Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014933 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D021140 4.2e-103 378.6 292 100.0
vmacro07436 Vaccinium macrocarpon HOM05D001558 ORTHO05D005808 1.6e-62 243.8 258 82.6
EL10Ac7g16875 Beta vulgaris HOM05D001558 ORTHO05D005808 5.4e-58 228.8 197 76.6
Lj3A1009T56 Lonicera japonica HOM05D001558 ORTHO05D005808 7.3e-55 218.4 183 81.4
CSS0036487 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D005808 8.1e-54 214.9 184 79.9
AUR62036988 Chenopodium quinoa HOM05D001558 ORTHO05D005808 1.2e-52 211.1 183 79.2
Zm00001eb039370 Zea mays HOM05D001558 ORTHO05D005808 2.6e-52 209.9 186 74.2
Os08g0559300 Oryza sativa ssp. japonica HOM05D001558 ORTHO05D005808 1.1e-50 204.5 182 75.8
SEGI_01931 Sequoiadendron giganteum HOM05D001558 ORTHO05D005808 1.4e-50 204.1 182 76.9
SGA_v2.0_scaffold31G12893 Striga asiatica HOM05D001558 ORTHO05D005808 3.3e-47 193.0 258 60.1
THA.LOC104816601 Tarenaya hassleriana HOM05D001558 ORTHO05D005808 1.2e-46 191.0 186 71.0
HPP92_001970 Vanilla planifolia HOM05D001558 ORTHO05D005808 2.8e-46 189.9 183 71.6
AUR62006225 Chenopodium quinoa HOM05D001558 ORTHO05D005808 4.4e-44 182.6 183 70.5
Rhsim03G0070000 Rhododendron simsii HOM05D001558 ORTHO05D005808 8.4e-43 178.3 278 64.4
CSS0019098 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D005808 3.5e-41 172.9 183 72.7
Glyma.10G075300 Glycine max HOM05D001558 ORTHO05D005808 3.9e-40 169.5 182 73.1
DCAR_019223 Daucus carota HOM05D001558 ORTHO05D021140 9.6e-39 164.9 273 42.1
Haze_19651 Corylus avellana HOM05D001558 ORTHO05D005808 1.6e-38 164.1 257 70.8
THA.LOC104809967 Tarenaya hassleriana HOM05D001558 ORTHO05D005808 2.8e-38 163.3 186 66.7
Nitab4.5_0000573g0160 Nicotiana tabacum HOM05D001558 ORTHO05D005808 2.4e-37 160.2 258 70.5
Phvul.001G192300 Phaseolus vulgaris HOM05D001558 ORTHO05D005808 2.0e-36 157.1 182 68.7
CARHR086090 Cardamine hirsuta HOM05D001558 ORTHO05D005808 2.6e-36 156.8 186 67.7
CiPaw.10G012400 Carya illinoinensis HOM05D001558 ORTHO05D005808 3.4e-36 156.4 183 69.4
Ciclev10011021m.g Citrus clementina HOM05D001558 ORTHO05D005808 1.3e-35 154.5 183 66.7
Nn6g34815 Nelumbo nucifera HOM05D001558 ORTHO05D005808 8.4e-35 151.8 186 66.1
Oeu007200.1 Olea europaea HOM05D001558 ORTHO05D005808 1.1e-34 151.4 183 66.7
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 1.4e-34 151.0 182 67.0
C03p45000 Brassica napus HOM05D001558 ORTHO05D005808 9.3e-34 148.3 190 50.5
unitig_744.g24703 Utricularia gibba HOM05D001558 ORTHO05D005808 2.1e-33 147.1 259 51.7
Phvul.007G153100 Phaseolus vulgaris HOM05D001558 ORTHO05D005808 2.7e-33 146.7 183 68.9
CiPaw.09G017100 Carya illinoinensis HOM05D001558 ORTHO05D005808 6.0e-33 145.6 183 68.3
Medtr1g059610 Medicago truncatula HOM05D001558 ORTHO05D005808 7.9e-33 145.2 183 69.4
MD12G1030800 Malus domestica HOM05D001558 ORTHO05D005808 1.3e-32 144.4 182 65.9
TAR623G1089 Trochodendron aralioides HOM05D001558 ORTHO05D005808 2.3e-32 143.7 184 70.7
