTHO05D007742 8.6e-08 61.2 69 40.6
FAN06G1816 Fragaria x ananassa HOM05D002933 ORTHO05D007742 8.6e-08 61.2 69 40.6
FAN06G3199 Fragaria x ananassa HOM05D002933 ORTHO05D007742 8.6e-08 61.2 69 40.6
FAN10G2797 Fragaria x ananassa HOM05D002933 ORTHO05D007742 8.6e-08 61.2 69 40.6
Gohir.A05G300500 Gossypium hirsutum HOM05D002933 ORTHO05D007742 8.6e-08 61.2 74 37.8
Hma1.2p1_0060F.1_g032910 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 8.6e-08 61.2 69 39.1
Manes.07G111100 Manihot esculenta HOM05D002933 ORTHO05D007742 8.6e-08 61.2 69 39.1
QL08p058666 Quercus lobata HOM05D002933 ORTHO05D007742 8.6e-08 61.2 69 37.7
SalBow5G4018 Salvia bowleyana HOM05D002933 ORTHO05D007742 8.6e-08 61.2 69 39.1
Cfa001530 Carpinus fangiana HOM05D002933 ORTHO05D007742 1.1e-07 60.8 69 39.1
Gohir.D05G300200 Gossypium hirsutum HOM05D002933 ORTHO05D007742 1.1e-07 60.8 69 39.1
Gorai.009G317700 Gossypium raimondii HOM05D002933 ORTHO05D007742 1.1e-07 60.8 69 39.1
Potri.010G210200 Populus trichocarpa HOM05D002933 ORTHO05D007742 1.1e-07 60.8 69 42.0
TAR623G1509 Trochodendron aralioides HOM05D002933 ORTHO05D007742 1.1e-07 60.8 69 40.6
TAR623G1657 Trochodendron aralioides HOM05D002933 ORTHO05D007742 1.1e-07 60.8 69 40.6
HPP92_016520 Vanilla planifolia HOM05D002933 ORTHO05D007742 1.1e-07 60.8 69 40.6
HPP92_027632 Vanilla planifolia HOM05D002933 ORTHO05D007742 1.1e-07 60.8 69 40.6
Duzib114G0859 Durio zibethinus HOM05D002933 ORTHO05D007742 1.5e-07 60.5 69 39.1
ECA246G3602 Erigeron canadensis HOM05D002933 ORTHO05D007742 1.5e-07 60.5 69 40.6
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 1.5e-07 60.5 69 40.6
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 1.9e-07 60.1 69 40.6
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 1.9e-07 60.1 69 40.6
CANSAT56G0382 Cannabis sativa HOM05D002933 ORTHO05D007742 1.9e-07 60.1 69 39.1
Eucgr.G02904 Eucalyptus grandis HOM05D002933 ORTHO05D007742 1.9e-07 60.1 69 39.1
Psat6g169400 Pisum sativum HOM05D002933 ORTHO05D007742 1.9e-07 60.1 69 40.6
Medtr7g023290 Medicago truncatula HOM05D002933 ORTHO05D007742 2.5e-07 59.7 69 39.1
Sc12g0007090 Simmondsia chinensis HOM05D002933 ORTHO05D007742 3.3e-07 59.3 69 39.1
Cc11_g04720 Coffea canephora HOM05D002933 ORTHO05D007742 4.3e-07 58.9 69 39.1
Glyma.18G286500 Glycine max HOM05D002933 ORTHO05D007742 4.3e-07 58.9 69 36.2
Lalb_Chr10g0091861 Lupinus albus HOM05D002933 ORTHO05D007742 4.3e-07 58.9 69 37.7
Os10g0461400 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 4.3e-07 58.9 57 45.6
PGR142G2901 Punica granatum HOM05D002933 ORTHO05D007742 4.3e-07 58.9 69 39.1
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 5.6e-07 58.5 69 34.8
Cpa.g.sc1.346 Carica papaya HOM05D002933 ORTHO05D007742 5.6e-07 58.5 59 42.4
Haze_17012 Corylus avellana HOM05D002933 ORTHO05D007742 5.6e-07 58.5 69 39.1
Lsat_1_v5_gn_5_23660 Lactuca sativa HOM05D002933 ORTHO05D007742 5.6e-07 58.5 69 39.1
Thecc.10G052500 Theobroma cacao HOM05D002933 ORTHO05D007742 7.3e-07 58.2 69 39.1
Nitab4.5_0001723g0030 Nicotiana tabacum HOM05D002933 ORTHO05D007742 9.5e-07 57.8 69 36.2
Nitab4.5_0001797g0060 Nicotiana tabacum HOM05D002933 ORTHO05D007742 9.5e-07 57.8 69 36.2
GSVIVG01016618001 Vitis vinifera HOM05D002933 ORTHO05D007742 9.5e-07 57.8 69 39.1
CiPaw.02G180700 Carya illinoinensis HOM05D002933 ORTHO05D007742 1.2e-06 57.4 69 34.8
BolC3t15007H Brassica oleracea HOM05D002933 ORTHO05D009221 1.6e-06 57.0 51 41.2
Rhsim12G0149400 Rhododendron simsii HOM05D002933 ORTHO05D007742 1.6e-06 57.0 69 39.1
CDE02G3024 Ceratophyllum demersum HOM05D002933 ORTHO05D009221 2.1e-06 56.6 36 66.7
Ca_07202_v3 Cicer arietinum L. HOM05D002933 ORTHO05D007742 2.8e-06 56.2 69 37.7
ClCG09G020230 Citrullus lanatus HOM05D002933 ORTHO05D007742 2.8e-06 56.2 69 34.8
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 2.8e-06 56.2 69 34.8
Aqoxy4G03028 Aquilegia oxysepala HOM05D002933 ORTHO05D007742 3.6e-06 55.8 69 37.7
Oeu057202.1 Olea europaea HOM05D002933 ORTHO05D007742 3.6e-06 55.8 69 36.2
Phvul.008G015100 Phaseolus vulgaris HOM05D002933 ORTHO05D007742 4.7e-06 55.5 69 34.8
Sabra10G0162500 Salix brachista HOM05D002933 ORTHO05D007742 4.7e-06 55.5 68 39.7
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 4.7e-06 55.5 69 36.2
CSS0020461 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 6.2e-06 55.1 69 36.2
CSS0042513 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 6.2e-06 55.1 69 36.2
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 8.0e-06 54.7 69 36.2
Lj1g0025916 Lotus japonicus HOM05D002933 ORTHO05D007742 8.0e-06 54.7 69 33.3
TPR.G15514 Trifolium pratense HOM05D002933 ORTHO05D007742 8.0e-06 54.7 69 33.3


User provided reference genes

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