Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 1.4e-116 422.9 202 100.0
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.5e-99 366.3 202 87.6
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 1.3e-98 363.2 202 86.6
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 2.8e-90 335.5 202 79.2
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 6.3e-90 334.3 207 77.8
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 1.1e-89 333.6 202 80.2
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 1.4e-89 333.2 202 79.2
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.4e-89 332.4 202 78.7
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 2.4e-89 332.4 202 80.2
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 3.1e-89 332.0 202 79.7
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.1e-89 331.6 200 79.0
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 7.0e-89 330.9 202 79.2
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 9.1e-89 330.5 201 79.1
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 1.2e-88 330.1 205 77.1
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.7e-88 328.9 200 78.0
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 7.7e-88 327.4 194 81.4
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 7.7e-88 327.4 194 81.4
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 1.0e-87 327.0 195 79.0
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.0e-87 327.0 202 79.2
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 1.3e-87 326.6 202 77.2
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 1.3e-87 326.6 205 78.0
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 2.2e-87 325.9 202 76.7
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 1.9e-86 322.8 202 76.7
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 1.9e-86 322.8 198 78.3
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 3.2e-86 322.0 202 76.2
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 3.2e-86 322.0 203 75.4
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 3.2e-86 322.0 202 73.8
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 7.2e-86 320.9 200 77.5
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 7.2e-86 320.9 202 76.7
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 9.4e-86 320.5 205 73.2
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 1.2e-85 320.1 194 78.9
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 1.2e-85 320.1 222 72.1
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 1.2e-85 320.1 202 76.2
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 2.1e-85 319.3 204 73.0
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.1e-85 319.3 202 75.2
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.7e-85 318.9 197 77.7
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 6.1e-85 317.8 200 77.0
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.8e-84 316.2 202 74.8
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 2.3e-84 315.8 203 74.9
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.3e-84 315.8 202 74.3
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 6.8e-84 314.3 200 73.5
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 1.3e-82 310.1 202 69.8
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.3e-82 310.1 274 60.9
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 1.7e-82 309.7 205 70.7
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 1.7e-82 309.7 203 73.4
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 1.1e-81 307.0 202 73.3
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.4e-81 305.8 202 72.3
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 2.4e-81 305.8 198 70.7
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 4.1e-81 305.1 201 73.1
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 5.4e-81 304.7 202 71.8
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 7.0e-81 304.3 202 73.3
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 1.2e-80 303.5 203 74.9
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 1.2e-80 303.5 193 79.3
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 3.5e-80 302.0 202 71.3
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 7.7e-80 300.8 190 71.6
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 7.7e-80 300.8 210 72.4
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 7.7e-80 300.8 186 77.4
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 1.0e-79 300.4 192 73.4
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 1.0e-79 300.4 207 72.5
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 1.0e-79 300.4 194 72.7
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 1.3e-79 300.1 210 71.9
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 2.3e-79 299.3 202 70.3
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 2.3e-79 299.3 209 70.8
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 2.9e-79 298.9 202 70.3
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 2.9e-79 298.9 202 70.8
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.8e-79 298.5 202 71.3
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 3.8e-79 298.5 196 73.5
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 2.5e-78 295.8 195 69.7
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 3.3e-78 295.4 189 76.2
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 4.2e-78 295.0 198 67.7
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 4.7e-77 291.6 202 69.3
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 1.8e-76 289.7 203 69.0
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 3.0e-76 288.9 201 71.6
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 6.8e-76 287.7 196 70.4
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 8.9e-76 287.3 178 77.5
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 8.9e-76 287.3 209 69.4
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 1.5e-75 286.6 207 65.2
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 2.0e-75 286.2 197 69.0
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 2.2e-74 282.7 205 68.3
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 2.8e-74 282.3 190 68.4
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 3.7e-74 282.0 203 66.5
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 1.1e-73 280.4 202 66.3
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 2.4e-73 279.3 275 53.8
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 5.4e-73 278.1 195 65.1
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 5.4e-73 278.1 195 65.1
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 4.5e-72 275.0 205 64.4