Sabra16G0078200 Salix brachista HOM05D001558 ORTHO05D005808 5.1e-32 142.5 297 54.2
Glyma.02G201300 Glycine max HOM05D001558 ORTHO05D005808 6.7e-32 142.1 183 67.2
TAR369G0994 Trochodendron aralioides HOM05D001558 ORTHO05D005808 8.7e-32 141.7 184 70.1
Peaxi162Scf00069g00320 Petunia axillaris HOM05D001558 ORTHO05D005808 1.1e-31 141.4 183 63.4
Aa31LG3G4940 Aethionema arabicum HOM05D001558 ORTHO05D005808 1.5e-31 141.0 186 64.0
MD14G1031300 Malus domestica HOM05D001558 ORTHO05D005808 1.5e-31 141.0 181 65.2
Duzib093G1606 Durio zibethinus HOM05D001558 ORTHO05D005808 1.9e-31 140.6 183 63.9
Sabra06G0160700 Salix brachista HOM05D001558 ORTHO05D005808 1.9e-31 140.6 266 65.8
HanXRQChr06g0176131 Helianthus annuus HOM05D001558 ORTHO05D005808 2.5e-31 140.2 183 63.4
Ca_24224_v3 Cicer arietinum L. HOM05D001558 ORTHO05D005808 3.3e-31 139.8 183 64.5
MSTRG.19276 Avicennia marina HOM05D001558 ORTHO05D005808 1.6e-30 137.5 182 62.1
Lj5g0025907 Lotus japonicus HOM05D001558 ORTHO05D005808 1.6e-30 137.5 183 66.1
DCAR_012896 Daucus carota HOM05D001558 ORTHO05D005808 2.8e-30 136.7 181 68.5
HanXRQChr05g0133061 Helianthus annuus HOM05D001558 ORTHO05D005808 2.8e-30 136.7 182 62.6
SGA_v2.0_scaffold13G06695 Striga asiatica HOM05D001558 ORTHO05D005808 2.8e-30 136.7 183 62.3
Lalb_Chr25g0288211 Lupinus albus HOM05D001558 ORTHO05D005808 3.7e-30 136.3 202 58.4
ATR0820G233 Amborella trichopoda HOM05D001558 ORTHO05D005808 4.8e-30 136.0 183 56.3
Glyma.03G198100 Glycine max HOM05D001558 ORTHO05D005808 8.1e-30 135.2 182 63.2
Glyma.19G196000 Glycine max HOM05D001558 ORTHO05D005808 8.1e-30 135.2 182 63.2
TPR.G14787 Trifolium pratense HOM05D001558 ORTHO05D005808 8.1e-30 135.2 182 68.1
A03p37150 Brassica napus HOM05D001558 ORTHO05D005808 1.8e-29 134.0 186 61.8
BraA03t12875Z Brassica rapa HOM05D001558 ORTHO05D005808 1.8e-29 134.0 186 61.8
Lalb_Chr20g0111601 Lupinus albus HOM05D001558 ORTHO05D005808 1.8e-29 134.0 202 59.4
Aqoxy4G02724 Aquilegia oxysepala HOM05D001558 ORTHO05D005808 4.0e-29 132.9 186 64.0
Migut.J01002 Erythranthe guttata HOM05D001558 ORTHO05D005808 5.3e-29 132.5 125 79.2
arahy.Tifrunner.gnm1.ann1.VDQ48T Arachis hypogaea HOM05D001558 ORTHO05D005808 6.9e-29 132.1 183 67.2
arahy.Tifrunner.gnm1.ann1.XHST8G Arachis hypogaea HOM05D001558 ORTHO05D005808 6.9e-29 132.1 183 67.2
Actinidia04015 Actinidia chinensis HOM05D001558 ORTHO05D005808 9.0e-29 131.7 182 60.4
BcaB04g18647 Brassica carinata HOM05D001558 ORTHO05D005808 1.2e-28 131.3 186 61.8
Psat6g080760 Pisum sativum HOM05D001558 ORTHO05D005808 1.2e-28 131.3 183 66.1
HPP92_001984 Vanilla planifolia HOM05D001558 ORTHO05D005808 1.2e-28 131.3 183 65.0
Dinv31718 Davidia involucrata HOM05D001558 ORTHO05D005808 2.0e-28 130.6 182 62.1
Cc06_g06160 Coffea canephora HOM05D001558 ORTHO05D005808 2.6e-28 130.2 183 61.2
Thecc.05G095300 Theobroma cacao HOM05D001558 ORTHO05D005808 3.4e-28 129.8 183 61.2
BcaB06g25610 Brassica carinata HOM05D001558 ORTHO05D005808 4.5e-28 129.4 186 61.3
BcaC05g29357 Brassica carinata HOM05D001558 ORTHO05D005808 4.5e-28 129.4 186 61.3
