Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014897 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D009884 3.7e-78 295.0 177 100.0
CSS0044959 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 3.0e-67 258.8 165 96.4
Actinidia23995 Actinidia chinensis HOM05D000343 ORTHO05D002777 2.5e-34 149.4 163 65.6
Actinidia00268 Actinidia chinensis HOM05D000343 ORTHO05D002777 9.0e-32 141.0 164 67.1
Hma1.2p1_0704F.1_g206650 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 3.0e-27 125.9 161 62.1
vmacro01824 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 3.0e-27 125.9 168 62.5
Rhsim11G0136600 Rhododendron simsii HOM05D000343 ORTHO05D002777 5.6e-26 121.7 174 60.9
Nn5g30120 Nelumbo nucifera HOM05D000343 ORTHO05D002777 2.1e-20 103.2 172 48.8
Cc02_g21540 Coffea canephora HOM05D000343 ORTHO05D009884 3.5e-20 102.4 171 56.7
TAR376G1172 Trochodendron aralioides HOM05D000343 ORTHO05D009884 6.7e-19 98.2 169 43.8
TAR628G1020 Trochodendron aralioides HOM05D000343 ORTHO05D002777 8.7e-19 97.8 172 51.2
MD05G1044800 Malus domestica HOM05D000343 ORTHO05D009884 1.9e-18 96.7 159 55.3
Nn1g05348 Nelumbo nucifera HOM05D000343 ORTHO05D009884 2.5e-18 96.3 171 52.6
MD10G1051800 Malus domestica HOM05D000343 ORTHO05D009884 7.4e-18 94.7 163 54.6
Oeu000247.4 Olea europaea HOM05D000343 ORTHO05D002777 3.1e-16 89.4 165 49.7
Sopen01g047700 Solanum pennellii HOM05D000343 ORTHO05D009884 4.1e-16 89.0 171 50.9
QL11p020880 Quercus lobata HOM05D000343 ORTHO05D009884 5.3e-16 88.6 165 54.5
Sabra03G0015100 Salix brachista HOM05D000343 ORTHO05D009884 5.3e-16 88.6 164 52.4
RcHm_v2.0_Chr6g0271811 Rosa chinensis HOM05D000343 ORTHO05D009884 6.9e-16 88.2 162 53.1
CiPaw.06G153500 Carya illinoinensis HOM05D000343 ORTHO05D002777 1.5e-15 87.0 166 51.8
Hund06383 Selenicereus undatus HOM05D000343 ORTHO05D009884 1.5e-15 87.0 170 47.1
Prupe.8G060400 Prunus persica HOM05D000343 ORTHO05D002777 2.0e-15 86.7 160 54.4
CiPaw.05G035500 Carya illinoinensis HOM05D000343 ORTHO05D009884 2.6e-15 86.3 91 65.9
Potri.003G024000 Populus trichocarpa HOM05D000343 ORTHO05D002777 2.6e-15 86.3 167 52.7
MBI02_g08720_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D002777 5.8e-15 85.1 170 50.6
Nitab4.5_0002576g0010 Nicotiana tabacum HOM05D000343 ORTHO05D002777 7.6e-15 84.7 171 49.1
Solyc01g105160.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 1.0e-14 84.3 171 49.7
FAN20G2112 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.3e-14 84.0 167 50.9
FvH4_2g11930 Fragaria vesca HOM05D000343 ORTHO05D002777 1.7e-14 83.6 167 50.3
FAN24G2206 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.7e-14 83.6 167 50.3
PGSC0003DMG400012559 Solanum tuberosum HOM05D000343 ORTHO05D009884 1.7e-14 83.6 171 48.0
TWI59G0918 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 2.9e-14 82.8 160 48.8
Duzib132G0085 Durio zibethinus HOM05D000343 ORTHO05D002777 3.8e-14 82.4 164 45.7
Thecc.02G138700 Theobroma cacao HOM05D000343 ORTHO05D002777 5.0e-14 82.0 164 46.3
DCAR_001785 Daucus carota HOM05D000343 ORTHO05D009884 6.5e-14 81.6 160 52.5
Hund00062 Selenicereus undatus HOM05D000343 ORTHO05D002777 6.5e-14 81.6 170 48.8
Cfa005601 Carpinus fangiana HOM05D000343 ORTHO05D002777 8.4e-14 81.3 102 68.6
Aqoxy6G00797 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 1.1e-13 80.9 173 48.6
Manes.06G012600 Manihot esculenta HOM05D000343 ORTHO05D002777 1.1e-13 80.9 49 81.6