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 7.8e-72 274.2 200 65.0
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 7.8e-72 274.2 205 64.4
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 7.8e-72 274.2 191 66.0
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 2.9e-71 272.3 204 63.7
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 2.9e-71 272.3 213 65.7
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 5.0e-71 271.6 148 85.8
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 1.5e-70 270.0 194 67.5
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 1.6e-69 266.5 197 64.0
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 2.1e-69 266.2 199 63.3
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 4.7e-69 265.0 186 66.1
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 4.7e-69 265.0 186 66.1
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 1.0e-68 263.8 186 66.1
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 7.5e-67 257.7 188 65.4
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 7.5e-67 257.7 190 63.7
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 7.5e-67 257.7 190 63.7
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 9.8e-67 257.3 188 63.8
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 1.3e-66 256.9 190 63.7
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 1.7e-66 256.5 183 66.7
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 3.7e-66 255.4 209 63.2
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 8.3e-66 254.2 289 47.4
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 1.4e-65 253.4 188 61.7
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 4.1e-65 251.9 182 64.3
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 5.4e-65 251.5 187 62.0
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.6e-64 250.0 174 68.4
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 1.7e-63 246.5 183 63.9
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 1.1e-62 243.8 182 63.2
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.1e-62 243.8 202 59.9
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 4.3e-62 241.9 165 73.9
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 7.3e-62 241.1 200 60.5
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.2e-61 240.4 184 64.7
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 3.6e-61 238.8 182 62.1
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 3.6e-61 238.8 182 62.1
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 3.6e-61 238.8 203 61.1
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 4.0e-60 235.3 202 56.9
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 5.2e-60 235.0 159 70.4
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 1.4e-57 226.9 145 66.9
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 1.9e-57 226.5 189 56.1
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 2.4e-57 226.1 140 75.7
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 4.1e-57 225.3 203 55.2
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 1.3e-55 220.3 155 71.0
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 2.5e-54 216.1 154 68.2
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 1.6e-53 213.4 200 54.5
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 2.1e-53 213.0 196 54.1
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 4.7e-53 211.8 201 47.8
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 8.1e-53 211.1 186 59.1
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 1.1e-52 210.7 183 52.5
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 5.2e-52 208.4 191 56.0
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.6e-51 206.1 187 53.5
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 3.4e-51 205.7 190 57.9
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 2.2e-50 203.0 141 68.8
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 2.2e-50 203.0 170 59.4
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 2.9e-50 202.6 154 61.0
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 5.4e-49 198.4 180 55.0
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 7.1e-49 198.0 135 68.9
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 7.3e-46 188.0 201 45.3
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 7.3e-46 188.0 182 47.8
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 2.8e-45 186.0 109 75.2
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 2.1e-40 169.9 196 43.4
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 3.5e-40 169.1 147 56.5
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.3e-39 167.2 204 46.6
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.7e-39 166.8 204 46.1
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 3.9e-39 165.6 134 59.0
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 4.4e-35 152.1 183 45.4
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 1.4e-33 147.1 183 44.3
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 1.4e-33 147.1 183 44.3
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 1.1e-30 137.5 197 42.1
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 7.6e-27 124.8 93 60.2
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.9e-25 120.2 86 60.5
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.0e-18 97.8 70 68.6
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 1.2e-16 90.9 149 38.9
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 1.5e-14 84.0 157 31.2
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 3.3e-14 82.8 153 30.1
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 1.6e-13 80.5 166 27.1
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 2.8e-13 79.7 166 26.5
EL10Ac5g11991 Beta vulgaris HOM05D006348 ORTHO05D008261 4.8e-13 79.0 163 28.2
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 6.2e-13 78.6 166 26.5
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 1.1e-12 77.8 160 29.4
ATR0681G302 Amborella trichopoda HOM05D006348 ORTHO05D008261 4.1e-12 75.9 166 29.5
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 1.2e-11 74.3 151 29.1
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 2.6e-11 73.2 162 27.8
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 3.8e-10 69.3 156 28.2
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 8.4e-10 68.2 153 27.5
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 1.4e-09 67.4 57 63.2
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.5e-09 66.6 49 51.0
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 9.3e-09 64.7 39 71.8
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 2.3e-07 60.1 96 35.4


User provided reference genes

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