A05p37790 Brassica napus HOM05D001558 ORTHO05D005808 4.5e-28 129.4 186 61.3
C05p56410 Brassica napus HOM05D001558 ORTHO05D005808 4.5e-28 129.4 186 61.3
BolC5t34308H Brassica oleracea HOM05D001558 ORTHO05D005808 4.5e-28 129.4 186 61.3
BraA05t22574Z Brassica rapa HOM05D001558 ORTHO05D005808 4.5e-28 129.4 186 61.3
Sp3g09780 Schrenkiella parvula HOM05D001558 ORTHO05D005808 4.5e-28 129.4 186 61.3
BcaC01g04107 Brassica carinata HOM05D001558 ORTHO05D005808 5.8e-28 129.0 186 60.8
BolC3t16760H Brassica oleracea HOM05D001558 ORTHO05D005808 5.8e-28 129.0 186 60.8
Thhalv10020017m.g Eutrema salsugineum HOM05D001558 ORTHO05D005808 5.8e-28 129.0 186 61.3
Oeu047838.2 Olea europaea HOM05D001558 ORTHO05D005808 7.6e-28 128.6 258 62.8
AL3G23090 Arabidopsis lyrata HOM05D001558 ORTHO05D005808 9.9e-28 128.3 186 61.3
AT3G11540 Arabidopsis thaliana HOM05D001558 ORTHO05D005808 9.9e-28 128.3 186 61.3
Carub.0003s1086 Capsella rubella HOM05D001558 ORTHO05D005808 9.9e-28 128.3 186 61.3
TWI77G0440 Tripterygium wilfordii HOM05D001558 ORTHO05D005808 9.9e-28 128.3 182 61.5
Eucgr.K02568 Eucalyptus grandis HOM05D001558 ORTHO05D005808 2.9e-27 126.7 183 60.1
PGR142G1086 Punica granatum HOM05D001558 ORTHO05D005808 2.9e-27 126.7 125 82.4
Cpa.g.sc104.95 Carica papaya HOM05D001558 ORTHO05D005808 4.9e-27 125.9 119 82.4
Atru.chr8.1448 Acer truncatum HOM05D001558 ORTHO05D005808 8.4e-27 125.2 118 82.2
Dinv21169 Davidia involucrata HOM05D001558 ORTHO05D005808 1.1e-26 124.8 119 79.8
Actinidia05402 Actinidia chinensis HOM05D001558 ORTHO05D005808 1.4e-26 124.4 118 82.2
CDE11G0510 Ceratophyllum demersum HOM05D001558 ORTHO05D005808 1.4e-26 124.4 182 50.0
COL.COLO4_29672 Corchorus olitorius HOM05D001558 ORTHO05D005808 1.4e-26 124.4 119 81.5
Gohir.D01G194100 Gossypium hirsutum HOM05D001558 ORTHO05D005808 1.4e-26 124.4 119 81.5
Gorai.002G238200 Gossypium raimondii HOM05D001558 ORTHO05D005808 1.4e-26 124.4 119 81.5
GSVIVG01033891001 Vitis vinifera HOM05D001558 ORTHO05D005808 1.4e-26 124.4 119 84.0
TWI74G0547 Tripterygium wilfordii HOM05D001558 ORTHO05D005808 1.9e-26 124.0 120 80.0
Gohir.A01G204700 Gossypium hirsutum HOM05D001558 ORTHO05D005808 3.2e-26 123.2 119 83.2
PSO384G0942 Papaver somniferum HOM05D001558 ORTHO05D005808 7.1e-26 122.1 202 53.5
SHI12376 Sapria himalayana HOM05D001558 ORTHO05D005808 7.1e-26 122.1 183 63.4
Prupe.7G101600 Prunus persica HOM05D001558 ORTHO05D005808 9.3e-26 121.7 119 80.7
Potri.006G208900 Populus trichocarpa HOM05D001558 ORTHO05D005808 2.1e-25 120.6 118 80.5
PSO339G4154 Papaver somniferum HOM05D001558 ORTHO05D005808 2.7e-25 120.2 202 56.4
Lsat_1_v5_gn_8_74960 Lactuca sativa HOM05D001558 ORTHO05D005808 6.0e-25 119.0 182 59.3
Ah.02g111800 Amaranthus hybridus HOM05D001558 ORTHO05D005808 7.9e-25 118.6 182 58.8
Potri.016G075700 Populus trichocarpa HOM05D001558 ORTHO05D005808 1.3e-24 117.9 119 79.0
Duzib106G1253 Durio zibethinus HOM05D001558 ORTHO05D005808 1.8e-24 117.5 206 59.2