SalBow5G0636 Salvia bowleyana HOM05D000343 ORTHO05D009884 1.4e-13 80.5 167 44.9
SalBow5G2302 Salvia bowleyana HOM05D000343 ORTHO05D009884 1.4e-13 80.5 167 44.9
Sed0012395 Sechium edule HOM05D000343 ORTHO05D002777 1.9e-13 80.1 166 50.6
Atru.chr6.1136 Acer truncatum HOM05D000343 ORTHO05D002777 7.2e-13 78.2 159 50.9
ECA240G1089 Erigeron canadensis HOM05D000343 ORTHO05D002777 7.2e-13 78.2 124 57.3
FAN15G3294 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.2e-12 77.4 167 47.3
Medtr4g094232 Medicago truncatula HOM05D000343 ORTHO05D002777 1.2e-12 77.4 159 49.7
Ca_18353_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 1.6e-12 77.0 171 50.3
ClCG10G009250 Citrullus lanatus HOM05D000343 ORTHO05D002777 2.7e-12 76.3 103 61.2
Migut.B00610 Erythranthe guttata HOM05D000343 ORTHO05D002777 4.6e-12 75.5 167 47.9
THA.LOC104804410 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 6.1e-12 75.1 163 47.9
AL7G18020 Arabidopsis lyrata HOM05D000343 ORTHO05D009884 7.9e-12 74.7 159 48.4
Glyma.08G072400 Glycine max HOM05D000343 ORTHO05D002777 1.0e-11 74.3 117 55.6
AT4G33520 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 1.3e-11 73.9 159 50.3
Aa31sc280G30 Aethionema arabicum HOM05D000343 ORTHO05D002777 3.9e-11 72.4 164 47.6
C01p05150 Brassica napus HOM05D000343 ORTHO05D002777 3.9e-11 72.4 165 52.7
Gohir.A03G173900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 3.9e-11 72.4 113 57.5
SGA_v2.0_scaffold14G07121 Striga asiatica HOM05D000343 ORTHO05D002777 3.9e-11 72.4 163 42.3
TPR.G10457 Trifolium pratense HOM05D000343 ORTHO05D002777 3.9e-11 72.4 173 49.1
BolC1t00495H Brassica oleracea HOM05D000343 ORTHO05D002777 5.1e-11 72.0 166 53.0
Gohir.D02G197000 Gossypium hirsutum HOM05D000343 ORTHO05D009884 5.1e-11 72.0 111 55.9
Gorai.005G220100 Gossypium raimondii HOM05D000343 ORTHO05D009884 5.1e-11 72.0 111 55.9
COL.COLO4_24941 Corchorus olitorius HOM05D000343 ORTHO05D009884 1.1e-10 70.9 168 48.8
Potri.001G205400 Populus trichocarpa HOM05D000343 ORTHO05D002777 1.1e-10 70.9 173 47.4
Duzib248G1573 Durio zibethinus HOM05D000343 ORTHO05D009884 1.5e-10 70.5 165 44.8
BraA01t00457Z Brassica rapa HOM05D000343 ORTHO05D002777 1.9e-10 70.1 166 50.6
CAN.G523.72 Capsicum annuum HOM05D000343 ORTHO05D002777 1.9e-10 70.1 173 45.7
MELO3C019011.2 Cucumis melo HOM05D000343 ORTHO05D002777 2.5e-10 69.7 102 55.9
Lsat_1_v5_gn_9_117160 Lactuca sativa HOM05D000343 ORTHO05D002777 2.5e-10 69.7 169 49.7
Lalb_Chr10g0097841 Lupinus albus HOM05D000343 ORTHO05D002777 2.5e-10 69.7 155 46.5
PSO541G1663 Papaver somniferum HOM05D000343 ORTHO05D002777 2.5e-10 69.7 88 67.0
Eucgr.G00666 Eucalyptus grandis HOM05D029851 ORTHO05D029320 3.3e-10 69.3 122 53.3
Eucgr.L00174 Eucalyptus grandis HOM05D029851 ORTHO05D029320 3.3e-10 69.3 122 53.3
CsaV3_4G009440 Cucumis sativus L. HOM05D000343 ORTHO05D002777 4.3e-10 68.9 103 56.3
Oeu036419.1 Olea europaea HOM05D000343 ORTHO05D009884 4.3e-10 68.9 164 36.0
VMungo0251G0418 Vigna mungo HOM05D000343 ORTHO05D009884 4.3e-10 68.9 156 48.1
Psat7g098240 Pisum sativum HOM05D000343 ORTHO05D009884 5.7e-10 68.6 157 47.8
Sc22g0003160 Simmondsia chinensis HOM05D000343 ORTHO05D002777 5.7e-10 68.6 46 73.9
A01p04740 Brassica napus HOM05D000343 ORTHO05D002777 7.4e-10 68.2 164 49.4
HanXRQChr03g0066901 Helianthus annuus HOM05D000343 ORTHO05D002777 9.7e-10 67.8 154 46.8
Lj4g0019087 Lotus japonicus HOM05D000343 ORTHO05D002777 9.7e-10 67.8 118 58.5
CARHR241620 Cardamine hirsuta HOM05D000343 ORTHO05D009884 1.3e-09 67.4 163 49.1
Carub.0007s0694 Capsella rubella HOM05D000343 ORTHO05D009884 2.2e-09 66.6 159 50.9
PSO781G0273 Papaver somniferum HOM05D000343 ORTHO05D002777 2.2e-09 66.6 168 41.1
Eucgr.L00180 Eucalyptus grandis HOM05D029851 ORTHO05D029320 2.8e-09 66.2 56 62.5
Phvul.002G208800 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 2.8e-09 66.2 156 46.2
Sp7g31260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 2.8e-09 66.2 157 51.0
MSTRG.16584 Avicennia marina HOM05D000343 ORTHO05D009884 4.8e-09 65.5 46 71.7
Eucgr.G00769 Eucalyptus grandis HOM05D000343 ORTHO05D002777 4.8e-09 65.5 174 44.8
CDE12G0847 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 8.2e-09 64.7 175 33.1
PGR042G3206 Punica granatum HOM05D000343 ORTHO05D002777 8.2e-09 64.7 175 46.3
arahy.Tifrunner.gnm1.ann1.8T0CRQ Arachis hypogaea HOM05D000343 ORTHO05D002777 1.1e-08 64.3 165 46.1
arahy.Tifrunner.gnm1.ann1.KT5IG2 Arachis hypogaea HOM05D000343 ORTHO05D002777 1.1e-08 64.3 165 46.1
Ciclev10030175m.g Citrus clementina HOM05D000343 ORTHO05D009884 1.1e-08 64.3 36 86.1
Glyma.05G117300 Glycine max HOM05D000343 ORTHO05D009884 1.1e-08 64.3 150 44.0
Cpa.g.sc42.57 Carica papaya HOM05D000343 ORTHO05D009884 1.4e-08 63.9 173 41.0
Eucgr.G00674 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.8e-08 63.5 51 60.8
GSVIVG01038744001 Vitis vinifera HOM05D000343 ORTHO05D009884 1.8e-08 63.5 157 50.3
Lsat_1_v5_gn_7_80921 Lactuca sativa HOM05D000343 ORTHO05D009884 3.1e-08 62.8 50 62.0
Lalb_Chr04g0256521 Lupinus albus HOM05D000343 ORTHO05D009884 4.1e-08 62.4 173 46.2
BcaC09g52169 Brassica carinata HOM05D000343 ORTHO05D002777 6.9e-08 61.6 162 46.3
Gohir.A04G113600 Gossypium hirsutum HOM05D000343 ORTHO05D009884 6.9e-08 61.6 46 67.4
Oeu007963.1 Olea europaea HOM05D000343 ORTHO05D009884 9.0e-08 61.2 167 41.9
Gorai.012G142100 Gossypium raimondii HOM05D000343 ORTHO05D009884 2.0e-07 60.1 33 84.8
A08p17580 Brassica napus HOM05D000343 ORTHO05D009884 2.6e-07 59.7 93 55.9
BraA08t33711Z Brassica rapa HOM05D000343 ORTHO05D009884 2.6e-07 59.7 93 55.9
AUR62010134 Chenopodium quinoa HOM05D000343 ORTHO05D002777 2.6e-07 59.7 164 45.1
HPP92_019306 Vanilla planifolia HOM05D000343 ORTHO05D009884 2.6e-07 59.7 45 64.4
Gohir.D04G154900 Gossypium hirsutum HOM05D000343 ORTHO05D009884 5.9e-07 58.5 130 46.2
AUR62013126 Chenopodium quinoa HOM05D000343 ORTHO05D002777 7.7e-07 58.2 164 44.5
SMO011G0027 Selaginella moellendorffii HOM05D000343 ORTHO05D002777 7.7e-07 58.2 41 78.0
Sed0024706 Sechium edule HOM05D000343 ORTHO05D009884 1.7e-06 57.0 52 57.7
unitig_749.g14153 Utricularia gibba HOM05D000343 ORTHO05D009884 3.8e-06 55.8 52 55.8
Pp3c22_10860 Physcomitrium patens HOM05D000343 ORTHO05D002777 5.0e-06 55.5 51 56.9
Ah.01g022360 Amaranthus hybridus HOM05D000343 ORTHO05D002777 6.5e-06 55.1 168 42.9
EL10Ac9g21477 Beta vulgaris HOM05D000343 ORTHO05D002777 6.5e-06 55.1 159 41.5
HPP92_002330 Vanilla planifolia HOM05D000343 ORTHO05D002777 6.5e-06 55.1 31 80.6
BcaC01g00987 Brassica carinata HOM05D000343 ORTHO05D009884 8.5e-06 54.7 93 58.1
C03p86570 Brassica napus HOM05D000343 ORTHO05D009884 8.5e-06 54.7 93 58.1
BolC3t20951H Brassica oleracea HOM05D000343 ORTHO05D009884 8.5e-06 54.7 93 58.1
HanXRQChr13g0420711 Helianthus annuus HOM05D000343 ORTHO05D009884 8.5e-06 54.7 48 60.4


User provided reference genes

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