Psat0ss5705g0120 Pisum sativum HOM05D001558 ORTHO05D021140 3.9e-24 116.3 160 43.1
SMO334G0063 Selaginella moellendorffii HOM05D001558 ORTHO05D005808 3.9e-24 116.3 117 86.3
FAN14G2159 Fragaria x ananassa HOM05D001558 ORTHO05D005808 5.1e-24 115.9 291 47.4
Pp3c2_30810 Physcomitrium patens HOM05D001558 ORTHO05D005808 8.7e-24 115.2 117 86.3
Mapoly0020s0107 Marchantia polymorpha HOM05D001558 ORTHO05D005808 1.6e-22 110.9 117 75.2
PGSC0003DMG400008939 Solanum tuberosum HOM05D001558 ORTHO05D005808 2.4e-21 107.1 183 56.8
Solyc09g010180.3 Solanum lycopersicum HOM05D001558 ORTHO05D005808 3.1e-21 106.7 183 56.8
ECA236G3012 Erigeron canadensis HOM05D001558 ORTHO05D005808 6.9e-21 105.5 183 53.6
MELO3C024563.2 Cucumis melo HOM05D001558 ORTHO05D005808 9.0e-21 105.1 182 54.4
CsaV3_6G040850 Cucumis sativus L. HOM05D001558 ORTHO05D005808 9.0e-21 105.1 182 54.4
Sopen09g004920 Solanum pennellii HOM05D001558 ORTHO05D005808 9.0e-21 105.1 183 56.3
Sed0010659 Sechium edule HOM05D001558 ORTHO05D005808 1.2e-20 104.8 182 56.0
Manes.08G028400 Manihot esculenta HOM05D001558 ORTHO05D005808 2.0e-20 104.0 183 55.7
Manes.09G052300 Manihot esculenta HOM05D001558 ORTHO05D005808 2.6e-20 103.6 118 75.4
CAN.G397.87 Capsicum annuum HOM05D001558 ORTHO05D005808 4.5e-20 102.8 183 55.7
CANSAT64G1174 Cannabis sativa HOM05D001558 ORTHO05D005808 2.2e-19 100.5 118 80.5
MBI05_g03435_MAGBIO Magnolia biondii HOM05D001558 ORTHO05D005808 6.5e-19 99.0 183 53.6
Psat0s1824g0040 Pisum sativum HOM05D001558 ORTHO05D021140 4.6e-17 92.8 132 43.2
FAN09G3352 Fragaria x ananassa HOM05D001558 ORTHO05D005808 4.3e-15 86.3 257 43.2
DCAR_008674 Daucus carota HOM05D001558 ORTHO05D005808 7.4e-15 85.5 43 86.0
MBI05_g32169_MAGBIO Magnolia biondii HOM05D001558 ORTHO05D005808 3.7e-14 83.2 67 67.2
FAN05G0475 Fragaria x ananassa HOM05D001558 ORTHO05D005808 4.8e-14 82.8 258 43.4
FAN05G1606 Fragaria x ananassa HOM05D001558 ORTHO05D005808 4.8e-14 82.8 258 43.4
FvH4_6g19470 Fragaria vesca HOM05D001558 ORTHO05D005808 6.3e-14 82.4 182 51.6
FAN02G4309 Fragaria x ananassa HOM05D001558 ORTHO05D005808 1.1e-13 81.6 258 42.2
RcHm_v2.0_Chr3g0474801 Rosa chinensis HOM05D001558 ORTHO05D005808 1.4e-13 81.3 119 67.2
Gohir.A11G318700 Gossypium hirsutum HOM05D001558 ORTHO05D005808 1.7e-11 74.3 183 49.7
Gohir.D11G337900 Gossypium hirsutum HOM05D001558 ORTHO05D005808 1.7e-11 74.3 183 50.3
Gorai.007G367900 Gossypium raimondii HOM05D001558 ORTHO05D005808 1.7e-11 74.3 183 50.3
AagrBONN_evm.TU.Sc2ySwM_228.5709 Anthoceros agrestis HOM05D001558 ORTHO05D005808 2.5e-10 70.5 117 70.9
Sc20g0006410 Simmondsia chinensis HOM05D001558 ORTHO05D005808 2.5e-10 70.5 183 49.2
QL07p038153 Quercus lobata HOM05D001558 ORTHO05D005808 1.0e-08 65.1 183 44.8
vmacro16017 Vaccinium macrocarpon HOM05D001558 ORTHO05D426453 1.0e-08 65.1 38 73.7
Actinidia03913 Actinidia chinensis HOM05D001558 ORTHO05D030947 3.3e-07 60.1 78 50.0
CSS0015510 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 4.3e-07 59.7 26 96.2


User provided reference genes

Program Settings